rna10393, rna10393 (mRNA) Nannochloropsis gaditana

Overview
Namerna10393
Unique Namerna10393
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length803
Alignment locationKK037279.1:3497..5303 -

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Properties
Property NameValue
ProductUbiquitin
Orig transcript idgnl|cribi|Naga_101431g2.5766.mrna
Orig protein idgnl|cribi|Naga_101431g2.5766
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:3497..5303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101431g2gene10097Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10393rna10393-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20311.1cds10361Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10393 ID=rna10393|Name=rna10393|organism=Nannochloropsis gaditana|type=mRNA|length=803bp
ATGACTGGGCTGATGCTTGCCTCCGAAAGTGGTCACCTTAACATTGTGCG
GCTTCTTCTGCAAAATGGCGCGAATGTGGAAGCACGCGATGGGAATGGCT
CCACTGCGCTCCTGTTGGCCTGCCTGGAGGGACACGTCCAGCTGGCGGCC
TCGGGCGGCTTCGAGGCCTGTGTCTCCTTTCTCTTGGAGCGCGGCGCCTC
TCCCTCAGCCACCAGCAAAGGAGGGAGGACGGCATTGCACTGGGCAGCTC
GGCACGGGGACTGGGGTGTGTGCCAGCTCCTCCTTGCCGGTGGGGCCGAT
CCCTCCGCGGAGGACAAGCGCGGTCTGAGCCCCCTCGCCCTGGCCCGCCG
TCAACATCATCGACAGTGTGCCACGCTCCTTCTCCAGGCAGAGCAAGCGC
AGGAATGAGGTCTCGATGATTCGCCTTTGATCCTTCAATCCGTCAACACG
AAAGGAAACACCAAGAGCGCGCGGGAGCGAAACGAGGGAGGGAGGAAGGC
AAAGGAGGGAGAGGATACGAGGCCGTAGAATGATCAGTTCTTAGGGCTAG
GGTTAGTAACCGGATGGTTTGAATCTGAAAGGAGGGAGATAGGAAAGGAT
TTTTGACAAGATCGGCGATGATTTGTGTGTAGAATTGCGGGGGGGGAGAG
GGTCGAGCATGAACGGGGTAAACAAACGCCCATGTAGGCACGCAAGTAAA
GTCACCACCTTATAAAGGCGAGCCTCAAAAGCGCGCGCACCGGCATCTGA
TTTTCGATCGTGGAGCTTTGTGTGGCGTCGAGTCCGCTTATTCAATGCCT
GCC
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protein sequence of rna10393

>rna10393-protein ID=rna10393-protein|Name=rna10393|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MRSPPLRPSLHLFFLLSLLALVWSPASFPGATAVDVQEVAGLEGDAVGGG
PSSSSSSLTLVYFGMPFKIDDLDFSEAAGLTIADVKKRIEAEYAIPATEQ
SLFLGTSLLDDTATLSAANITPGSTLEVRHEIALKEGVELPAEKHDFSFE
ELKEYFNIDLASFRAKWEATQEEMKQEVLESVEEGRQILQHVGASLRKLG
HFFQKMARKCLGLLQAVGRLFTGGKKGGKEEL
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mRNA from alignment at KK037279.1:3497..5303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10393 ID=rna10393|Name=rna10393|organism=Nannochloropsis gaditana|type=mRNA|length=1807bp|location=Sequence derived from alignment at KK037279.1:3497..5303- (Nannochloropsis gaditana)
GTGTTGTAGACTTTCCCTTTGCCCCTCTCTCTCGCTGTTTCCTCCATCTC
TTTGTCGAGATGCCTCTCGCGTGTGAAAATTGGACACGAAGGGGCCGTGC
ACGTGCATTCAGGGGTGCGACGTGGATCATCGTGTGTCCGTGATGTCGGC
GGTTGCCTGCAAGACCTCATATTTTTTATGTGTTGGCCGGCTTTTATCTT
GACTGCGTGCGTGCTGTCGCAATCTCTTCACAAGAACCACCCCCCCTGAA
GTACTTCCTTTCTTCCCCTCCTCCCTCCCGCCCTCCCTCCCTTCTCTCTC
ACGTACGTTCCACGCTTGATTTGCATTTCCCCCTACAGCGGTGAAGATTC
CAGGATTTCTCTTCCTTTCAGCCAACCCAGCTCCACCATGCGCTCCCCTC
CGCTCCGTCCCTCCCTCCACCTCTTCTTCCTTCTCTCCCTGCTCGCCTTG
GTCTGGTCTCCTGCCTCCTTCCCTGGGGCTACCGCTGTCGACGTTCAAGA
AGTAGCCGGTCTGGAAGGCGATGCCGTCGGGGGGGGTCCTTCCTCCTCCT
CTTCTTCACTTACTTTGGTGTACTTTGGGATGCCGTTTAAGATCGATGAC
CTTGATTTTTCCGAAGCGGCAGGACTGACCATTGCGGACGTCAAGAAGAG
GATCGAAGCCGAGTACGCGATTCCTGCAACGGAGCAGGTATGTTGTCCAT
CCCTCCTTGCCATCTTTTCTCCCGCCCGTCGACCTGGCTCTCCTCCTTCG
TTTCACTCGTGGTTGGCTCTTCTCTCCCTTGTTGTGGACCCCTTCGTGGC
ATACACGCTCAAACCACGTACTTGACCTTCCTCTCCCTCCCCCCCTCCTT
CCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCCTTTATCATGTCTTCCCCC
CTCCCTCCCTCCCCCTCTCCCTTCGTCCCTCCCTTCTTCCCTCCCTTCCT
CCCTCCCTTTCTCCTCCTCTCCCTCGACCAGTCCCTCTTCTTGGGGACCT
CCCTATTGGACGACACCGCCACCTTAAGCGCAGCCAACATCACCCCTGGT
TCCACGCTTGAAGTGAGGTGAGTAACGGTTCACGTAACGGTTTTTTGAAT
ATTTGGCCACCTGTCGATGCCAGGAACATGCGGCGTCGATCCCTTTTGCC
TCATCCTAGCACCCGTCACTGCCCTCGCACAGGCACGAAATCGCCTTGAA
AGAAGGAGTGGAGCTCCCCGCGGAGAAACATGACTTCTCCTTTGAGGAAC
TTAAGGAGTACTTTAACATCGATTTGGCAAGTTTTCGCGCCAAATGGGAG
GCAACTCAGGAGGAAATGAAGCAGGAGGTGTTGGAAAGCGTGGAGGAAGG
CCGGCAAATTTTGCAACATGTGGGCGCGAGCCTCCGGAAGCTCGGGCATT
TTTTCCAAAAAATGGCGCGAAAATGTCTGGGGCTCCTTCAGGCGGTGGGG
AGGTTGTTCACGGGAGGGAAGAAGGGAGGGAAGGAGGAGCTGTAAAGGCA
ACGGATCAAGGGAGGAGAGGTGCAGGGAGGGAGGAGGGGAAGGAGGAAAA
GAGGGGAGGGCGCAAAAAAGGGTTGATATTTAAGGGGAGGGAGGAGGGGA
AGGAGGAAGGGAGGGGAGGGCGCAAAAAAGGGTTGATATTTAAAACTCGA
GCGAGCGAAGGAGGGGGAAATGAAACGAAAAAATGAGGAGGACAGGAGCG
AGAGGATGCAGCAAAACGGGCTCGAGAAGGGGCTGAATTGATTTAACAAA
ACATGGTGTGAGAGGTCTCCCTGGCCGGCAGAAAGAGTGTGGGAGGGAAG
GAGGGAG
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Coding sequence (CDS) from alignment at KK037279.1:3497..5303-

>rna10393 ID=rna10393|Name=rna10393|organism=Nannochloropsis gaditana|type=CDS|length=2097bp|location=Sequence derived from alignment at KK037279.1:3497..5303- (Nannochloropsis gaditana)
GCACGAAATCGCCTTGAAAGAAGGAGTGGAGCTCCCCGCGGAGAAACATG
ACTTCTCCTTTGAGGAACTTAAGGAGTACTTTAACATCGATTTGGCAAGT
TTTCGCGCCAAATGGGAGGCAACTCAGGAGGAAATGAAGCAGGAGGTGTT
GGAAAGCGTGGAGGAAGGCCGGCAAATTTTGCAACATGTGGGCGCGAGCC
TCCGGAAGCTCGGGCATTTTTTCCAAAAAATGGCGCGAAAATGTCTGGGG
CTCCTTCAGGCGGTGGGGAGGTTGTTCACGGGAGGGAAGAAGGGAGGGAA
GGAGGAGCTGTAATCCCTCTTCTTGGGGACCTCCCTATTGGACGACACCG
CCACCTTAAGCGCAGCCAACATCACCCCTGGTTCCACGCTTGAAGTGAGA
TGCGCTCCCCTCCGCTCCGTCCCTCCCTCCACCTCTTCTTCCTTCTCTCC
CTGCTCGCCTTGGTCTGGTCTCCTGCCTCCTTCCCTGGGGCTACCGCTGT
CGACGTTCAAGAAGTAGCCGGTCTGGAAGGCGATGCCGTCGGGGGGGGTC
CTTCCTCCTCCTCTTCTTCACTTACTTTGGTGTACTTTGGGATGCCGTTT
AAGATCGATGACCTTGATTTTTCCGAAGCGGCAGGACTGACCATTGCGGA
CGTCAAGAAGAGGATCGAAGCCGAGTACGCGATTCCTGCAACGGAGCAGG
CACGAAATCGCCTTGAAAGAAGGAGTGGAGCTCCCCGCGGAGAAACATGA
CTTCTCCTTTGAGGAACTTAAGGAGTACTTTAACATCGATTTGGCAAGTT
TTCGCGCCAAATGGGAGGCAACTCAGGAGGAAATGAAGCAGGAGGTGTTG
GAAAGCGTGGAGGAAGGCCGGCAAATTTTGCAACATGTGGGCGCGAGCCT
CCGGAAGCTCGGGCATTTTTTCCAAAAAATGGCGCGAAAATGTCTGGGGC
TCCTTCAGGCGGTGGGGAGGTTGTTCACGGGAGGGAAGAAGGGAGGGAAG
GAGGAGCTGTAATCCCTCTTCTTGGGGACCTCCCTATTGGACGACACCGC
CACCTTAAGCGCAGCCAACATCACCCCTGGTTCCACGCTTGAAGTGAGAT
GCGCTCCCCTCCGCTCCGTCCCTCCCTCCACCTCTTCTTCCTTCTCTCCC
TGCTCGCCTTGGTCTGGTCTCCTGCCTCCTTCCCTGGGGCTACCGCTGTC
GACGTTCAAGAAGTAGCCGGTCTGGAAGGCGATGCCGTCGGGGGGGGTCC
TTCCTCCTCCTCTTCTTCACTTACTTTGGTGTACTTTGGGATGCCGTTTA
AGATCGATGACCTTGATTTTTCCGAAGCGGCAGGACTGACCATTGCGGAC
GTCAAGAAGAGGATCGAAGCCGAGTACGCGATTCCTGCAACGGAGCAGGC
ACGAAATCGCCTTGAAAGAAGGAGTGGAGCTCCCCGCGGAGAAACATGAC
TTCTCCTTTGAGGAACTTAAGGAGTACTTTAACATCGATTTGGCAAGTTT
TCGCGCCAAATGGGAGGCAACTCAGGAGGAAATGAAGCAGGAGGTGTTGG
AAAGCGTGGAGGAAGGCCGGCAAATTTTGCAACATGTGGGCGCGAGCCTC
CGGAAGCTCGGGCATTTTTTCCAAAAAATGGCGCGAAAATGTCTGGGGCT
CCTTCAGGCGGTGGGGAGGTTGTTCACGGGAGGGAAGAAGGGAGGGAAGG
AGGAGCTGTAATCCCTCTTCTTGGGGACCTCCCTATTGGACGACACCGCC
ACCTTAAGCGCAGCCAACATCACCCCTGGTTCCACGCTTGAAGTGAGATG
CGCTCCCCTCCGCTCCGTCCCTCCCTCCACCTCTTCTTCCTTCTCTCCCT
GCTCGCCTTGGTCTGGTCTCCTGCCTCCTTCCCTGGGGCTACCGCTGTCG
ACGTTCAAGAAGTAGCCGGTCTGGAAGGCGATGCCGTCGGGGGGGGTCCT
TCCTCCTCCTCTTCTTCACTTACTTTGGTGTACTTTGGGATGCCGTTTAA
GATCGATGACCTTGATTTTTCCGAAGCGGCAGGACTGACCATTGCGGACG
TCAAGAAGAGGATCGAAGCCGAGTACGCGATTCCTGCAACGGAGCAG
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Synonyms
Publications