rna1039, rna1039 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1039
Unique Name	rna1039
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1911
Alignment location	CM002456.1:1024116..1025361 -

Link to JBrowse

Properties


Property Name	Value
Product	heme steroid binding domain-containing
Orig transcript id	gnl\|cribi\|Naga_100050g19.6858.mrna
Orig protein id	gnl\|cribi\|Naga_100050g19.6858
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1024116..1025361 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g19	gene1001	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1039	rna1039-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29635.1	cds1038	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1024116..1025361-
coding sequence from alignment at CM002456.1:1024116..1025361-

mRNA sequence

>rna1039 ID=rna1039|Name=rna1039|organism=Nannochloropsis gaditana|type=mRNA|length=1911bp
ATGGTGGAGGAGGTGCTGCTGAAAAGACTGGGCAAAAGTAGACACTCCGC
CAGCTCTTCTCAGTCTCGAACGTCCCTGACGATGTCGATACGGGTCGCAC
CAAAAGTGTTCTTCCTCGCCTGCTGCTGCCTACTACCCTTCCTCACGTGC
TTGCATGCCTTTCTTGTAGCCCCCTCGTCCTCTTCAGCACTTGCCTTGCT
TAAGCGGTCTGCGGTACCTCCACCGCAGCAGACGGAGGAAGCAGTGCGCT
CGAAGTTACGTGAGAAAAACACAGGGCCGCAATCTGAACCCCCCAGTCCC
TCTACAGGCAATAGCATGATGGAAGAGGACAGCAAAATCATTCAAGAGCT
CACGAAAGAGCGACCATACATCCAGTTTCTTTCCGAAAAGGCTGTAACGG
TGTTGGATGATACTTTTTTGAGCTTAAAGGAGTCCATTACGGCTCCTGAC
CCCTCTGAATTCAGGCGACGAGTCAAAGAGGGCAAGGAGTCAAAGGACAC
ACGGCAACGTATTGTTGTGCTGGGTACGGGATGGGGAGCGCACGCATTCT
TACAGTCCGTGGACGCGGTGAAGTATGAGGTAGTTGTGGTGTCGCCCAGG
AACTTCATGCTATTCACACCCATGCTGGCCGGCTCGGCAGTGGGAACCGT
GGAGTTTCTTAGCATCACTGAGCCCATCCGACGCGTCAATCCCTACGCTG
ACTACCTTGAAGCGACGTGCACGCACGTGAATGCTGCACAAAAAAGCATT
ACCTGCCAGTCCGTCATCTGCGAGGGGAACAGCTGTGACATCGAGGAGTT
CGAGCTTCCCTACGACATGTTGCTGGTGGCCGTCGGGGCAACCACCAACA
CGTACGGGATTCCCGGCGTCAAGGAATACTGCCATTTCCTCAAACAAATC
AACGACGCTGTCAAGCTGCGCACTTCCATCGGCAATGCTTTCGAACGCGC
CAACCTCCCGGGACTGTCAGACGCCCAACGGACGCAGGCCTTGACCTTCG
TCATAGTGGGCGCGGGGCCCACGGGTGTGGAATTCACCGCCGAGCTACGG
GACTTCGTGGAGGAGGACGTGCCCAAATTCTACCCCCACCTCTTACCCTT
CGTCCGGATCAAGCTTGTGGAGGCGAGCGACCGGGTCCTGACCATGTTCG
ACGAGGCTCTCCAGGCTGAGGCCGTCAAGAGGCTGACCGAGGCGCCCCAA
AAGCTGGTGGAGCAAGGGCTGATCGGCGAAGATATGACGGAAGTATTGCT
GAAAGTGGGCGTGAAGGAAGTCAAAAACCGCGACATCGTCCTGTCGGACG
GGAGGAGTCTCCCCTACGGCCTGGCCGTGTGGGCGGCGGGGAACGGGCCC
CTGCCGCTGGTCTCGAACCTGATCAAGCAATTGCCGGAGCAGGAGGAAAA
GCAAGCTTTTGGGCGCGGCCGACTGGTGACGGATGAGTGGCTGCGAGTCA
AAGGCGCAGAGGGGGTGCTGGCGATCGGGGATTGCTGTGTGATCAACGAC
AAGCCCCTGCCGGCCAATGCCCAGGCGGCTTCGCAGCAGGGCTTCTTCCT
TGGTCGCCTCCTAAGCAAGAATATTGATTTCACGCGATCCATTCCAGAGC
GAACAGGCCCGATCACGACGCCTGGCGAGCTTCTTTCCGTGGGAGAGAAG
AGGGAGAACGGGAAAATTTATGCGAAGGGCTTTCAATTCTTAAATCTGGG
TACCCTAGCGTATACAGGTGGAGATAGCGCCTTGGCTCAGATTGCGGTCG
ACAAGAGAGCGATCAAGTCAAGCGGAGAAGCCGGATTTTTGTTATGGCGG
TCGGTCTACTTGTCCAAGCAAGTGAGCCTGCGCAATCGGGCTCTAGTCTT
CTTCGATTGGGTCAAGAGCCGATTGTGGGGCCGCGATCTCACCAGGTTCA
ATGAGACGTAG

protein sequence of rna1039

>rna1039-protein ID=rna1039-protein|Name=rna1039|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MFESFLQTLEAFRQDKTAAAMLAATVAVTVTVFYWVTKDPPLPKGPGGKA
PDEEPEPPRNFTATQLREFTGTKEDDPIYVALQGDVYDVSSARDFYGPDG
VYGGFAGHDVTRAFALNSLEEKDLDDPNLEDLTYTQKESLHGWVEKYKYY
KCYPVVGRLVTPPSGLSLTLAEIAQYKGEEPKEGDAQTIPEGWAAPPIYV
AVAGKVFDMSFGGRMFYGPGGPYHFLAGKDGSRPLAKMSFEKADAESRNL
SDLTDRQRQTLEEWVEKFINGRKYPVVGKLID

mRNA from alignment at CM002456.1:1024116..1025361-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1039 ID=rna1039|Name=rna1039|organism=Nannochloropsis gaditana|type=mRNA|length=1246bp|location=Sequence derived from alignment at CM002456.1:1024116..1025361- (Nannochloropsis gaditana)
ATGTTCGAGAGCTTTTTACAAACTCTGGAGGCTTTTCGTCAAGATAAGAC
AGCAGCGGCTATGCTAGCAGCGACGGTGGCTGTGACGGTCACTGTTTTCT
ACTGGGTGACAAAAGACCCCCCCTTACCAAAAGGGCCCGGGGGAAAGGCT
CCCGACGAGGAGCCTGAGCCCCCGCGCAATTTTACGGCCACGCAACTTCG
AGAATTTACAGGAACAAAAGAAGACGATCCAATCTATGTGGCATTGCAGG
GAGACGTGTACGATGTCTCATCAGCGCGAGATTTTTACGGCCCCGATGGG
GTGTACGGCGGCTTCGCGGGTCATGACGTGACCAGAGCCTTCGCGCTAAA
TTCACTGGAAGAGAAGGATCTGGACGACCCGAAGTAAGTAGGGGGTACCG
TAATTCGCTGTTGCACATCTTGATCGACGTTGCAGCACACACAATTCTTT
TTCTAAGCGAAGACTCATTCAAACTATCCTCTCACTTCTGCCACTGTTTC
CCGACCATTCTTCCATTCTATGCTCACCCATCGTCCAAGCTTGGAAGATT
TGACCTACACGCAAAAGGAGTCCTTGCACGGATGGGTAGAGAAGTACAAA
TACTATAAGTGCTACCCCGTGGTCGGCCGCCTAGTCACGCCTCCCTCAGG
CCTGAGTCTGACCCTCGCAGAAATCGCGCAATACAAGGGGGAAGAGCCGA
AAGAAGGAGACGCACAAACGATTCCGGAGGGCTGGGCGGCGCCCCCCATC
TATGTAGCGGTCGCAGGGAAGGTCTTTGACATGTCATTTGGTGGCCGCAT
GTTCTACGGCCCGGGGGGGCCTTACCATTTCTTAGCGGGCAAGGATGGCT
CCCGACCGCTGGCCAAGGTACGAGCTCGTAAAGAGAAGGGGGCGTGAGAA
ATGTGACAGCCGCTTGAGAAAAGATACACGCCGATTTATGGTCCTACGGC
GCGAGTGATGAGGTGCTGCCTTGAGACAACACCTTGCTGACCCTGAAAGA
CGTATTCGCTAGCGTGTCCTCGGAAGCTTGCTGTGGGGGATTTTTTCAAA
TCCTATGATCGCATTCAGATTGTCTCATGCTTGTATTCCTTCCCTTTGTC
TCACACAGATGTCGTTCGAGAAAGCAGACGCGGAGAGTAGGAACCTGTCC
GATCTGACCGATCGGCAACGACAAACCTTGGAGGAATGGGTTGAGAAATT
TATCAATGGCCGCAAATATCCTGTGGTGGGCAAGCTTATCGATTGA

Coding sequence (CDS) from alignment at CM002456.1:1024116..1025361-

>rna1039 ID=rna1039|Name=rna1039|organism=Nannochloropsis gaditana|type=CDS|length=2547bp|location=Sequence derived from alignment at CM002456.1:1024116..1025361- (Nannochloropsis gaditana)
ATGTCGTTCGAGAAAGCAGACGCGGAGAGTAGGAACCTGTCCGATCTGAC
CGATCGGCAACGACAAACCTTGGAGGAATGGGTTGAGAAATTTATCAATG
GCCGCAAATATCCTGTGGTGGGCAAGCTTATCGATTGACTTGGAAGATTT
GACCTACACGCAAAAGGAGTCCTTGCACGGATGGGTAGAGAAGTACAAAT
ACTATAAGTGCTACCCCGTGGTCGGCCGCCTAGTCACGCCTCCCTCAGGC
CTGAGTCTGACCCTCGCAGAAATCGCGCAATACAAGGGGGAAGAGCCGAA
AGAAGGAGACGCACAAACGATTCCGGAGGGCTGGGCGGCGCCCCCCATCT
ATGTAGCGGTCGCAGGGAAGGTCTTTGACATGTCATTTGGTGGCCGCATG
TTCTACGGCCCGGGGGGGCCTTACCATTTCTTAGCGGGCAAGGATGGCTC
CCGACCGCTGGCCAAGATGTTCGAGAGCTTTTTACAAACTCTGGAGGCTT
TTCGTCAAGATAAGACAGCAGCGGCTATGCTAGCAGCGACGGTGGCTGTG
ACGGTCACTGTTTTCTACTGGGTGACAAAAGACCCCCCCTTACCAAAAGG
GCCCGGGGGAAAGGCTCCCGACGAGGAGCCTGAGCCCCCGCGCAATTTTA
CGGCCACGCAACTTCGAGAATTTACAGGAACAAAAGAAGACGATCCAATC
TATGTGGCATTGCAGGGAGACGTGTACGATGTCTCATCAGCGCGAGATTT
TTACGGCCCCGATGGGGTGTACGGCGGCTTCGCGGGTCATGACGTGACCA
GAGCCTTCGCGCTAAATTCACTGGAAGAGAAGGATCTGGACGACCCGAAA
TGTCGTTCGAGAAAGCAGACGCGGAGAGTAGGAACCTGTCCGATCTGACC
GATCGGCAACGACAAACCTTGGAGGAATGGGTTGAGAAATTTATCAATGG
CCGCAAATATCCTGTGGTGGGCAAGCTTATCGATTGACTTGGAAGATTTG
ACCTACACGCAAAAGGAGTCCTTGCACGGATGGGTAGAGAAGTACAAATA
CTATAAGTGCTACCCCGTGGTCGGCCGCCTAGTCACGCCTCCCTCAGGCC
TGAGTCTGACCCTCGCAGAAATCGCGCAATACAAGGGGGAAGAGCCGAAA
GAAGGAGACGCACAAACGATTCCGGAGGGCTGGGCGGCGCCCCCCATCTA
TGTAGCGGTCGCAGGGAAGGTCTTTGACATGTCATTTGGTGGCCGCATGT
TCTACGGCCCGGGGGGGCCTTACCATTTCTTAGCGGGCAAGGATGGCTCC
CGACCGCTGGCCAAGATGTTCGAGAGCTTTTTACAAACTCTGGAGGCTTT
TCGTCAAGATAAGACAGCAGCGGCTATGCTAGCAGCGACGGTGGCTGTGA
CGGTCACTGTTTTCTACTGGGTGACAAAAGACCCCCCCTTACCAAAAGGG
CCCGGGGGAAAGGCTCCCGACGAGGAGCCTGAGCCCCCGCGCAATTTTAC
GGCCACGCAACTTCGAGAATTTACAGGAACAAAAGAAGACGATCCAATCT
ATGTGGCATTGCAGGGAGACGTGTACGATGTCTCATCAGCGCGAGATTTT
TACGGCCCCGATGGGGTGTACGGCGGCTTCGCGGGTCATGACGTGACCAG
AGCCTTCGCGCTAAATTCACTGGAAGAGAAGGATCTGGACGACCCGAAAT
GTCGTTCGAGAAAGCAGACGCGGAGAGTAGGAACCTGTCCGATCTGACCG
ATCGGCAACGACAAACCTTGGAGGAATGGGTTGAGAAATTTATCAATGGC
CGCAAATATCCTGTGGTGGGCAAGCTTATCGATTGACTTGGAAGATTTGA
CCTACACGCAAAAGGAGTCCTTGCACGGATGGGTAGAGAAGTACAAATAC
TATAAGTGCTACCCCGTGGTCGGCCGCCTAGTCACGCCTCCCTCAGGCCT
GAGTCTGACCCTCGCAGAAATCGCGCAATACAAGGGGGAAGAGCCGAAAG
AAGGAGACGCACAAACGATTCCGGAGGGCTGGGCGGCGCCCCCCATCTAT
GTAGCGGTCGCAGGGAAGGTCTTTGACATGTCATTTGGTGGCCGCATGTT
CTACGGCCCGGGGGGGCCTTACCATTTCTTAGCGGGCAAGGATGGCTCCC
GACCGCTGGCCAAGATGTTCGAGAGCTTTTTACAAACTCTGGAGGCTTTT
CGTCAAGATAAGACAGCAGCGGCTATGCTAGCAGCGACGGTGGCTGTGAC
GGTCACTGTTTTCTACTGGGTGACAAAAGACCCCCCCTTACCAAAAGGGC
CCGGGGGAAAGGCTCCCGACGAGGAGCCTGAGCCCCCGCGCAATTTTACG
GCCACGCAACTTCGAGAATTTACAGGAACAAAAGAAGACGATCCAATCTA
TGTGGCATTGCAGGGAGACGTGTACGATGTCTCATCAGCGCGAGATTTTT
ACGGCCCCGATGGGGTGTACGGCGGCTTCGCGGGTCATGACGTGACCAGA
GCCTTCGCGCTAAATTCACTGGAAGAGAAGGATCTGGACGACCCGAA

Synonyms

Publications