EWM29647.1, cds1044 (CDS) Nannochloropsis gaditana

Overview
NameEWM29647.1
Unique Namecds1044
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1036326..1037780 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29647.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100050g14.6870.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1036326..1037780 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|585112219|gb|EWM29647.1| (hypothetical protein Naga_100050g14 [Nannochloropsis gaditana])

HSP 1 Score: 962.214 bits (2486), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 0
Query:    1 MTHPARSSISLLSLVLLLSNTRAFFHCPVALRPALTRLSFFGGSRQPHGQERGPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKTETRGTTPQSTHGGSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQTLLIALLSSSAEVQRVLSSCSSRAAGLPRRRRGSCEFRTSVELAQAAKATVVLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMMELTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGALRAMEAAGDTVLASAAQILPSSLTSLGELAPSIPLFSAGVGVGAGVGLEGVLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKETKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP 484
            MTHPARSSISLLSLVLLLSNTRAFFHCPVALRPALTRLSFFGGSRQPHGQERGPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKTETRGTTPQSTHGGSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQTLLIALLSSSAEVQRVLSSCSSRAAGLPRRRRGSCEFRTSVELAQAAKATVVLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMMELTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGALRAMEAAGDTVLASAAQILPSSLTSLGELAPSIPLFSAGVGVGAGVGLEGVLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKETKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP
Sbjct:    1 MTHPARSSISLLSLVLLLSNTRAFFHCPVALRPALTRLSFFGGSRQPHGQERGPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKTETRGTTPQSTHGGSGGVKASPSSHPVDAWGEASRTLGRLREGLTEVGSTLQTFSKQHGLMQTLLIALLSSSAEVQRVLSSCSSRAAGLPRRRRGSCEFRTSVELAQAAKATVVLGDQDLVVTLGRFKQGIWPGGGPRLEEVRAGQGGREERPSNMGRRAMMELTSFRDALLGPADLPRTCRVDVLRLLFTEERYLREVATVLVPVGLVVLGALRAMEAAGDTVLASAAQILPSSLTSLGELAPSIPLFSAGVGVGAGVGLEGVLGADVLANIGWAALNASMLCYFVAINRYILVERDAFLADSIARAAATKETKGRVVAAVVGLLHGNGIARHLRERHGFVLRDRP 484          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|298705470|emb|CBJ28745.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 3.067e-9
Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 0
Query:   27 CPVALRPALTRLSFFG--GSRQPHGQERGPP--SAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAE---EAKYLAALQAAER 132
            C +  RP     SF    G+   +G    PP  S   +P T+LVL   +TG  +Y+VGC+HGS AS  DV  V     P AVVLELC +R + ++ +    AK  A L+  ER
Sbjct:   65 CSLRARPGWCTRSFSSRLGASAGNGNASSPPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRAKGDAPLEGKER 177          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|242015641|ref|XP_002428459.1| (conserved hypothetical protein [Pediculus humanus corporis] >gi|212513076|gb|EEB15721.1| conserved hypothetical protein [Pediculus humanus corporis])

HSP 1 Score: 68.5514 bits (166), Expect = 5.329e-9
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   60 LPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKT 138
            LP TT+VLE    GS+VY+VG  H SE S+EDV+ V R   P +VVLELC +R   +Q +E K L   +  E + V +T
Sbjct:   96 LPDTTIVLE-TDWGSKVYLVGTAHFSEQSQEDVAKVIRAVQPNSVVLELCESRSYMLQWKEEKILKIAEKMEFKMVKET 173          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|1174752013|gb|OQV20064.1| (Acid phosphatase type 7 [Hypsibius dujardini])

HSP 1 Score: 67.781 bits (164), Expect = 2.533e-8
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0
Query:   51 ERGPPSAPALPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPAR 112
            E+  P  P LP T  VL+HP++G +VYIVG  H    S+EDV+T  R   P  VVLELCP R
Sbjct:   61 EKFRPLNPELPETVTVLDHPTSGGRVYIVGTAHFGSKSQEDVATTIRQLMPDYVVLELCPER 122          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|546683378|gb|ERL93200.1| (hypothetical protein D910_10497 [Dendroctonus ponderosae])

HSP 1 Score: 63.1586 bits (152), Expect = 3.746e-7
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 0
Query:   60 LPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKT 138
            LP T  +L HP TG+ VY+VG  H S+ S+EDV  V R   P  +++ELCP+R   +  +E   L   +  +   +  T
Sbjct:   51 LPDTVTLLTHPETGANVYLVGTAHFSKESQEDVKKVIRHVQPQVIIVELCPSRTSMLALDEKTVLEEAKTIDMARIIST 129          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|1130228531|ref|XP_019759677.1| (PREDICTED: traB domain-containing protein [Dendroctonus ponderosae] >gi|478257083|gb|ENN77246.1| hypothetical protein YQE_06076, partial [Dendroctonus ponderosae])

HSP 1 Score: 63.1586 bits (152), Expect = 4.060e-7
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 0
Query:   60 LPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKT 138
            LP T  +L HP TG+ VY+VG  H S+ S+EDV  V R   P  +++ELCP+R   +  +E   L   +  +   +  T
Sbjct:   51 LPDTVTLLTHPETGANVYLVGTAHFSKESQEDVKKVIRHVQPQVIIVELCPSRTSMLALDEKTVLEEAKTIDMARIIST 129          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|1133430500|ref|XP_019871227.1| (PREDICTED: LOW QUALITY PROTEIN: traB domain-containing protein-like [Aethina tumida] >gi|1133446532|ref|XP_019879854.1| PREDICTED: traB domain-containing protein-like [Aethina tumida])

HSP 1 Score: 63.1586 bits (152), Expect = 4.192e-7
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0
Query:   60 LPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKT 138
            LP T  +L HP++G++VY+VG  H S+ S+EDVS V +   P  V+LELC +R   +  +EA  L   +  +   + +T
Sbjct:   54 LPPTVTLLTHPTSGAKVYLVGTAHFSKESQEDVSLVIQTVKPNVVILELCKSRTNILSLDEATVLEEAKNIDSAKILRT 132          
BLAST of EWM29647.1 vs. NCBI_GenBank
Match: gi|1069822164|ref|XP_018333937.1| (PREDICTED: traB domain-containing protein [Agrilus planipennis])

HSP 1 Score: 62.003 bits (149), Expect = 8.194e-7
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0
Query:   60 LPGTTLVLEHPSTGSQVYIVGCVHGSEASEEDVSTVFRLHSPAAVVLELCPARFEGMQAEEAKYLAALQAAERRHVAKT 138
            LP T  +L+HPSTG +VY+VG  H S+ S+EDV  V R   P  V+LELC AR   +  +E   L   +  + + +  T
Sbjct:   58 LPETVTLLKHPSTGVKVYLVGTAHFSKESQEDVIKVIRNVQPHIVMLELCKARTSILSFDEETILEESKNIDMQRILST 136          
The following BLAST results are available for this feature:
BLAST of EWM29647.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585112219|gb|EWM29647.1|0.000e+0100.00hypothetical protein Naga_100050g14 [Nannochlorops... [more]
gi|298705470|emb|CBJ28745.1|3.067e-938.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|242015641|ref|XP_002428459.1|5.329e-946.84conserved hypothetical protein [Pediculus humanus ... [more]
gi|1174752013|gb|OQV20064.1|2.533e-851.61Acid phosphatase type 7 [Hypsibius dujardini][more]
gi|546683378|gb|ERL93200.1|3.746e-736.71hypothetical protein D910_10497 [Dendroctonus pond... [more]
gi|1130228531|ref|XP_019759677.1|4.060e-736.71PREDICTED: traB domain-containing protein [Dendroc... [more]
gi|1133430500|ref|XP_019871227.1|4.192e-737.97PREDICTED: LOW QUALITY PROTEIN: traB domain-contai... [more]
gi|1069822164|ref|XP_018333937.1|8.194e-740.51PREDICTED: traB domain-containing protein [Agrilus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1045rna1045Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications