rna1045, rna1045 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1045
Unique Name	rna1045
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2108
Alignment location	CM002456.1:1035450..1038134 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100050g14.6870.mrna
Orig protein id	gnl\|cribi\|Naga_100050g14.6870
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1035450..1038134 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g14	gene1006	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29647.1	cds1044	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1045	rna1045-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1035450..1038134-
coding sequence from alignment at CM002456.1:1035450..1038134-

mRNA sequence

>rna1045 ID=rna1045|Name=rna1045|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp
ACAGCATCAGCCATCATGAGATATTTTTCAAGCGTGTTGTTATTACTCTC
GGGTTCAAGCCTCAGCTTCTCCTTTCTACCGCCGCTTCCCTCATCCCGCT
TGGACTCCGCCCATCCTGCTTCAAGACATCGCCCCTGTAGCCCCGGCCTC
TCTGCTCCACTTTCAGCCAAAACCTCACGCACCGACCAGAATGGCATGTC
GTATGTGAGGAGACCGCACATATATAGGCCAGGGAAGTCTCCCGAATTGA
GCACCAGCTCCAGCAACAAGGCTGCCCTCGCAGCCGAGACTCGGGAGGGC
CCGGACGGTATGCTGGAGGAGGGAGGGGAGCAGGCCTTGCTCGCGAGGCT
GTTGGAAACAATGGGCCGGGAGTCGCTCTCTGAGCAAACGCTGGACTCCG
TCTTGCGCGTATATTGCACCCACGTGCAGCCCTCCTTTGCCGCCCCCTGG
CAGCGGCTCCAGCAAATCTCTTCCACCTCCTCCGGCTTCGTCATAGAAGG
TCGCCGCATCATCACCAACGCCCACAGTGTGGAGTACGGCTCAATCATCC
AAATACGCAAACGCGGGTGCGATATCAAGTGGGTGGCAGAACTGCTTGCC
TACGGTCCTGAGTGCGACCTGGCCGTGCTGACCGTCAGGGATGAGGCCTT
CTGGGAGGACCTGTACCCACTGGCCTTCGGAGAGCTCCCAGCCCTGCTCG
ACGACGTGAGCGTGGTGGGCTACCCGGTGGGCGGTGAATCTCTGTCCGTA
ACCGCGGGCGTGGTCTCCCGCATCGAGCTTCAAGAGTACGCCCAGGGGGG
AGAGACGCTCTTGGCCATCCAGATCGACGCCGCCATCAACAGCGGGAACA
GCGGAGGCCCTGTGATCAACGACCAGGACAAGCTCGTGGGGGTGGCCTTC
CAGTCCCTGTCCTCTCACGACACGGAAAACATCGGCTACGTCATCCCCGT
CGACATCCTCCTCCATTTCCTCGCGGACATCGAGCGACACGGGAAATACA
CGGGCTTCTGCCGCCTGGGGGTCAAGTTCCAGCCGATGGAGTCGCCCGCC
CTCCGCCGTCACAAGGCTCTCTCACCCGGCGCTTCTGGCGTCCTCATTAC
CAGAGTCGACCCGCTCGCGCCCGCGCACGGCCTCCTGCGCAAGGGCGACG
TCCTCATGGGCGTGGACGGCATCTCCCTCGCCAACGACGGGACCATCCCT
TTCAGAAAGGGGGAGCGCGTGGAGCTCCACTACTACTTCTCCCAGTTGTT
TCAAGGGGACACGGTCCAACTCCGGATTTGGCGCGAAGGGATCACGCAGG
ACATCGCGGTCCCCGCCTACATTTACAAACTCGCCGTTCGCCCGCATTTG
AACAACGAGATGCCGTCCTACTTCATGGTGGGGGGCATGGTCTTCACGGT
CCTCTCGCACCCCTTCCTCCTCTCCAACCTGGGCGAGACGTACGCGCCCG
AAACGGACGCAGACGTCCGCCTTCTCTCCCTCATTCAGTCCCCTCTTCAG
GAACCCGAACAGCAGCTTGTGGTTCTGTCGGAGGTTCTAGAGCACTCTGT
GAACCTGGGCTACGAGCTTTTTCATCGCCAGCATCTGACGCTTTTCAACG
GCGAAGAAATCAGAAATTTGGCCCATCTGGTCTCCCTTGTCGATGCCTGC
CGGGAAGGAGAGATGGTTTTCGAATTTGACCGGGGCGAGATCCTTGTCCT
GGACGCTGGCGCTGCTCACAAGGCCACTCAAGAGGTGGCATCCACACACG
GTATTCCGGCATCGCGGTCTACGAACTTAGTGGCACCGGAGGGAGGAACG
CTCGCACCACCTACCTCAACGGTGGCAGCCGAGGACGCAAAGATGAAAGT
CAAAAAATCCATCGCCCCTCCGATAGAGGCGGCCAGGACCTCAACAGCAT
CCCAGTGAGCCCTGTATTTCGAAGATAGTGTTAGAGAGTGTGCGGTCCCG
CCGGGTAGTGATGTCAGTCGGCGGTAAATTTTGCATCAATAATGGCAACA
GTTGGTAATGGTGTGACAAGCCAAAGTACCCATGGCGAGGGCGGAAAGAG
TGGTAACAATAGTCTCCGTACAAGTAAGCTTTAAGACCAAACGTGACGCC
GGTTCAGA

protein sequence of rna1045

>rna1045-protein ID=rna1045-protein|Name=rna1045|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MTHPARSSISLLSLVLLLSNTRAFFHCPVALRPALTRLSFFGGSRQPHGQ
ERGPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHS
PAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKTETRGTTPQSTHG
GSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQT
LLIALLSSSAEVQRVLSSCSSRAAGLPRRRRGSCEFRTSVELAQAAKATV
VLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMME
LTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGA
LRAMEAAGDTVLASAAQILPSSLTSLGELAPSIPLFSAGVGVGAGVGLEG
VLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKE
TKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP

mRNA from alignment at CM002456.1:1035450..1038134-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1045 ID=rna1045|Name=rna1045|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp|location=Sequence derived from alignment at CM002456.1:1035450..1038134- (Nannochloropsis gaditana)
TAGGTTTCCGCCACTCTCTTCCCCGTGGCCTCGGTTATGAAAACGCAGGG
AGTTTTCAAGCCCGTCGTTTCCCTAATGCCATTTTCCTGAAAGGCAATAC
CCTCTTCGTCAGAGAAATGAGGCAGAAAACTCGATATGGCACGTTTTTCT
CTCTGTCATTTAATGATGTTCTGCAAGTGGCACGTGCCCGACATGTTTCT
CATGCTTTTGGACCTTCCTTGTCCTCTCACGTTTCACAGGCATCCACCTG
AAATATCAGTCTTCCTTGCAGCTCACGCACTTTAGAGAACCTGCCCACGA
CGGGGTTTTCATCCTCTGAAGGCGTCTCTGTTCAACGACTTGAATTGAAG
CATCATGACTCACCCTGCTCGTAGCTCGATCTCCCTACTTTCCCTTGTTC
TTCTCCTATCAAATACGCGAGCTTTTTTCCACTGCCCGGTGGCGTTGCGA
CCTGCACTCACGCGTCTCTCATTCTTTGGAGGCTCGCGACAGCCCCACGG
ACAAGAGCGTGGCCCTCCCTCCGCCCCCGCTCTTCCCGGTACTACGCTTG
TACTAGAGCATCCATCCACCGGCTCCCAGGTCTACATCGTGGGGTGCGTC
CATGGCTCAGAGGCATCGGAGGAAGATGTCTCCACCGTTTTCCGCCTACA
TTCGCCTGCGGCAGTGGTGCTAGAGCTATGCCCGGCTCGTTTCGAGGGCA
TGCAGGCGGAGGAGGCGAAGTACCTGGCGGCGCTTCAAGCGGCGGAGCGT
CGCCATGTAGCCAAGACTGAGACGAGAGGCACGACGCCACAGTCGACCCA
TGGAGGGTCAGGTGGAGTCAAAGCATCACCGTCCTCCCATCCGGTCGATG
CCTGGGGGGAGGCCTCAAGAACGCTCGGCAGGCTGAGGGAGGGCCTGACG
GAGGTGGGCAGCACCCTTCAGACATTCTCCAAGCAGCACGGACTCATGCA
GACCCTTCTCATCGCCCTTCTCTCCTCCTCCGCCGAGGTGCAGCGCGTAC
TAAGCAGCTGCAGCAGCCGGGCGGCCGGACTCCCGCGGCGGCGCCGAGGG
TCGTGTGAGTTTCGCACCAGTGTCGAGCTCGCGCAGGCTGCAAAGGCCAC
TGTCGTTCTAGGAGACCAGGACCTTGTCGTAACTCTTGGGAGATTCAAGC
AAGGCATCTGGCCTGGAGGCGGTCCGCGGCTGGAAGAAGTGCGGGCGGGA
CAGGGCGGACGGGAGGAGAGGCCGAGTAACATGGGCCGACGCGCCATGAT
GGAGCTGACCTCGTTTCGCGATGCCCTTCTGGGCCCTGCAGACCTCCCGC
GGACGTGTCGCGTGGACGTCCTCCGCCTGCTGTTCACAGAGGAGCGCTAC
CTGCGGGAGGTGGCGACGGTGTTGGTCCCTGTGGGCCTGGTGGTGCTCGG
GGCTCTCAGGGCGATGGAGGCCGCCGGAGACACGGTCCTGGCCTCGGCCG
CCCAGATTCTCCCCTCCTCTCTCACATCCCTTGGCGAGCTTGCCCCCTCT
ATCCCTCTCTTCTCTGCCGGTGTCGGCGTGGGCGCAGGGGTGGGACTGGA
GGGCGTGCTGGGTGCCGACGTGCTCGCCAACATCGGGTGGGCAGCCCTCA
ACGCTTCCATGCTCTGCTACTTTGTGGCCATAAACCGGTACATCCTCGTG
GAGCGAGATGCGTTCCTGGCGGACTCCATCGCCAGGGCGGCGGCGACGAA
GGAGACGAAAGGGAGGGTGGTGGCGGCCGTGGTGGGCCTCTTGCATGGGA
ACGGGATCGCGCGGCACCTGAGGGAGAGACACGGATTCGTCTTGCGCGAT
CGCCCGTAGATTAAAAGGAGTAAGGCGCGGAGGGAGAGGGAGTGAAACGG
TTAAAAGGAGGCGCGTGTGTGGCGGGGCGGGACCACAGGCAGCACTGTGA
TTGCTGGGGTCATGTGAAGAATGTGGCATAGGAAGGGATTCAGGAGGAAG
CCAGCCCGGTAGGTTCAATGGGGCGGAGCACGGGGACATTAGAAAGATGC
ATTGGGTCGATTCAAGCCCGGTGATGCCAGGCTTGCCGGGACTACGGGGA
GGGATCGCCAGGAAAAATACCACAAAGCACTTTGTACATAGGGGGGCACG
CGGCCTGCAACACGGCAGAAGTAAGAAAAGGCCGCCCAAGAATGCAATCG
AAGGATAGGGAGGAAATCATGGGATAGATTTCGTAGATCTAGCGGATTCT
GAGGAGGGGGACGAGGAAGGCGAGCGTGAGCACGGACAGAAGTCTACGTT
TCCTTCCATTTTACCCGTCACTGTCTTGGCCTGCCGCAGGTGGCGGTGCA
ATTTTGCTCTCTGGACCATGTCCAGAATGAGAAAGTGCTTGGAGTGCGAA
GGCTTGCCAGGGAAAGTGGCTGCGAAGAAAGACATAGTGTTTATCGTGGA
GGGTGCGGTATGTGGGCGCTTTTGGACGGCAGGAGGTCTGCACCGCAAAC
TATCGTGCAAGGATCGCCTGGGTGTCTCAGTTGTGAAAATGATGTATCTA
TAGACAATATGATGTCGTGGACTAGACGCGCCGTTGTATCTTAGAAACGG
GTGGGCAGAAACTGGCAATAAAAAGGAATCAAGCGAACGCCTGGTCTGCT
TGCCAGCTGCACGCATGTCTGAACCGGCGTCACGTTTGGTCTTAAAGCTT
ACTTGTACGGAGACTATTGTTACCACTCTTTCCGC

Coding sequence (CDS) from alignment at CM002456.1:1035450..1038134-

>rna1045 ID=rna1045|Name=rna1045|organism=Nannochloropsis gaditana|type=CDS|length=1455bp|location=Sequence derived from alignment at CM002456.1:1035450..1038134- (Nannochloropsis gaditana)
ATGACTCACCCTGCTCGTAGCTCGATCTCCCTACTTTCCCTTGTTCTTCT
CCTATCAAATACGCGAGCTTTTTTCCACTGCCCGGTGGCGTTGCGACCTG
CACTCACGCGTCTCTCATTCTTTGGAGGCTCGCGACAGCCCCACGGACAA
GAGCGTGGCCCTCCCTCCGCCCCCGCTCTTCCCGGTACTACGCTTGTACT
AGAGCATCCATCCACCGGCTCCCAGGTCTACATCGTGGGGTGCGTCCATG
GCTCAGAGGCATCGGAGGAAGATGTCTCCACCGTTTTCCGCCTACATTCG
CCTGCGGCAGTGGTGCTAGAGCTATGCCCGGCTCGTTTCGAGGGCATGCA
GGCGGAGGAGGCGAAGTACCTGGCGGCGCTTCAAGCGGCGGAGCGTCGCC
ATGTAGCCAAGACTGAGACGAGAGGCACGACGCCACAGTCGACCCATGGA
GGGTCAGGTGGAGTCAAAGCATCACCGTCCTCCCATCCGGTCGATGCCTG
GGGGGAGGCCTCAAGAACGCTCGGCAGGCTGAGGGAGGGCCTGACGGAGG
TGGGCAGCACCCTTCAGACATTCTCCAAGCAGCACGGACTCATGCAGACC
CTTCTCATCGCCCTTCTCTCCTCCTCCGCCGAGGTGCAGCGCGTACTAAG
CAGCTGCAGCAGCCGGGCGGCCGGACTCCCGCGGCGGCGCCGAGGGTCGT
GTGAGTTTCGCACCAGTGTCGAGCTCGCGCAGGCTGCAAAGGCCACTGTC
GTTCTAGGAGACCAGGACCTTGTCGTAACTCTTGGGAGATTCAAGCAAGG
CATCTGGCCTGGAGGCGGTCCGCGGCTGGAAGAAGTGCGGGCGGGACAGG
GCGGACGGGAGGAGAGGCCGAGTAACATGGGCCGACGCGCCATGATGGAG
CTGACCTCGTTTCGCGATGCCCTTCTGGGCCCTGCAGACCTCCCGCGGAC
GTGTCGCGTGGACGTCCTCCGCCTGCTGTTCACAGAGGAGCGCTACCTGC
GGGAGGTGGCGACGGTGTTGGTCCCTGTGGGCCTGGTGGTGCTCGGGGCT
CTCAGGGCGATGGAGGCCGCCGGAGACACGGTCCTGGCCTCGGCCGCCCA
GATTCTCCCCTCCTCTCTCACATCCCTTGGCGAGCTTGCCCCCTCTATCC
CTCTCTTCTCTGCCGGTGTCGGCGTGGGCGCAGGGGTGGGACTGGAGGGC
GTGCTGGGTGCCGACGTGCTCGCCAACATCGGGTGGGCAGCCCTCAACGC
TTCCATGCTCTGCTACTTTGTGGCCATAAACCGGTACATCCTCGTGGAGC
GAGATGCGTTCCTGGCGGACTCCATCGCCAGGGCGGCGGCGACGAAGGAG
ACGAAAGGGAGGGTGGTGGCGGCCGTGGTGGGCCTCTTGCATGGGAACGG
GATCGCGCGGCACCTGAGGGAGAGACACGGATTCGTCTTGCGCGATCGCC
CGTAG

Synonyms

Publications