rna1035, rna1035 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1035
Unique Name	rna1035
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2102
Alignment location	CM002456.1:1011460..1014436 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphoglycerate mutase 1 family
Orig transcript id	gnl\|cribi\|Naga_100050g24.6871.mrna
Orig protein id	gnl\|cribi\|Naga_100050g24.6871
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1011460..1014436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g24	gene997	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1035	rna1035-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29648.1	cds1034	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1011460..1014436+
coding sequence from alignment at CM002456.1:1011460..1014436+

mRNA sequence

>rna1035 ID=rna1035|Name=rna1035|organism=Nannochloropsis gaditana|type=mRNA|length=2102bp
GCGCAACGGCACATAAGCTGTACGCGATCCTGATATGTCTTTCACTCTCT
TGTCCATCTCTCAGGGGCGCTTTTAAAACCTCCCTTCGGCCCCTTCGCCT
TTTCCACGCACAGGCCCTTCCTCTTGCGACCATATCGCGCCAGGTTTCAT
GAATCCCTTGCATGGTTTTCGGAGAGTCGTAGCCCTTGGCTCAACAAAGC
ATCCAGCTTTGAGATGCTTGCGCTGCTTGGCTAGCATGTCGGCCCACCAA
CACAGTTCCCCCGACACAGCCGCCACTACTAGCCCTTCCGTCAGCTTCTA
CGAGCAAAGCTCAACCCCCTCATCCACGCCATTTTCAAGGGAGGTGTCTC
CACCAGTATCGAGAAAGAATGACATGGGTGTCACTGAAGCACTCCCATCG
GACTTTCGACAGCACGTCGAACCTGAAACCTCCTCAGCCCAGGTGTCTCA
CCCCCACAGTGCTAGTGAGGGGGACAAGGCGGTCGTGATTCATAACAGCG
CCAATTCTATCGTACAAAGCTTTTATAGACGGCAACTTCCTACGTCACAT
TGCGTTCCATTCAATTCCTCGGAGGGTCGGCGCCTATTTCAGGAGGCATT
GATGCAGGGCGGGTTGGAGAGCTACTTTCCCTTGTCCGAGCAGTTCAAAA
CCCAGGATGATCCCGCTTTTTGTGGCCTGGGGGCATTAACGATGGTGTTG
AACGCTTTGGCGATCGATCCAGGCAGGACATGGAAAGGCCCGTGGCGCTG
GTTCGACGAAAGCATGCTTGAGTGCTGCGAACCCCTGGAGGTGGTCCGAG
AGCGCGGGATCTGCCTAGGGAAGCTTGACTGTCTGGCGCGCTGCAATGGG
GCTACCACCGTCCTTAAGTACGGAGACAGCACGGGGCTCGACGAGTTCCG
GAGGGACATCATTCGAACGACGGGAGGGGGAAGGGAAGCTTGCCATGGAG
GAGGAAAAGAGGGAGCGACGGACTTTTCTCGTGTCCCCGGCACATTGGCC
CGCGCTGAACACACTAATGGTTCCGAACAAACGCACATGCAGTACGAACA
GCAGGACTTGCTCATCGTTGGCTACAACAGGCAGGTGCTGGGGCAGACAG
GGTCGGGCCACTTCTCCCCCGTTGGGGGTTACCACGCAGGAAGGGACATG
GCGCTGATCATGGACGTTGCCCGCTTCAAGTACCCGCCGCACTGGGTTCC
GGTCCCTTTGCTCTGGGAAGCCATGCAGACTGTGGACCCGGAGACGCAGC
GCTCGCGCGGCTACATGGTGGTGGCGAAAGGGATGGTCTCGGAGAGCTTG
CTCTTTACCATCGACAAGTCGCGGTACGAGGAATTCAAGGACCTAGCCTC
TTGGATTCGAAAGGCGGCCGACAGGCTACCCCTTTTGATGGAGGCTGAGA
TGACTAGAAATACGGGGGTGCCGGGAGGAGAAAGCGGGGGGACCGTCGGA
GCAGCCCGACTCGATCATGACAGGCTGTTGCCTTTGTTTTTAGAGTCATT
GCCCGCGAGCATTGCCAGCATGTTTGTCACCATCCATGAATCCTTTTGCC
TTCGATATTCGGAGAAGCATCTCAAGTCCATAGGTGACCTGCTGGGGGCA
ATAGAGGCGCATCCCATCTACGAGACCATGGGGGCACAGCACGAAGCTCG
CTTGGATCGCTTTCGCACCCCTTGTAGTCGTCGACACGTTGCTGCAGAGG
AGGCATGTTGCGCGGGAAAGGTAGTAAACGAGCGCCACGTCCTCACCATT
CTTTATATTTCGATGCTTGAGTGGGTATGCCAGCGTCAAAAATGGTCAAT
ATTTGGCCTCTTTCCGGCTCAAGCGTTACACAGTCCACCTTTGCAGCTGG
AAGTAGCTCAATTGAAGCGGAAAATTGCTGCCATGGCAGATGAAATGGGA
CCAAGGTGATGAAGTGTACCGAATATAAATCAGTGAGATAGGTAATAGAA
ACGCAGTATCGATATGGGTCAAGTAAAGAAGCTCGACTGTGATGCAATGT
GTGGAACGTATCCTGTCCCTCTTTCCTGCGTTTCCACACACAGAACAGGA
AAAACTATGAAATTGTGCTTTTCGTTCGAGTCTTTTAACCACACCCACTC
GC

protein sequence of rna1035

>rna1035-protein ID=rna1035-protein|Name=rna1035|organism=Nannochloropsis gaditana|type=polypeptide|length=571bp
MLTMRRLLNTQPRKTLLHKLFFRVAIFGAIISFRPASAFLSPLVPRCSFT
FRHEVSSTIVCMMAPHRVHGVDSMWNSLHHGSNTTFVSEIEDDVFAGSNS
WAKKVYRALNAATKRKEPGKLIMIRHGESMLNYNKTFTGWIDADLNERGI
RETEHSARLLMERGYEIDVTYTSRLKRAIRSSWILMTELGQIYRPVYKSW
RLNERMYGALEGMSKPGLAEELGEEVVQAFRTGLTTTPPPMTPDHPHWHM
HEKKYADVKPEEIPVTESLQDTMERTLPLWESRILPDLRSGRTVMIVAHA
NSLRGIVKHIDNLNQTEIQSVAIPNGIPLVYKFDKNMVPIEQEGAVSPLT
GEFLEKKGLLRAALAKEAELAASVPGYSTDGGGFRGNANLPVMDARLRGL
AKLSEARQLIAATSLGVPPPLAPLPQAVPATRVAYPRLVVPKAASSPPSA
GAPDAKNAQEHDQIIVIMRHGKTEYNKLGVFTGWEDAPLANEGRIEARNA
GKLLKRHGIELDVVYTSWLSRAIETAWLIVDELDCLWVPIVKSWRLNEVG
REGCQGGSMRGWGSSMCDVSD

mRNA from alignment at CM002456.1:1011460..1014436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1035 ID=rna1035|Name=rna1035|organism=Nannochloropsis gaditana|type=mRNA|length=2977bp|location=Sequence derived from alignment at CM002456.1:1011460..1014436+ (Nannochloropsis gaditana)
GTGCACGAGCCAAGCTACTTCTTTCTGCCTCACCCTAAGATGTATATCTG
CACAATTTAAATAGGCTATCGCCGGCCCTTTACGATTGCTTCGAGCACTG
CCTTGTAGTGGACTGCACAGGGCAACGCATCTCCTACGAAACATCGCACC
CTCATACATTCGtagctccttcctctcctgtcCCCCAGAGAAGTCAAAGT
TTACGTATTACCTTCTTAAATGCTCACGATGCGCCGGCTATTGAACACTC
AACCTCGCAAGACACTCTTGCACAAGCTATTTTTTAGGGTTGCGATCTTC
GGGGCCATCATTTCATTTAGGCCCGCAAGCGCTTTCTTGTCCCCATTGGT
CCCGAGATGTAGTTTTACATTCCGCCATGAAGTCTCATCCACTATAGTGT
GCATGATGGCACCTCACCGAGTACATGGTGTCGACAGTATGTGGAATTCG
CTCCATCACGGAAGCAACACGACTTTCGTTTCCGAAATCGAGGACGACGT
GTTTGCGGGATCAAACTCCTGGGCCAAGAAGGTTTACAGAGCACTCAACG
CCGCCACAAAGCGCAAGGAACCCGGCAAATTGATCATGATCCGCCACGGA
GAGTCCATGCTGAATTACAACAAGACATTCACGGGTTGGATCGACGCGGA
CCTGAACGAACGGGGCATTCGGGAGACGGAGCACTCGGCACGCTTGCTGA
TGGAGCGTGGCTACGAAATCGACGTCACCTACACCTCACGCCTAAAGCGC
GCCATTCGATCGAGTTGGATCCTCATGACGGAGCTGGGGCAGATCTATCG
GCCCGTGTACAAATCCTGGCGCCTGAACGAGAGGATGTACGGAGCCCTCG
AAGGCATGAGCAAGCCCGGGCTGGccgaggagctgggggaggaagtggtc
cAGGCATTCCGCACGGGACTGACcacgacgcctcctcccatgaCGCCCGA
CCACCCCCACTGGCACATGCACGAGAAGAAGTACGCGGACGTGAAGCCGG
AGGAGATCCCCGTCACCGAGTCCCTGCAGGACACCATGGAGCGGACCTTG
CCCCTGTGGGAATCGCGCATCCTCCCAGACCTGCGATCGGGCCGCACCGT
CATGATCGTGGCGCACGCGAACTCGCTCCGGGGCATCGTCAAGCACATCG
ACAACCTGAACCAGACGGAGATCCAGTCGGTGGCCATTCCCAACGGAATC
CCCCTCGTCTACAAGTTCGACAAGAACATGGTGCCTATcgagcaagaggg
agcggtCTCGCCCCTGACGGGAGAGTTCCTCGAGAAGAAAGGACTCCTGC
GCGCTGCCCTTGCGAAAGAGGCAGAGCTGGCCGCCTCCGTGCCTGGGTAC
TCCACCGACGGGGGTGGATTCCGAGGCAATGCCAACTTGCCCGTGATGGA
CGCACGCTTGCGGGGCCTGGCCAAGCTCTCAGAAGCCCGGCAACTTATCG
CAGCCACCAGTTTGGGAGTCCCGCCCCCGcttgctccccttccccaggcT
GTGCCAGCGACTCGCGTGGCTTACCCTCGCCTGGTGGTCCCCAAAGCCGC
GTCTTCGCCGCCGAGTGCCGGGGCACCGGATGCGAAGAACGCGCAAGAGC
ATGACCAAATCATCGTCATCATGCGCCACGGGAAGACCGAGTACAACAAG
CTCGGCGTGTTCACGGGCTGGGAAGACGCCCCCTTGGCCAACGAGGGTCG
GATCGAGGCGCGCAACGCGGGGAAGCTCCTGAAGCGGCACGGCATCGAGC
TCGACGTCGTCTACACCTCCTGGCTCTCCCGGGCTATTGAGACGGCCTGG
TTGATTGTGGACGAGCTGGACTGCCTCTGGGTGCCGATTGTCAAGTCCTG
GCGGCTGAACGAggtgggacgggagggtTGCCAGGGAGGGTCGATGAGGG
GGTGGGGTTCTTCCATGTGCGACGTGTCAGATTGAAGCGTTTGCAGGCAT
GGCCGGAATTTGTTATTCTCGTCTGCGCGGCTGCTCtgaccctccttctt
tcctccctctggctGCCAGCGACATTACGGCGCCCTGACAGGCCTCTCCA
AGAAAATGATTGCCCAGCGCCACGGAGAGGCCAAATTTAAACGCTGGCGA
CGCTCCTATGCCACAAGGCCACCCGAGGtatcttccttctcgtcccacTA
CCCCGGCAACGACGACCGATACGTGAAATACGCGGAAGACATGCGGGTCT
CGGTCCGGGAGACGCTGATTCGGTCCCTCTCCGACATGCGCGTGAAGATC
CACCGGAAGTTTCCCAAGGCGGAGAGCTTGAAAGACTGCATGAGCAGGAC
GATTCCTTTTTACACCGACCACATCGTACCGCAATCCGTCGCGAAGGGCA
AAACGGTCCTGATAGCTTCCTCGGAGAACGCGATCCGAGGCTTGTTCATG
CACCTGTGTGACATCCCCGCCGACCGCATCGCCGAGGTCGAGATTCCCAC
GGGCCTGCCGCTCGTCTACAACATTCGCAAGAGGTGCATCCAACTCCTAG
AGACGGGCTTTGAGAACCCACAAGATCCATTGGGGCACTTAAATTTCGGC
TCCTCGCCTGAGCTATTGTTCCAGCCTTGCGATGCCGAGCGGGACACGGA
GTGCTTTTTGGGCGCCGACGGGAAATCCTATAGGTACGATCCCCTGATCC
GActgggggaggcagagaggaggaatttggaggaggacatgatggcggaa
gcggaggaaaaggcctcgTCTAAGCCCTCCagcggccctccctctcctcc
atccacttCGTCTGctcccgccgctgctgcgtccgccaaggcggctgctg
ctgcccctCGGCCAACGGCGCCTGCTTCTGTGTAGAGGCTATGTTTGTGT
GAAGATGTAATGTATACACGTTGACAGTATAGTGCGATAAATGACAAAGA
ATCTCGTCATTTTTAGCAAGACTACCCTTCTCAGCGTGCGCGGAAAAGGT
TGCTTTCGCTTTAATTGCTTGTAATCT

Coding sequence (CDS) from alignment at CM002456.1:1011460..1014436+

>rna1035 ID=rna1035|Name=rna1035|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002456.1:1011460..1014436+ (Nannochloropsis gaditana)
ATGCTCACGATGCGCCGGCTATTGAACACTCAACCTCGCAAGACACTCTT
GCACAAGCTATTTTTTAGGGTTGCGATCTTCGGGGCCATCATTTCATTTA
GGCCCGCAAGCGCTTTCTTGTCCCCATTGGTCCCGAGATGTAGTTTTACA
TTCCGCCATGAAGTCTCATCCACTATAGTGTGCATGATGGCACCTCACCG
AGTACATGGTGTCGACAGTATGTGGAATTCGCTCCATCACGGAAGCAACA
CGACTTTCGTTTCCGAAATCGAGGACGACGTGTTTGCGGGATCAAACTCC
TGGGCCAAGAAGGTTTACAGAGCACTCAACGCCGCCACAAAGCGCAAGGA
ACCCGGCAAATTGATCATGATCCGCCACGGAGAGTCCATGCTGAATTACA
ACAAGACATTCACGGGTTGGATCGACGCGGACCTGAACGAACGGGGCATT
CGGGAGACGGAGCACTCGGCACGCTTGCTGATGGAGCGTGGCTACGAAAT
CGACGTCACCTACACCTCACGCCTAAAGCGCGCCATTCGATCGAGTTGGA
TCCTCATGACGGAGCTGGGGCAGATCTATCGGCCCGTGTACAAATCCTGG
CGCCTGAACGAGAGGATGTACGGAGCCCTCGAAGGCATGAGCAAGCCCGG
GCTGGccgaggagctgggggaggaagtggtccAGGCATTCCGCACGGGAC
TGACcacgacgcctcctcccatgaCGCCCGACCACCCCCACTGGCACATG
CACGAGAAGAAGTACGCGGACGTGAAGCCGGAGGAGATCCCCGTCACCGA
GTCCCTGCAGGACACCATGGAGCGGACCTTGCCCCTGTGGGAATCGCGCA
TCCTCCCAGACCTGCGATCGGGCCGCACCGTCATGATCGTGGCGCACGCG
AACTCGCTCCGGGGCATCGTCAAGCACATCGACAACCTGAACCAGACGGA
GATCCAGTCGGTGGCCATTCCCAACGGAATCCCCCTCGTCTACAAGTTCG
ACAAGAACATGGTGCCTATcgagcaagagggagcggtCTCGCCCCTGACG
GGAGAGTTCCTCGAGAAGAAAGGACTCCTGCGCGCTGCCCTTGCGAAAGA
GGCAGAGCTGGCCGCCTCCGTGCCTGGGTACTCCACCGACGGGGGTGGAT
TCCGAGGCAATGCCAACTTGCCCGTGATGGACGCACGCTTGCGGGGCCTG
GCCAAGCTCTCAGAAGCCCGGCAACTTATCGCAGCCACCAGTTTGGGAGT
CCCGCCCCCGcttgctccccttccccaggcTGTGCCAGCGACTCGCGTGG
CTTACCCTCGCCTGGTGGTCCCCAAAGCCGCGTCTTCGCCGCCGAGTGCC
GGGGCACCGGATGCGAAGAACGCGCAAGAGCATGACCAAATCATCGTCAT
CATGCGCCACGGGAAGACCGAGTACAACAAGCTCGGCGTGTTCACGGGCT
GGGAAGACGCCCCCTTGGCCAACGAGGGTCGGATCGAGGCGCGCAACGCG
GGGAAGCTCCTGAAGCGGCACGGCATCGAGCTCGACGTCGTCTACACCTC
CTGGCTCTCCCGGGCTATTGAGACGGCCTGGTTGATTGTGGACGAGCTGG
ACTGCCTCTGGGTGCCGATTGTCAAGTCCTGGCGGCTGAACGAggtggga
cgggagggtTGCCAGGGAGGGTCGATGAGGGGGTGGGGTTCTTCCATGTG
CGACGTGTCAGATTGA

Synonyms

Publications