EWM20311.1, cds10361 (CDS) Nannochloropsis gaditana

Overview
NameEWM20311.1
Unique Namecds10361
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037279.1:4617..4916 -
Alignment locationKK037279.1:4237..4322 -
Alignment locationKK037279.1:3809..4121 -

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Properties
Property NameValue
Protein idEWM20311.1
ProductUbiquitin
Orig transcript idgnl|cribi|Naga_101431g2.5766.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:4617..4916 -
KK037279.1supercontigKK037279.1:4237..4322 -
KK037279.1supercontigKK037279.1:3809..4121 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
[Close]
BLAST of EWM20311.1 vs. NCBI_GenBank
Match: gi|553187287|ref|XP_005854577.1| (hypothetical protein NGA_0174300 [Nannochloropsis gaditana CCMP526] >gi|422294483|gb|EKU21783.1| hypothetical protein NGA_0174300 [Nannochloropsis gaditana CCMP526] >gi|585099797|gb|EWM20311.1| Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 466.463 bits (1199), Expect = 3.674e-166
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 
Query:    1 MRSPPLRPSLHLFFLLSLLALVWSPASFPGATAVDVQEVAGLEGDAVGGGPSSSSSSLTLVYFGMPFKIDDLDFSEAAGLTIADVKKRIEAEYAIPATEQSLFLGTSLLDDTATLSAANITPGSTLEVRHEIALKEGVELPAEKHDFSFEELKEYFNIDLASFRAKWEATQEEMKQEVLESVEEGRQILQHVGASLRKLGHFFQKMARKCLGLLQAVGRLFTGGKKGGKEEL 232
            MRSPPLRPSLHLFFLLSLLALVWSPASFPGATAVDVQEVAGLEGDAVGGGPSSSSSSLTLVYFGMPFKIDDLDFSEAAGLTIADVKKRIEAEYAIPATEQSLFLGTSLLDDTATLSAANITPGSTLEVRHEIALKEGVELPAEKHDFSFEELKEYFNIDLASFRAKWEATQEEMKQEVLESVEEGRQILQHVGASLRKLGHFFQKMARKCLGLLQAVGRLFTGGKKGGKEEL
Sbjct:    1 MRSPPLRPSLHLFFLLSLLALVWSPASFPGATAVDVQEVAGLEGDAVGGGPSSSSSSLTLVYFGMPFKIDDLDFSEAAGLTIADVKKRIEAEYAIPATEQSLFLGTSLLDDTATLSAANITPGSTLEVRHEIALKEGVELPAEKHDFSFEELKEYFNIDLASFRAKWEATQEEMKQEVLESVEEGRQILQHVGASLRKLGHFFQKMARKCLGLLQAVGRLFTGGKKGGKEEL 232
The following BLAST results are available for this feature:
BLAST of EWM20311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553187287|ref|XP_005854577.1|3.674e-166100.00hypothetical protein NGA_0174300 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10393rna10393Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications