rna10397, rna10397 (mRNA) Nannochloropsis gaditana

Overview
Namerna10397
Unique Namerna10397
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1314
Alignment locationKK037279.1:11500..12064 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101480g2.9900.mrna
Orig protein idgnl|cribi|Naga_101480g2.9900
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:11500..12064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101480g2gene10101Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10397rna10397-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20307.1cds10365Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10397 ID=rna10397|Name=rna10397|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp
ATGTCCTCTTTCATCCATTTTTGTTGGGTTCTAGGAGGCAACGGCTTGGG
CGCCACAGCTCCATTATTCCCTCCACCCCGAGACTTGCGCTTCTGTATCA
AACAGTTGCGCCGTGCTCTGGCTGCCAGAGGTTTCAAGTTACATACATTC
TCAGGTTCTGAAACCGCTGCAGCCTCTTGGAGGGATATAGGAGGATGTTC
GCCCAATTTGCTTGGATTGTTGGTAGTGTACGGGGCTCTGGGCGCTTTCG
GCTTCGGCTGGGGGACAGGAGCGAACGATGTGGGCAATGCGTTTGGGACC
TCGGTGGGAGCAAAGACGTTGACCATGATCCAAGCCTGTACGATTGCGGC
AATTTTTGAGTTTGGAGGTGCCATGGTCTTGGGGCGGGTGTCGACGCAAA
CGATCGCCGGGAGCATTGCCAATCCGGAGGAGTTTCAGGATAATCCGATG
ATTTACGCCTATGGAATGGCGTGTACCCTGTTTGTAGGGACGGTCTGGCT
GGCGGTGGCGAGCTACTATGGATGGAACGTGTCGTCCACCCACTCCATAA
TTGGTGGCATCATTGGCTTTGCATGGGTATACCGAGGGTTCAACGGCGTG
AATTGGATGGAGTACGACCCCACGATGTGGCCACCTTATCGAGGAATCCT
CCCTATCGTCCTCTCCTGGTTCATTGCGCCGGGCATGGCAGCGTTGGCAG
CCGGTATTATTTTCGGCTTTTGTCGGTATTTTGTCCTTCGCCACGCCGAC
GCGGAACGCCGGGCGATCTACGTGGCACCGCCCTTGGTTTTCCTTACGGC
CTTTATCAACGTCTACTTTGTCTTCACCAAGGGAGCGAAAAAAACGATCG
TGGCGCAAAATCCAGGGTGGACGGACCGCACCTCCGTCTGGGTGTCCTTC
CTCATCGCCGTCGGCGCGGGGTTGATCACCCTGGCCTCTGTACCCTGGAT
GCGGAGAAAGATTTTGGCGGCGGAGGAGAAGAAGAAACGGGACGCGGAGG
AACGGATCGAAATGGCGGAACGGGCCGCCCGAGACGCCTTAGAGGCCGAG
AAACGGAAGCAGGACAGCGACGGGACGGAGGAGGAGGAGGAAGGGGAGGG
GGAGGGAGGGAAGGAGGGAGGGAGGAAGACACGCAGGGATTACATGCAGA
TGGCGAAGAAGGCCCTGCTGCACGGGGTGACGGTCGACATCCATGAAATC
GTGAAAACCGATGCCACCGTGGCCAACATCCACAGCACTGCGGAAGTGTT
TGATACTCGGGCAGAATCCATTTTTTCCTACTTGCAAGTCTTCAGTGCCA
TTTGCGTCATCTGA
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protein sequence of rna10397

>rna10397-protein ID=rna10397-protein|Name=rna10397|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
SSSLLPSLPPCAVHRGWHRGRGVHGGADGGELEILRHYLRELGVYPGDYG
RRDGSLLCSGGVRSVCLREGGREREERLLVLNGGWKRARRKEEGGGEGHE
GKEGKVAAQQIGRKGGETSQSSTVPGYFEGELSIQAESFLPCKYIHVILV
RNGALNIGIVRIGNEFGAGRESVVNVFRCVN
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mRNA from alignment at KK037279.1:11500..12064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10397 ID=rna10397|Name=rna10397|organism=Nannochloropsis gaditana|type=mRNA|length=565bp|location=Sequence derived from alignment at KK037279.1:11500..12064+ (Nannochloropsis gaditana)
tcttcctccctccttccctccctccctccctgcgcagTGCATCGTGGGTG
GCATCGTGGGCGTGGGgtgcatggaggggcagaCGGGGGTGAACTGGAAA
TTCTTCGGCATTACCTTCGCGAGTTGGGTGTCTACCCTGGGGATTatggg
cggagggacggCTCTTTGCTTTGCTCAGGCGGTGTACGCTCCGTgtgctt
gagggagggagggagggagagggaggaaaggctaCTTGTTCTAAACggag
gatggaaaagggcgaggaggaaggaggaagggggaggggaaggacacgaa
gggaaggaggggaaggtggctGCCCAGCAAatcggaagaaaaggagggga
aacgtCGCAATCTAGCACGGTGCCAGGATATTTTGAAGGAGAGCTTTCTA
TCCAGGCTGAATCATTCCTCCCCTGCAAGTATATACATGTAATATTGGTT
AGGAATGGGGCGCTGAACATAGGGATAGTAAGGATTGGGAATGAAtttgg
agcaggaagagagagcGTTGTGAATGTTTTTCGATGCGTAAATTAAAGTT
TTTTGCCAACTTGAA
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Coding sequence (CDS) from alignment at KK037279.1:11500..12064+

>rna10397 ID=rna10397|Name=rna10397|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at KK037279.1:11500..12064+ (Nannochloropsis gaditana)
tcttcctccctccttccctccctccctccctgcgcagTGCATCGTGGGTG
GCATCGTGGGCGTGGGgtgcatggaggggcagaCGGGGGTGAACTGGAAA
TTCTTCGGCATTACCTTCGCGAGTTGGGTGTCTACCCTGGGGATTatggg
cggagggacggCTCTTTGCTTTGCTCAGGCGGTGTACGCTCCGTgtgctt
gagggagggagggagggagagggaggaaaggctaCTTGTTCTAAACggag
gatggaaaagggcgaggaggaaggaggaagggggaggggaaggacacgaa
gggaaggaggggaaggtggctGCCCAGCAAatcggaagaaaaggagggga
aacgtCGCAATCTAGCACGGTGCCAGGATATTTTGAAGGAGAGCTTTCTA
TCCAGGCTGAATCATTCCTCCCCTGCAAGTATATACATGTAATATTGGTT
AGGAATGGGGCGCTGAACATAGGGATAGTAAGGATTGGGAATGAAtttgg
agcaggaagagagagcGTTGTGAATGTTTTTCGATGCGTAAATTAA
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Synonyms
Publications