rna10402, rna10402 (mRNA) Nannochloropsis gaditana

Overview
Namerna10402
Unique Namerna10402
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationKK037279.1:16165..16586 -

Link to JBrowse

Properties
Property NameValue
Productd-isomer specific 2-hydroxyacid dehydrogenase
Orig transcript idgnl|cribi|Naga_101636g1.7687.mrna
Orig protein idgnl|cribi|Naga_101636g1.7687
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:16165..16586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101636g1gene10106Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10402rna10402-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20305.1cds10369Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10402 ID=rna10402|Name=rna10402|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGTTGAAGAGCACTTTTTTGCACGTACGTCAGCTTATACGTTCCTCAAA
ATGTTTACTGTACATATGTTTGAAGGTGTGCCGTAGATTTGTATGTTCAC
AACACATTAAAGGCAAAAGAGCCAAAGCAATGAATATGTGGCGTGTTTTC
AAGGCGGGAAACAACAAAAAAGTGGACGCACGTCAAGGAAGGGGCCATGA
TCACTCGGAGACACTGCCTAAATACATGTTCTATCAGTTCTTGTGGAGAA
AGCTAGCCAAAAGTCTGAGCACAACAAAACGAAAATCTGGGCAGTAA
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protein sequence of rna10402

>rna10402-protein ID=rna10402-protein|Name=rna10402|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAGERL
WGGGVVRTSEIYMISFISYWTHEVNVLGLESAGVHGIKHLVGLAGDVRRR
LSFSVAMSWLSLFDLQFLFP
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mRNA from alignment at KK037279.1:16165..16586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10402 ID=rna10402|Name=rna10402|organism=Nannochloropsis gaditana|type=mRNA|length=422bp|location=Sequence derived from alignment at KK037279.1:16165..16586- (Nannochloropsis gaditana)
ATGCCGCAAGTCCTTCTCTCTCCCCACAACATGGACATGACAGCCACCTT
CCTCTTCGATTCCGTGCGGTTTTTTACTGAAAATTGCCAGCGTTTTGTCA
AGGGAGGGGCATTGCGGAACTTGGTCGACAAAAAGGCGGGGTATTAGGAT
TTTGCGAGTATGGAAATGGGAAATGTTGAAGCATGGAGGGATAGAGAAGC
GAGCGGCTTTGGGGGGGGGGCGTTGTACGCACGTCGGAGATTTATATGAT
ATCTTTTATTAGTTATTGGACGCATGAGGTGAATGTGCTTGGCTTGGAGA
GTGCTGGAGTGCATGGAATTAAACACCTTGTCGGGCTTGCTGGAGATGTA
CGACGACGACTAAGCTTCAGTGTTGCAATGTCGTGGCTTTCTTTGTTTGA
TTTACAATTTCTTTTCCCTTGA
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Coding sequence (CDS) from alignment at KK037279.1:16165..16586-

>rna10402 ID=rna10402|Name=rna10402|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at KK037279.1:16165..16586- (Nannochloropsis gaditana)
CGAGCGGCTTTGGGGGGGGGGCGTTGTACGCACGTCGGAGATTTATATGA
TATCTTTTATTAGTTATTGGACGCATGAGGTGAATGTGCTTGGCTTGGAG
AGTGCTGGAGTGCATGGAATTAAACACCTTGTCGGGCTTGCTGGAGATGT
ACGACGACGACTAAGCTTCAGTGTTGCAATGTCGTGGCTTTCTTTGTTTG
ATTTACAATTTCTTTTCCCTTGAATGCCGCAAGTCCTTCTCTCTCCCCAC
AACATGGACATGACAGCCACCTTCCTCTTCGATTCCGTGCGGTTTTTTAC
TGAAAATTGCCAGCGTTTTGTCAAGGGAGGGGCATTGCGGAACTTGGTCG
ACAAAAAGGCGGGCGAGCGGCTTTGGGGGGGGGGCGTTGTACGCACGTCG
GAGATTTATATGATATCTTTTATTAGTTATTGGACGCATGAGGTGAATGT
GCTTGGCTTGGAGAGTGCTGGAGTGCATGGAATTAAACACCTTGTCGGGC
TTGCTGGAGATGTACGACGACGACTAAGCTTCAGTGTTGCAATGTCGTGG
CTTTCTTTGTTTGATTTACAATTTCTTTTCCCTTGAATGCCGCAAGTCCT
TCTCTCTCCCCACAACATGGACATGACAGCCACCTTCCTCTTCGATTCCG
TGCGGTTTTTTACTGAAAATTGCCAGCGTTTTGTCAAGGGAGGGGCATTG
CGGAACTTGGTCGACAAAAAGGCGGG
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Synonyms
Publications