rna1046, rna1046 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1046
Unique Name	rna1046
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2685
Alignment location	CM002456.1:1038337..1039374 +

Link to JBrowse

Properties


Property Name	Value
Product	nadh-ubiquinone oxidoreductase b18 subunit family protein
Orig transcript id	gnl\|cribi\|Naga_100050g13.6868.mrna
Orig protein id	gnl\|cribi\|Naga_100050g13.6868
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1038337..1039374 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g13	gene1007	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1046	rna1046-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29645.1	cds1045	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1038337..1039374+
coding sequence from alignment at CM002456.1:1038337..1039374+

mRNA sequence

>rna1046 ID=rna1046|Name=rna1046|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp
TAGGTTTCCGCCACTCTCTTCCCCGTGGCCTCGGTTATGAAAACGCAGGG
AGTTTTCAAGCCCGTCGTTTCCCTAATGCCATTTTCCTGAAAGGCAATAC
CCTCTTCGTCAGAGAAATGAGGCAGAAAACTCGATATGGCACGTTTTTCT
CTCTGTCATTTAATGATGTTCTGCAAGTGGCACGTGCCCGACATGTTTCT
CATGCTTTTGGACCTTCCTTGTCCTCTCACGTTTCACAGGCATCCACCTG
AAATATCAGTCTTCCTTGCAGCTCACGCACTTTAGAGAACCTGCCCACGA
CGGGGTTTTCATCCTCTGAAGGCGTCTCTGTTCAACGACTTGAATTGAAG
CATCATGACTCACCCTGCTCGTAGCTCGATCTCCCTACTTTCCCTTGTTC
TTCTCCTATCAAATACGCGAGCTTTTTTCCACTGCCCGGTGGCGTTGCGA
CCTGCACTCACGCGTCTCTCATTCTTTGGAGGCTCGCGACAGCCCCACGG
ACAAGAGCGTGGCCCTCCCTCCGCCCCCGCTCTTCCCGGTACTACGCTTG
TACTAGAGCATCCATCCACCGGCTCCCAGGTCTACATCGTGGGGTGCGTC
CATGGCTCAGAGGCATCGGAGGAAGATGTCTCCACCGTTTTCCGCCTACA
TTCGCCTGCGGCAGTGGTGCTAGAGCTATGCCCGGCTCGTTTCGAGGGCA
TGCAGGCGGAGGAGGCGAAGTACCTGGCGGCGCTTCAAGCGGCGGAGCGT
CGCCATGTAGCCAAGACTGAGACGAGAGGCACGACGCCACAGTCGACCCA
TGGAGGGTCAGGTGGAGTCAAAGCATCACCGTCCTCCCATCCGGTCGATG
CCTGGGGGGAGGCCTCAAGAACGCTCGGCAGGCTGAGGGAGGGCCTGACG
GAGGTGGGCAGCACCCTTCAGACATTCTCCAAGCAGCACGGACTCATGCA
GACCCTTCTCATCGCCCTTCTCTCCTCCTCCGCCGAGGTGCAGCGCGTAC
TAAGCAGCTGCAGCAGCCGGGCGGCCGGACTCCCGCGGCGGCGCCGAGGG
TCGTGTGAGTTTCGCACCAGTGTCGAGCTCGCGCAGGCTGCAAAGGCCAC
TGTCGTTCTAGGAGACCAGGACCTTGTCGTAACTCTTGGGAGATTCAAGC
AAGGCATCTGGCCTGGAGGCGGTCCGCGGCTGGAAGAAGTGCGGGCGGGA
CAGGGCGGACGGGAGGAGAGGCCGAGTAACATGGGCCGACGCGCCATGAT
GGAGCTGACCTCGTTTCGCGATGCCCTTCTGGGCCCTGCAGACCTCCCGC
GGACGTGTCGCGTGGACGTCCTCCGCCTGCTGTTCACAGAGGAGCGCTAC
CTGCGGGAGGTGGCGACGGTGTTGGTCCCTGTGGGCCTGGTGGTGCTCGG
GGCTCTCAGGGCGATGGAGGCCGCCGGAGACACGGTCCTGGCCTCGGCCG
CCCAGATTCTCCCCTCCTCTCTCACATCCCTTGGCGAGCTTGCCCCCTCT
ATCCCTCTCTTCTCTGCCGGTGTCGGCGTGGGCGCAGGGGTGGGACTGGA
GGGCGTGCTGGGTGCCGACGTGCTCGCCAACATCGGGTGGGCAGCCCTCA
ACGCTTCCATGCTCTGCTACTTTGTGGCCATAAACCGGTACATCCTCGTG
GAGCGAGATGCGTTCCTGGCGGACTCCATCGCCAGGGCGGCGGCGACGAA
GGAGACGAAAGGGAGGGTGGTGGCGGCCGTGGTGGGCCTCTTGCATGGGA
ACGGGATCGCGCGGCACCTGAGGGAGAGACACGGATTCGTCTTGCGCGAT
CGCCCGTAGATTAAAAGGAGTAAGGCGCGGAGGGAGAGGGAGTGAAACGG
TTAAAAGGAGGCGCGTGTGTGGCGGGGCGGGACCACAGGCAGCACTGTGA
TTGCTGGGGTCATGTGAAGAATGTGGCATAGGAAGGGATTCAGGAGGAAG
CCAGCCCGGTAGGTTCAATGGGGCGGAGCACGGGGACATTAGAAAGATGC
ATTGGGTCGATTCAAGCCCGGTGATGCCAGGCTTGCCGGGACTACGGGGA
GGGATCGCCAGGAAAAATACCACAAAGCACTTTGTACATAGGGGGGCACG
CGGCCTGCAACACGGCAGAAGTAAGAAAAGGCCGCCCAAGAATGCAATCG
AAGGATAGGGAGGAAATCATGGGATAGATTTCGTAGATCTAGCGGATTCT
GAGGAGGGGGACGAGGAAGGCGAGCGTGAGCACGGACAGAAGTCTACGTT
TCCTTCCATTTTACCCGTCACTGTCTTGGCCTGCCGCAGGTGGCGGTGCA
ATTTTGCTCTCTGGACCATGTCCAGAATGAGAAAGTGCTTGGAGTGCGAA
GGCTTGCCAGGGAAAGTGGCTGCGAAGAAAGACATAGTGTTTATCGTGGA
GGGTGCGGTATGTGGGCGCTTTTGGACGGCAGGAGGTCTGCACCGCAAAC
TATCGTGCAAGGATCGCCTGGGTGTCTCAGTTGTGAAAATGATGTATCTA
TAGACAATATGATGTCGTGGACTAGACGCGCCGTTGTATCTTAGAAACGG
GTGGGCAGAAACTGGCAATAAAAAGGAATCAAGCGAACGCCTGGTCTGCT
TGCCAGCTGCACGCATGTCTGAACCGGCGTCACGTTTGGTCTTAAAGCTT
ACTTGTACGGAGACTATTGTTACCACTCTTTCCGC

protein sequence of rna1046

>rna1046-protein ID=rna1046-protein|Name=rna1046|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDE
RHGYEACQYAEYRKRAQLLAEKR

mRNA from alignment at CM002456.1:1038337..1039374+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1046 ID=rna1046|Name=rna1046|organism=Nannochloropsis gaditana|type=mRNA|length=1038bp|location=Sequence derived from alignment at CM002456.1:1038337..1039374+ (Nannochloropsis gaditana)
ACGAGAATATGTGCCAAGCCAGAGTCTCAGACGCCTGGCGACTTTGAGCG
AAGTTCTTCGCATTTATTCACACTTTTAATGATAAGAAGACCGATTGCAC
CGACACCGACAGGGATTACATCGTCTGAGCCCCAGCTGTTGAGAGGACGA
TGACAGTCTCAGGTGCGTCCGGATGCTTGTCTCAAAGTTTCTGTTCCTCA
TACGTATCGGAAGAAGTGGGTGTCACACATTCTATCTCGAGATGGGAAAG
CGCTTCTCCAGCAGACTGTAGGCTTCTTGCTCGTATCTCGCATGTGTCCT
TGCCGGACCAATGCATGATGCTGTCAAATGCCAGCAGCCGTGCGTCGATG
TCCGTTTGTAAGACGTTTCAAGGTGTAAACGTGTGAGCGCCGGTCTGTAT
CCTTCACCTACAATTCCGTCGTCCCTGTCTTTGGATCCATGCAGAGTTGA
AAACCAccaaagaggagatggacaaGGCACAGATTGACCTGGCGTTGAGA
GATGCCTGTGCCCACCTTCTCATCCCTCTGAACAAGTAAGTTTCTGTCGA
TGTAGATAGGATCTGGCCTGTGTTTTCTCCGTTCAGTTGAGGCCTGACAC
ATCTCTTTGTCCCAGGTGTCGTCGCATGACATTCTTCTTGCCATGGAAAT
GCGAAGATGAACGGCACGGTTATGAGGCCTGCCAGTACGCCGAGTGAGTA
ATTTGAACGCGAACGAGGGGAATAAGTGGGTTGAGGGAGATAATTGGAAC
ATTGGAAGGTGATGATCGGGTAGAGGAATGAAGATCGAGGGGAGCCCCGC
GTCTCATGTTTCCCATCCACCCTTGCGACCTTTTTGAGCAGGTACCGAAA
GCGTGCCCAACTGTTGGCAGAGAAAAGGTAAGGCATGCACGGAGCTTGCT
TGTTACCTTGCGCGTCATGAGATGGAAAGCCAGTCGTGGGTTGTGAAGCT
CCCAGAAGAGAACGGACCTGCTTCTTGTGGGTGAAACATTGTTGTaaggg
gagtgggagagacCAAGCAACGTATCTGCAGACAAAGT

Coding sequence (CDS) from alignment at CM002456.1:1038337..1039374+

>rna1046 ID=rna1046|Name=rna1046|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002456.1:1038337..1039374+ (Nannochloropsis gaditana)
ATGACAGTCTCAGAGTTGAAAACCAccaaagaggagatggacaaGGCACA
GATTGACCTGGCGTTGAGAGATGCCTGTGCCCACCTTCTCATCCCTCTGA
ACAAGTGTCGTCGCATGACATTCTTCTTGCCATGGAAATGCGAAGATGAA
CGGCACGGTTATGAGGCCTGCCAGTACGCCGAGTACCGAAAGCGTGCCCA
ACTGTTGGCAGAGAAAAGGTAAATGACAGTCTCAGAGTTGAAAACCAcca
aagaggagatggacaaGGCACAGATTGACCTGGCGTTGAGAGATGCCTGT
GCCCACCTTCTCATCCCTCTGAACAAGTGTCGTCGCATGACATTCTTCTT
GCCATGGAAATGCGAAGATGAACGGCACGGTTATGAGGCCTGCCAGTACG
CCGAGTACCGAAAGCGTGCCCAACTGTTGGCAGAGAAAAGGTAAATGACA
GTCTCAGAGTTGAAAACCAccaaagaggagatggacaaGGCACAGATTGA
CCTGGCGTTGAGAGATGCCTGTGCCCACCTTCTCATCCCTCTGAACAAGT
GTCGTCGCATGACATTCTTCTTGCCATGGAAATGCGAAGATGAACGGCAC
GGTTATGAGGCCTGCCAGTACGCCGAGTACCGAAAGCGTGCCCAACTGTT
GGCAGAGAAAAGGTAAATGACAGTCTCAGAGTTGAAAACCAccaaagagg
agatggacaaGGCACAGATTGACCTGGCGTTGAGAGATGCCTGTGCCCAC
CTTCTCATCCCTCTGAACAAGTGTCGTCGCATGACATTCTTCTTGCCATG
GAAATGCGAAGATGAACGGCACGGTTATGAGGCCTGCCAGTACGCCGAGT
ACCGAAAGCGTGCCCAACTGTTGGCAGAGAAAAGGTAA

Synonyms

Publications