rna1031, rna1031 (mRNA) Nannochloropsis gaditana

Overview
Namerna1031
Unique Namerna1031
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1936
Alignment locationCM002456.1:1001851..1002852 -

Link to JBrowse

Properties
Property NameValue
Producthistone h4
Orig transcript idgnl|cribi|Naga_100050g29.6843.mrna
Orig protein idgnl|cribi|Naga_100050g29.6843
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1001851..1002852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g29gene993Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29620.1cds1030Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1031rna1031-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1031 ID=rna1031|Name=rna1031|organism=Nannochloropsis gaditana|type=mRNA|length=1936bp
TTGCGTTTGAGCGGAGGATCCATTCATCTGGGGGGGGGGGGGAAGGGCAC
CACTCCAAAGGGGGAAGGCATGTCAGGCACGTTCCCTCACCCGCCCCGTC
GGCGCCGCGAGGCGTCAGGGGGACACCCGGGGGTGGTTTCGGTCGATGCG
TGCATTCTGTTGACAGTTGGGTGGGAGAGAAATGGGTCCCTTGAAGGGGC
TCGGGACGGGTGCCTACGGTTTGCTCGCCTCGGCGATCGCGGGCACGGCG
AGTGATTAACAAGCGCCGTCCACATGTTGAGATTGTCGACCTCACTCGTG
GCGAGGCGGCCACGGATTTGCCGCGGGAAGGGAGGAGGAGAAGGGATGGG
AGGTTGCAGCGGTGTGCGCGCGTCAGCTGAGCATGTCTGGTGCATGTCCC
CTTTTCCCCTCCCGACTGACATGAGACTATCCTTCTTGTTCTCTACGTCC
TCCCACAGCCGCAAGCTTCGGGCATGCGCAAGAAAGGTCAGACGAGGGGC
GAGGACGCGTCGGAGAACGACGAGGCGCAGGCGCTGGCCGAGATCATGAT
GCCGCGAAAGCACCGGCGGGCCTACCAAGTCGCCCGCCGGGGGGAGGCCA
AGCAGAAGGAGAAGGTGGAGGCACTGGTGACCAAGCGACGCAAGCTGGAA
GAGGCCGCGGGTGTGGCTGCTCCCCGTTATGCGACGAGCAAGCGAAGGGC
TGGGGCGAGGGGGACGACTGCGGTAGGAAAGGGTGGGAGGGGGGCGAAGA
CGGGGGCGCGGGTCTCCACCAGGTAGACGCGGAGCGACCCGACGCCGAGA
GCCCCACGTAGATGGGGAGTGGGCCGTGTTATGCGAGACTTCTCCGACTG
GGACGTTGTGAGAGAGGGGCTAGCAAAACCTTGACGAAGCTCCAAATAGA
AATTAAATAGTATTGCTCGTGCTTACGCGGAAGGCGGAATGGCGCGGACA
TACGAAATTTATATGCGCATTGGCACTCAGGGCAAGAAAATTAAAAAATA
AAAAGATCGCGTGTACGAGGCTTCACATGAAAGGGGGGACTGAAAAGTCC
CTTGAATTTGATTGGATGTGACTCGAGCATGTCAGCGCTCATGAACTTAA
GCTGATGCTTAACCACCGAAGCCGTACAGAGTGCGGCCCTGTCGCTTCAG
AGCGTACACGACATCAAGAGCCGTGACGGTCTTGCGGCGGGCGTGCTCAG
TGTAGGTGACGGAATCACGGATGACGTTCTCCAGGAAGACCTTGAGCACA
CCGCGGGTCTCCTCGTAGATGAGGCCCGAGATACGCTTGACACCACCTCG
GCGGGCCAAACGACGGATGGCGGGCTTGGTAATGCCCTGGATGTTGTCAC
GCAACACCTTGCGGTGGCGCTTAGCGCCGCCTTTGCCGAGGCCCTTGCCG
CCCTTGCCGCGTCCAGACATGATTTGAGAGTTTGGGTGTGTTGAACTGCC
AAGATAGGAATATAAGACAATGAATGAGATTTTCATTAGACAAGATGTGT
GAAGTCCCTCAAAAAGGATTTGAGACACCGTGCAAGAGCGATTGTGTGTA
TGCACGGGCGCATGAGTGCTTTTATGTCGTACGATATGGGAACACGAGAA
GTCGAGGGTTGGGCGGGAAGGGGGATGAGGGACTCACGAGACATATCGAC
CAGTGAGAACGACAGAAACGCACTTGCGATTTCTGATAGACAATTGATCT
ATCGAGGAAGAAAACTCTTTTTCTCTTTGTGGCCATGAGAAACAGTAGGA
TGCCTAAGATGGAAGCACAATCACGCAGACGCGGAGTGGAAAGGGCACGA
CGGACGTGACTTTTGATTTGGCGAGGGTGTGGGGGAGCAAAAGGAATAAA
ATGCACCAAGAACCGTTTAATTTCAAATACACATGAGTGACGCCATTCCT
AAAAACAACTAGACAGTCGTGTAGCCGCAAAAAACT
back to top

protein sequence of rna1031

>rna1031-protein ID=rna1031-protein|Name=rna1031|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MKISFIVLYSYLGSSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQ
GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR
RKTVTALDVVYALKRQGRTLYGFGG
back to top

mRNA from alignment at CM002456.1:1001851..1002852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1031 ID=rna1031|Name=rna1031|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp|location=Sequence derived from alignment at CM002456.1:1001851..1002852- (Nannochloropsis gaditana)
GCGTCTGCGTGATTGTGCTTCCATCTTAGGCATCCTACTGTTTCTCATGG
CCACAAAGAGAAAAAGAGTTTTCTTCCTCGATAGATCAATTGTCTATCAG
AAATCGCAAGTGCGTTTCTGTCGTTCTCACTGGTCGATATGTCTCGTGAG
TCCCTCATCCCCCTTCCCGCCCAACCCTCGACTTCTCGTGTTCCCATATC
GTACGACATAAAAGCACTCATGCGCCCGTGCATACACACAATCGCTCTTG
CACGGTGTCTCAAATCCTTTTTGAGGGACTTCACACATCTTGTCTAATGA
AAATCTCATTCATTGTCTTATATTCCTATCTTGGCAGTTCAACACACCCA
AACTCTCAAATCATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTCGGCAA
AGGCGGCGCTAAGCGCCACCGCAAGGTGTTGCGTGACAACATCCAGGGCA
TTACCAAGCCCGCCATCCGTCGTTTGGCCCGCCGAGGTGGTGTCAAGCGT
ATCTCGGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCT
GGAGAACGTCATCCGTGATTCCGTCACCTACACTGAGCACGCCCGCCGCA
AGACCGTCACGGCTCTTGATGTCGTGTACGCTCTGAAGCGACAGGGCCGC
ACTCTGTACGGCTTCGGTGGTTAAGCATCAGCTTAAGTTCATGAGCGCTG
ACATGCTCGAGTCACATCCAATCAAATTCAAGGGACTTTTCAGTCCCCCC
TTTCATGTGAAGCCTCGTACACGCGATCTTTTTATTTTTTAATTTTCTTG
CCCTGAGTGCCAATGCGCATATAAATTTCGTATGTCCGCGCCATTCCGCC
TTCCGCGTAAGCACGAGCAATACTATTTACTGCAGAGATGGGCACCTTGT
CAGATCGTTGTCTTCGCAGCCAACATAACACGACACACTTCAACGCCTCA
CTAGGTAACCTAAGTGAAAACAAACATCTTGAGTACTGTTCAAGCTGGTA
AC
back to top

Coding sequence (CDS) from alignment at CM002456.1:1001851..1002852-

>rna1031 ID=rna1031|Name=rna1031|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at CM002456.1:1001851..1002852- (Nannochloropsis gaditana)
ATGAAAATCTCATTCATTGTCTTATATTCCTATCTTGGCAGTTCAACACA
CCCAAACTCTCAAATCATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTCG
GCAAAGGCGGCGCTAAGCGCCACCGCAAGGTGTTGCGTGACAACATCCAG
GGCATTACCAAGCCCGCCATCCGTCGTTTGGCCCGCCGAGGTGGTGTCAA
GCGTATCTCGGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCT
TCCTGGAGAACGTCATCCGTGATTCCGTCACCTACACTGAGCACGCCCGC
CGCAAGACCGTCACGGCTCTTGATGTCGTGTACGCTCTGAAGCGACAGGG
CCGCACTCTGTACGGCTTCGGTGGTTAA
back to top
Synonyms
Publications