EWM29645.1, cds1045 (CDS) Nannochloropsis gaditana

Overview
NameEWM29645.1
Unique Namecds1045
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1038486..1038498 +
Alignment locationCM002456.1:1038781..1038871 +
Alignment locationCM002456.1:1038952..1039029 +
Alignment locationCM002456.1:1039178..1039217 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29645.1
Productnadh-ubiquinone oxidoreductase b18 subunit family protein
Orig transcript idgnl|cribi|Naga_100050g13.6868.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1038486..1038498 +
CM002456.1supercontigCM002456.1:1038781..1038871 +
CM002456.1supercontigCM002456.1:1038952..1039029 +
CM002456.1supercontigCM002456.1:1039178..1039217 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003954NADH dehydrogenase activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR008698NADH_UbQ_OxRdtase_B18_su
Homology
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|585112217|gb|EWM29645.1| (nadh-ubiquinone oxidoreductase b18 subunit family protein [Nannochloropsis gaditana])

HSP 1 Score: 152.14 bits (383), Expect = 7.298e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR
Sbjct:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|693501855|emb|CEF96859.1| (NADH:ubiquinone oxidoreductase, B18 subunit [Ostreococcus tauri])

HSP 1 Score: 97.4413 bits (241), Expect = 3.590e-25
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    2 TVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLL 69
            T SE+  T+EEM +A++D+  RD CAHLLIPLN+CRR +FFLPWKCE ERH YE CQY EY KR   +
Sbjct:    3 TASEMIATREEMREAKLDIGYRDFCAHLLIPLNECRRKSFFLPWKCEHERHVYEKCQYKEYMKRVAAM 70          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|612386815|ref|XP_007508929.1| (predicted protein [Bathycoccus prasinos] >gi|412992302|emb|CCO20015.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 96.6709 bits (239), Expect = 8.052e-25
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    4 SELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAE 61
            S +K TKEEM KA IDLA RD CAHLLIPLN+CRR +FFLPWKC+DERH YE CQY E
Sbjct:    9 STMKATKEEMKKAGIDLAYRDFCAHLLIPLNECRRKSFFLPWKCKDERHVYEKCQYEE 66          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|576041466|ref|XP_006694606.1| (hypothetical protein CTHT_0042030 [Chaetomium thermophilum var. thermophilum DSM 1495] >gi|340939099|gb|EGS19721.1| hypothetical protein CTHT_0042030 [Chaetomium thermophilum var. thermophilum DSM 1495])

HSP 1 Score: 96.6709 bits (239), Expect = 1.157e-24
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0
Query:    7 KTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            + T+EEM  A++ LA RD+CAHLLIPLN+CR  T++LPWKCEDERH YE CQY E++KR Q + E R
Sbjct:   11 RATREEMRDAKVPLAYRDSCAHLLIPLNRCRYETYYLPWKCEDERHSYEKCQYLEFKKRVQKMEELR 77          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|1111892283|gb|OJJ60557.1| (hypothetical protein ASPSYDRAFT_56103 [Aspergillus sydowii CBS 593.65])

HSP 1 Score: 95.9005 bits (237), Expect = 2.420e-24
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            + +++ + T+EEM  A++ L  RD+CAHLLIPLN+CR+  ++LPWKCEDERHGYE CQY E++KR   + E R
Sbjct:   11 VGLTDTQATREEMSAARLPLQYRDSCAHLLIPLNRCRQQEYYLPWKCEDERHGYEKCQYEEFKKRVAKMDELR 83          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|1111713216|gb|OJI99883.1| (hypothetical protein ASPVEDRAFT_81473 [Aspergillus versicolor CBS 583.65])

HSP 1 Score: 95.5153 bits (236), Expect = 2.821e-24
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            + +++ + T+EEM  A++ L  RD+CAHLLIPLN+CR+  ++LPWKCEDERHGYE CQY E++KR   + E R
Sbjct:   11 VGLADTQATREEMSAARLPLQYRDSCAHLLIPLNRCRQQEYYLPWKCEDERHGYEKCQYEEFKKRVAKMDELR 83          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|399167136|emb|CCE32110.1| (uncharacterized protein CPUR_05968 [Claviceps purpurea 20.1])

HSP 1 Score: 95.1301 bits (235), Expect = 4.507e-24
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 0
Query:    8 TTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
             T+EEM +A++ LA RD+CAHLLIPLNKCR+ +++LPWKCEDERH YE CQY E++KR   + E R
Sbjct:   12 ATREEMREARLPLAYRDSCAHLLIPLNKCRKSSWYLPWKCEDERHSYEKCQYVEFKKRVAKMDELR 77          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|367039267|ref|XP_003650014.1| (hypothetical protein THITE_2169523 [Thielavia terrestris NRRL 8126] >gi|346997275|gb|AEO63678.1| hypothetical protein THITE_2169523 [Thielavia terrestris NRRL 8126])

HSP 1 Score: 94.7449 bits (234), Expect = 6.688e-24
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0
Query:    7 KTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            + T+EEM  A++ LA RD+CAHLLIPLN+CR  T++LPWKCEDERH YE CQY E++KR   + E R
Sbjct:   11 RATREEMRDAKVPLAYRDSCAHLLIPLNRCRFETYYLPWKCEDERHSYEKCQYVEFKKRVAKMNELR 77          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|902274296|emb|CRL22387.1| (NADH:ubiquinone oxidoreductase, B18 subunit [Penicillium camemberti] >gi|1168058614|gb|OQD61245.1| hypothetical protein PENPOL_c018G08718 [Penicillium polonicum])

HSP 1 Score: 94.7449 bits (234), Expect = 7.482e-24
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            + +SE   T++EM +A++ +  RD+CAHLLIPLN+CR+  ++LPWKCEDERH YE CQY E++KR   + E R
Sbjct:   11 VGLSETSATRQEMSEARVPMQYRDSCAHLLIPLNRCRQAEYYLPWKCEDERHSYEKCQYEEFKKRVAKMDELR 83          
BLAST of EWM29645.1 vs. NCBI_GenBank
Match: gi|1021536932|gb|KZN84334.1| (NADH dehydrogenase 1 beta subcomplex subunit [Penicillium chrysogenum])

HSP 1 Score: 94.3597 bits (233), Expect = 1.014e-23
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    2 TVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEKR 73
            +V+++  T++EM +A++ +  RD+CAHLLIPLN+CR+  ++LPWKCEDERH YE CQY E++KR   + E R
Sbjct:   17 SVNQIPATRQEMSEARLPMQYRDSCAHLLIPLNRCRQAEYYLPWKCEDERHSYEKCQYEEFKKRVAKMDELR 88          
The following BLAST results are available for this feature:
BLAST of EWM29645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112217|gb|EWM29645.1|7.298e-47100.00nadh-ubiquinone oxidoreductase b18 subunit family ... [more]
gi|693501855|emb|CEF96859.1|3.590e-2563.24NADH:ubiquinone oxidoreductase, B18 subunit [Ostre... [more]
gi|612386815|ref|XP_007508929.1|8.052e-2575.86predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|576041466|ref|XP_006694606.1|1.157e-2462.69hypothetical protein CTHT_0042030 [Chaetomium ther... [more]
gi|1111892283|gb|OJJ60557.1|2.420e-2454.79hypothetical protein ASPSYDRAFT_56103 [Aspergillus... [more]
gi|1111713216|gb|OJI99883.1|2.821e-2454.79hypothetical protein ASPVEDRAFT_81473 [Aspergillus... [more]
gi|399167136|emb|CCE32110.1|4.507e-2462.12uncharacterized protein CPUR_05968 [Claviceps purp... [more]
gi|367039267|ref|XP_003650014.1|6.688e-2461.19hypothetical protein THITE_2169523 [Thielavia terr... [more]
gi|902274296|emb|CRL22387.1|7.482e-2453.42NADH:ubiquinone oxidoreductase, B18 subunit [Penic... [more]
gi|1021536932|gb|KZN84334.1|1.014e-2352.78NADH dehydrogenase 1 beta subcomplex subunit [Peni... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1046rna1046Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications