EWM20305.1, cds10369 (CDS) Nannochloropsis gaditana

Overview
NameEWM20305.1
Unique Namecds10369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037279.1:16447..16586 -
Alignment locationKK037279.1:16165..16387 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20305.1
Productd-isomer specific 2-hydroxyacid dehydrogenase
Orig transcript idgnl|cribi|Naga_101636g1.7687.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:16447..16586 -
KK037279.1supercontigKK037279.1:16165..16387 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20305.1 vs. NCBI_GenBank
Match: gi|585099787|gb|EWM20305.1| (d-isomer specific 2-hydroxyacid dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 248.054 bits (632), Expect = 2.492e-83
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAGERLWGGGVVRTSEIYMISFISYWTHEVNVLGLESAGVHGIKHLVGLAGDVRRRLSFSVAMSWLSLFDLQFLFP 120
            MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAGERLWGGGVVRTSEIYMISFISYWTHEVNVLGLESAGVHGIKHLVGLAGDVRRRLSFSVAMSWLSLFDLQFLFP
Sbjct:    1 MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAGERLWGGGVVRTSEIYMISFISYWTHEVNVLGLESAGVHGIKHLVGLAGDVRRRLSFSVAMSWLSLFDLQFLFP 120          
BLAST of EWM20305.1 vs. NCBI_GenBank
Match: gi|219114865|ref|XP_002178228.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409963|gb|EEC49893.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 58.151 bits (139), Expect = 1.698e-7
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    1 MPQVLLSPHNMDMTATFLFDSVRFFT-ENCQRFVKGGALRNLVDKKAG 47
            M  VLLSPHNMD TATF+ ++  F+  EN  RFV+G  L N+VD KAG
Sbjct:  362 MDNVLLSPHNMDQTATFMHEATEFYVEENLPRFVRGQELLNIVDAKAG 409          
BLAST of EWM20305.1 vs. NCBI_GenBank
Match: gi|1072226883|gb|OEU11623.1| (2-Hacid_dh_C-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 56.6102 bits (135), Expect = 3.652e-7
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    3 QVLLSPHNMDMTATFLFDSVRFFT-ENCQRFVKGGALRNLVDKKAG 47
             VLLSPHNMD T TF+ +S +FF  EN  RF+ G  L N VDKKAG
Sbjct:  202 NVLLSPHNMDQTDTFMLESTQFFVEENLPRFLHGHPLLNPVDKKAG 247          
BLAST of EWM20305.1 vs. NCBI_GenBank
Match: gi|115364348|gb|EAU63432.1| (D-isomer specific 2-hydroxyacid dehydrogenase family protein [Stigmatella aurantiaca DW4/3-1] >gi|309393685|gb|ADO71144.1| D-isomer specific 2-hydroxyacid dehydrogenase domain protein [Stigmatella aurantiaca DW4/3-1])

HSP 1 Score: 53.1434 bits (126), Expect = 6.236e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    1 MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAG 47
            +  VLLSPH  D T T+  DSV FF +N +RF +G  L NLVDK+AG
Sbjct:   31 LENVLLSPHCADHTPTWREDSVAFFLKNLERFEQGAPLLNLVDKRAG 77          
BLAST of EWM20305.1 vs. NCBI_GenBank
Match: gi|1174252582|ref|WP_081465923.1| (hydroxyacid dehydrogenase [Stigmatella aurantiaca])

HSP 1 Score: 53.1434 bits (126), Expect = 6.453e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    1 MPQVLLSPHNMDMTATFLFDSVRFFTENCQRFVKGGALRNLVDKKAG 47
            +  VLLSPH  D T T+  DSV FF +N +RF +G  L NLVDK+AG
Sbjct:   32 LENVLLSPHCADHTPTWREDSVAFFLKNLERFEQGAPLLNLVDKRAG 78          
The following BLAST results are available for this feature:
BLAST of EWM20305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585099787|gb|EWM20305.1|2.492e-83100.00d-isomer specific 2-hydroxyacid dehydrogenase [Nan... [more]
gi|219114865|ref|XP_002178228.1|1.698e-758.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072226883|gb|OEU11623.1|3.652e-760.872-Hacid_dh_C-domain-containing protein [Fragilario... [more]
gi|115364348|gb|EAU63432.1|6.236e-755.32D-isomer specific 2-hydroxyacid dehydrogenase fami... [more]
gi|1174252582|ref|WP_081465923.1|6.453e-755.32hydroxyacid dehydrogenase [Stigmatella aurantiaca][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10402rna10402Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications