rna1040, rna1040 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1040
Unique Name	rna1040
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	849
Alignment location	CM002456.1:1025620..1027169 +

Link to JBrowse

Properties


Property Name	Value
Product	tropinone reductase
Orig transcript id	gnl\|cribi\|Naga_100050g18.6849.mrna
Orig protein id	gnl\|cribi\|Naga_100050g18.6849
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1025620..1027169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g18	gene1002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1040	rna1040-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29626.1	cds1039	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1025620..1027169+
coding sequence from alignment at CM002456.1:1025620..1027169+

mRNA sequence

>rna1040 ID=rna1040|Name=rna1040|organism=Nannochloropsis gaditana|type=mRNA|length=849bp
ATGTTCGAGAGCTTTTTACAAACTCTGGAGGCTTTTCGTCAAGATAAGAC
AGCAGCGGCTATGCTAGCAGCGACGGTGGCTGTGACGGTCACTGTTTTCT
ACTGGGTGACAAAAGACCCCCCCTTACCAAAAGGGCCCGGGGGAAAGGCT
CCCGACGAGGAGCCTGAGCCCCCGCGCAATTTTACGGCCACGCAACTTCG
AGAATTTACAGGAACAAAAGAAGACGATCCAATCTATGTGGCATTGCAGG
GAGACGTGTACGATGTCTCATCAGCGCGAGATTTTTACGGCCCCGATGGG
GTGTACGGCGGCTTCGCGGGTCATGACGTGACCAGAGCCTTCGCGCTAAA
TTCACTGGAAGAGAAGGATCTGGACGACCCGAACTTGGAAGATTTGACCT
ACACGCAAAAGGAGTCCTTGCACGGATGGGTAGAGAAGTACAAATACTAT
AAGTGCTACCCCGTGGTCGGCCGCCTAGTCACGCCTCCCTCAGGCCTGAG
TCTGACCCTCGCAGAAATCGCGCAATACAAGGGGGAAGAGCCGAAAGAAG
GAGACGCACAAACGATTCCGGAGGGCTGGGCGGCGCCCCCCATCTATGTA
GCGGTCGCAGGGAAGGTCTTTGACATGTCATTTGGTGGCCGCATGTTCTA
CGGCCCGGGGGGGCCTTACCATTTCTTAGCGGGCAAGGATGGCTCCCGAC
CGCTGGCCAAGATGTCGTTCGAGAAAGCAGACGCGGAGAGTAGGAACCTG
TCCGATCTGACCGATCGGCAACGACAAACCTTGGAGGAATGGGTTGAGAA
ATTTATCAATGGCCGCAAATATCCTGTGGTGGGCAAGCTTATCGATTGA

protein sequence of rna1040

>rna1040-protein ID=rna1040-protein|Name=rna1040|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MATATPPIGSPARWRLDGQTVLCTGGTKGIGKAIVEEFASLGARVFTCAR
SASDLAACLKEWTAKGYEVEGIAVDVSDSDARRAMMEQVAGSFVGRLDVL
VNNVGTNIRKPTAQYTEDQYDKIMDINLKSTYHLCQLAHPLLKKAGKGCV
INVGSVAGVIGIKSGSVYGLTKAAMVQLSKNLACEWASDGIRVNTVAPWY
IETPLTAQVLGDPVYRKEVEDRTPMKRVGSSEEISGICAFLAMSGSSYIT
GQTVCVDGGFTVNGFY

mRNA from alignment at CM002456.1:1025620..1027169+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1040 ID=rna1040|Name=rna1040|organism=Nannochloropsis gaditana|type=mRNA|length=1550bp|location=Sequence derived from alignment at CM002456.1:1025620..1027169+ (Nannochloropsis gaditana)
tttcccaGGGCTTTTGGCGAGGCACCGGATCGAGCAAAGTGAAGGAAGTG
ATCTACCCTAAAAAGAATTATTACGGCTTTCTTTGGGCACATAGGAGCAC
TTAAAATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGG
CTTGATGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAA
AGCTATAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTG
CACGCTCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAG
GGGTACGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCG
CCGTGCTATGATGGAGCAAGTAGCCGGATCGTttgtggggaggttggacg
TTCTCGTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTAC
ACGGAAGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATA
TCATTTGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGAT
GCGTGATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGT
GAGTAACGTATTGAAATGTCGCAAACCTTGTTGAAGGGACGATTCTTGCG
CTGATAAAAGGTTCTGCTTGAGCTGTCATGGCCGTGTACTTACACACTAT
CTAACTCGTCGATGCCCGTCGACCAGTCCCACAGAATTTTGACGCCGAAA
TAAATCCCTCTGCCCCATCTGGAAAGCCCTCATCACCATATTGCCCTCCA
AAATTCCCCCCAACCATTATTTTCCCACAAGGTTCTGTGTACGGCTTGAC
AAAGGCCGCAATGGTTCAGCTATCTAAAAACCTAGCCTGTGAATGGGCTT
CAGACGGTATTCGAGTCAACACTGTCGCACCATGGTGGGTCAGGATTCGA
AAGGGTGCAGCGGTTCCTCGTAGGCTCCAACCTTGCTGCCACTAGACTTT
GCGCGAAGAAATTGAGATACTTCTCACACGcgcctctcttttctccagGT
ACATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTACCGC
AAAGAAGTAGAAGATCGAACACCCATGAAGCGGTACGTAAATGCAGGGAG
CCGGAAGGCATGATGATTGTCTGACAGTGCTGGAGGGTGACTTCGACGGC
ATTAGGATGTGGGAGTCCCCTCACATATGTCTCACGCGCATGACTTGCGC
TGTGCATACATGTATTTTAGAGTCGGGTCGTCAGAGGAGATCAGCGGTAT
CTGCGCCTTTTTGGCGATGTCAGGATCTTCATACATAACCGGACAAACGG
TTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTCTACTAAGCTATtaag
aaagcggaggagtGATTTTAATGCGTTTCTTCTCCTTAAAATGCAAGCTT
TATAGATTTCTTCTCCTTAAAATGCAAGCATTATAGATTGGATACGAGAA
GGAATTTTAGACGACGCTCTCATAAATTATGATGTGTGACTTTTGCTTGC

Coding sequence (CDS) from alignment at CM002456.1:1025620..1027169+

>rna1040 ID=rna1040|Name=rna1040|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002456.1:1025620..1027169+ (Nannochloropsis gaditana)
ATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGGCTTGA
TGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAAAGCTA
TAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTGCACGC
TCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAGGGGTA
CGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCGCCGTG
CTATGATGGAGCAAGTAGCCGGATCGTttgtggggaggttggacgTTCTC
GTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTACACGGA
AGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATATCATT
TGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGATGCGTG
ATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGTTCTGT
GTACGGCTTGACAAAGGCCGCAATGGTTCAGCTATCTAAAAACCTAGCCT
GTGAATGGGCTTCAGACGGTATTCGAGTCAACACTGTCGCACCATGGTAC
ATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTACCGCAA
AGAAGTAGAAGATCGAACACCCATGAAGCGAGTCGGGTCGTCAGAGGAGA
TCAGCGGTATCTGCGCCTTTTTGGCGATGTCAGGATCTTCATACATAACC
GGACAAACGGTTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTCTACTA
AATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGGCTTG
ATGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAAAGCT
ATAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTGCACG
CTCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAGGGGT
ACGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCGCCGT
GCTATGATGGAGCAAGTAGCCGGATCGTttgtggggaggttggacgTTCT
CGTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTACACGG
AAGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATATCAT
TTGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGATGCGT
GATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGTTCTG
TGTACGGCTTGACAAAGGCCGCAATGGTTCAGCTATCTAAAAACCTAGCC
TGTGAATGGGCTTCAGACGGTATTCGAGTCAACACTGTCGCACCATGGTA
CATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTACCGCA
AAGAAGTAGAAGATCGAACACCCATGAAGCGAGTCGGGTCGTCAGAGGAG
ATCAGCGGTATCTGCGCCTTTTTGGCGATGTCAGGATCTTCATACATAAC
CGGACAAACGGTTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTCTACT
AAATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGGCTT
GATGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAAAGC
TATAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTGCAC
GCTCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAGGGG
TACGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCGCCG
TGCTATGATGGAGCAAGTAGCCGGATCGTttgtggggaggttggacgTTC
TCGTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTACACG
GAAGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATATCA
TTTGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGATGCG
TGATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGTTCT
GTGTACGGCTTGACAAAGGCCGCAATGGTTCAGCTATCTAAAAACCTAGC
CTGTGAATGGGCTTCAGACGGTATTCGAGTCAACACTGTCGCACCATGGT
ACATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTACCGC
AAAGAAGTAGAAGATCGAACACCCATGAAGCGAGTCGGGTCGTCAGAGGA
GATCAGCGGTATCTGCGCCTTTTTGGCGATGTCAGGATCTTCATACATAA
CCGGACAAACGGTTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTCTAC
TAAATGGCCACCGCTACCCCTCCCATCGGGTCTCCTGCCCGGTGGCGGCT
TGATGGTCAGACAGTTTTGTGCACGGGTGGCACCAAGGGCATCGGAAAAG
CTATAGTGGAAGAGTTTGCTTCGTTGGGAGCACGCGTCTTCACCTGTGCA
CGCTCTGCTTCGGATTTAGCTGCTTGTTTGAAGGAATGGACAGCTAAGGG
GTACGAAGTGGAAGGAATTGCGGTGGATGTTAGTGACAGCGACGCCCGCC
GTGCTATGATGGAGCAAGTAGCCGGATCGTttgtggggaggttggacgTT
CTCGTCAACAACGTGGGCACCAACATCCGGAAACCTACGGCGCAGTACAC
GGAAGATCAGTACGATAAAATCATGGATATCAACCTGAAAAGCACATATC
ATTTGTGCCAGCTCGCCCACCCGTTGCTTAAAAAAGCAGGGAAAGGATGC
GTGATTAATGTAGGGAGTGTAGCAGGCGTGATAGGCATCAAGTCAGGTTC
TGTGTACGGCTTGACAAAGGCCGCAATGGTTCAGCTATCTAAAAACCTAG
CCTGTGAATGGGCTTCAGACGGTATTCGAGTCAACACTGTCGCACCATGG
TACATCGAAACGCCCCTCACAGCTCAGGTCCTTGGTGATCCTGTCTACCG
CAAAGAAGTAGAAGATCGAACACCCATGAAGCGAGTCGGGTCGTCAGAGG
AGATCAGCGGTATCTGCGCCTTTTTGGCGATGTCAGGATCTTCATACATA
ACCGGACAAACGGTTTGCGTAGACGGTGGCTTCACTGTTAACGGTTTCTA
CTAA

Synonyms

Publications