EWM29620.1, cds1030 (CDS) Nannochloropsis gaditana

Overview
NameEWM29620.1
Unique Namecds1030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1002179..1002556 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29620.1
Producthistone h4
Orig transcript idgnl|cribi|Naga_100050g29.6843.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1002179..1002556 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR019809Histone_H4_CS
IPR009072Histone-fold
IPR007125Histone_core_D
IPR001951Histone_H4
Homology
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|585112192|gb|EWM29620.1| (histone h4 [Nannochloropsis gaditana])

HSP 1 Score: 246.899 bits (629), Expect = 1.015e-82
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 MKISFIVLYSYLGSSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            MKISFIVLYSYLGSSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MKISFIVLYSYLGSSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|397636964|gb|EJK72475.1| (hypothetical protein THAOC_05990 [Thalassiosira oceanica])

HSP 1 Score: 203.756 bits (517), Expect = 9.735e-66
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0 
Query:   14 SSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            ++ + N  IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:    6 TARNRNQLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 117
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|1101595748|ref|XP_018963044.1| (PREDICTED: histone H4-like [Cyprinus carpio])

HSP 1 Score: 203.756 bits (517), Expect = 2.530e-65
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:   22 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   43 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 146
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|1207168263|ref|XP_021326436.1| (histone H4-like [Danio rerio])

HSP 1 Score: 201.445 bits (511), Expect = 7.091e-65
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:   22 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   14 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|585106200|gb|EWM24676.1| (histone h4 [Nannochloropsis gaditana])

HSP 1 Score: 200.675 bits (509), Expect = 9.445e-65
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|298712420|emb|CBJ33198.1| (histone H4 [Ectocarpus siliculosus])

HSP 1 Score: 200.675 bits (509), Expect = 1.039e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    4 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|301115051|ref|XP_002999295.1| (histone H4 [Phytophthora infestans T30-4] >gi|301116579|ref|XP_002906018.1| histone H4 [Phytophthora infestans T30-4] >gi|301117770|ref|XP_002906613.1| histone H4 [Phytophthora infestans T30-4] >gi|673019324|ref|XP_008863623.1| histone H4 [Aphanomyces invadans] >gi|673021864|ref|XP_008864893.1| histone H4 [Aphanomyces invadans] >gi|673029806|ref|XP_008868864.1| histone H4 [Aphanomyces invadans] >gi|673039681|ref|XP_008873801.1| histone H4 [Aphanomyces invadans] >gi|675167001|ref|XP_008892385.1| histone H4 [Phytophthora parasitica INRA-310] >gi|675189505|ref|XP_008903637.1| histone H4 [Phytophthora parasitica INRA-310] >gi|676378821|ref|XP_009032689.1| hypothetical protein AURANDRAFT_19438 [Aureococcus anophagefferens] >gi|676381833|ref|XP_009034195.1| hypothetical protein AURANDRAFT_59898 [Aureococcus anophagefferens] >gi|676382303|ref|XP_009034430.1| hypothetical protein AURANDRAFT_21960 [Aureococcus anophagefferens] >gi|676382613|ref|XP_009034585.1| hypothetical protein AURANDRAFT_59915 [Aureococcus anophagefferens] >gi|676385705|ref|XP_009036131.1| hypothetical protein AURANDRAFT_60044 [Aureococcus anophagefferens] >gi|676395753|ref|XP_009041154.1| hypothetical protein AURANDRAFT_60329 [Aureococcus anophagefferens] >gi|676396661|ref|XP_009041608.1| hypothetical protein AURANDRAFT_60352 [Aureococcus anophagefferens] >gi|676397607|ref|XP_009042081.1| hypothetical protein AURANDRAFT_60370 [Aureococcus anophagefferens] >gi|695375990|ref|XP_009515675.1| hypothetical protein PHYSODRAFT_284259 [Phytophthora sojae] >gi|695394750|ref|XP_009520978.1| hypothetical protein PHYSODRAFT_285108 [Phytophthora sojae] >gi|698785787|ref|XP_009825937.1| histone H4 [Aphanomyces astaci] >gi|698788186|ref|XP_009827125.1| histone H4 [Aphanomyces astaci] >gi|698803632|ref|XP_009834845.1| histone H4 [Aphanomyces astaci] >gi|698825697|ref|XP_009845877.1| histone H4 [Aphanomyces astaci] >gi|262107962|gb|EEY66014.1| histone H4 [Phytophthora infestans T30-4] >gi|262109318|gb|EEY67370.1| histone H4 [Phytophthora infestans T30-4] >gi|262111389|gb|EEY69441.1| histone H4 [Phytophthora infestans T30-4] >gi|298710646|emb|CBJ32073.1| histone H4 [Ectocarpus siliculosus] >gi|298710654|emb|CBJ32081.1| histone H4 [Ectocarpus siliculosus] >gi|298713698|emb|CBJ48889.1| histone H4 [Ectocarpus siliculosus] >gi|298713699|emb|CBJ48890.1| histone H4 [Ectocarpus siliculosus] >gi|299473058|emb|CBN77451.1| histone H4 [Ectocarpus siliculosus] >gi|299473063|emb|CBN77456.1| histone H4 [Ectocarpus siliculosus] >gi|299473066|emb|CBN77459.1| histone H4 [Ectocarpus siliculosus] >gi|323447300|gb|EGB03228.1| hypothetical protein AURANDRAFT_60370 [Aureococcus anophagefferens] >gi|323447769|gb|EGB03679.1| hypothetical protein AURANDRAFT_60352 [Aureococcus anophagefferens] >gi|323448267|gb|EGB04168.1| hypothetical protein AURANDRAFT_60329 [Aureococcus anophagefferens] >gi|323453130|gb|EGB09002.1| hypothetical protein AURANDRAFT_60044 [Aureococcus anophagefferens] >gi|323454716|gb|EGB10585.1| hypothetical protein AURANDRAFT_59898 [Aureococcus anophagefferens] >gi|323454982|gb|EGB10851.1| hypothetical protein AURANDRAFT_21960 [Aureococcus anophagefferens] >gi|323455157|gb|EGB11026.1| hypothetical protein AURANDRAFT_59915 [Aureococcus anophagefferens] >gi|323457222|gb|EGB13088.1| hypothetical protein AURANDRAFT_19438 [Aureococcus anophagefferens] >gi|348685875|gb|EGZ25690.1| hypothetical protein PHYSODRAFT_285108 [Phytophthora sojae] >gi|348688586|gb|EGZ28400.1| hypothetical protein PHYSODRAFT_284259 [Phytophthora sojae] >gi|566026128|gb|ETI49039.1| histone H4 [Phytophthora parasitica P1569] >gi|566026523|gb|ETI49434.1| histone H4 [Phytophthora parasitica P1569] >gi|567963408|gb|ETK88907.1| histone H4 [Phytophthora parasitica] >gi|567963819|gb|ETK89312.1| histone H4 [Phytophthora parasitica] >gi|567992106|gb|ETL42305.1| histone H4 [Phytophthora parasitica] >gi|567992576|gb|ETL42766.1| histone H4 [Phytophthora parasitica] >gi|568021389|gb|ETL95479.1| histone H4 [Phytophthora parasitica] >gi|568021832|gb|ETL95915.1| histone H4 [Phytophthora parasitica] >gi|568051779|gb|ETM48678.1| histone H4 [Phytophthora parasitica] >gi|568052197|gb|ETM49079.1| histone H4 [Phytophthora parasitica] >gi|568096404|gb|ETN11155.1| histone H4 [Phytophthora parasitica INRA-310] >gi|568108565|gb|ETN23189.1| histone H4 [Phytophthora parasitica INRA-310] >gi|570329829|gb|ETO77777.1| histone H4 [Phytophthora parasitica P1976] >gi|570330221|gb|ETO78169.1| histone H4 [Phytophthora parasitica P1976] >gi|570953549|gb|ETP18806.1| histone H4 [Phytophthora parasitica CJ01A1] >gi|570953950|gb|ETP19207.1| histone H4 [Phytophthora parasitica CJ01A1] >gi|570988260|gb|ETP46727.1| histone H4 [Phytophthora parasitica P10297] >gi|570988831|gb|ETP47136.1| histone H4 [Phytophthora parasitica P10297] >gi|574099000|gb|ETV64644.1| histone H4 [Aphanomyces astaci] >gi|574110214|gb|ETV75714.1| histone H4 [Aphanomyces astaci] >gi|574118214|gb|ETV83695.1| histone H4 [Aphanomyces astaci] >gi|574118765|gb|ETV84245.1| histone H4 [Aphanomyces astaci] >gi|574470582|gb|ETV97592.1| histone H4 [Aphanomyces invadans] >gi|574475259|gb|ETW02259.1| histone H4 [Aphanomyces invadans] >gi|574479824|gb|ETW06818.1| histone H4 [Aphanomyces invadans] >gi|574480537|gb|ETW07530.1| histone H4 [Aphanomyces invadans] >gi|635367176|emb|CCI44586.1| unnamed protein product [Albugo candida] >gi|635371604|emb|CCI40314.1| unnamed protein product [Albugo candida] >gi|953499224|emb|CEG39536.1| histone [Plasmopara halstedii] >gi|970628031|gb|KUF75792.1| Histone H4 [Phytophthora nicotianae] >gi|970630403|gb|KUF77363.1| Histone H4 [Phytophthora nicotianae] >gi|970661797|gb|KUF99234.1| hypothetical protein AM588_10011316 [Phytophthora nicotianae] >gi|970664205|gb|KUG01184.1| Histone H4 [Phytophthora nicotianae] >gi|1214707300|gb|OWZ18723.1| Histone H4.3 [Phytophthora megakarya] >gi|1214709934|gb|OWZ21070.1| Histone H4.3 [Phytophthora megakarya] >gi|1214713856|gb|OWZ24735.1| Histone H4 [Phytophthora megakarya])

HSP 1 Score: 199.904 bits (507), Expect = 1.635e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|1101541866|ref|XP_018936741.1| (PREDICTED: histone H4-like, partial [Cyprinus carpio])

HSP 1 Score: 200.675 bits (509), Expect = 1.957e-64
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:   22 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   23 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 126
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|909797418|ref|XP_005237432.2| (PREDICTED: histone H4-like [Falco peregrinus])

HSP 1 Score: 199.904 bits (507), Expect = 1.987e-64
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:   22 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    2 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 105
[Close]
BLAST of EWM29620.1 vs. NCBI_GenBank
Match: gi|585163312|ref|XP_006733830.1| (PREDICTED: histone H4-like isoform X2 [Leptonychotes weddellii])

HSP 1 Score: 200.29 bits (508), Expect = 2.311e-64
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:   22 IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
            +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   20 LMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 123
The following BLAST results are available for this feature:
BLAST of EWM29620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112192|gb|EWM29620.1|1.015e-82100.00histone h4 [Nannochloropsis gaditana][more]
gi|397636964|gb|EJK72475.1|9.735e-6691.96hypothetical protein THAOC_05990 [Thalassiosira oc... [more]
gi|1101595748|ref|XP_018963044.1|2.530e-6597.12PREDICTED: histone H4-like [Cyprinus carpio][more]
gi|1207168263|ref|XP_021326436.1|7.091e-6597.12histone H4-like [Danio rerio][more]
gi|585106200|gb|EWM24676.1|9.445e-65100.00histone h4 [Nannochloropsis gaditana][more]
gi|298712420|emb|CBJ33198.1|1.039e-6499.03histone H4 [Ectocarpus siliculosus][more]
gi|301115051|ref|XP_002999295.1|1.635e-6499.03histone H4 [Phytophthora infestans T30-4] >gi|3011... [more]
gi|1101541866|ref|XP_018936741.1|1.957e-6497.12PREDICTED: histone H4-like, partial [Cyprinus carp... [more]
gi|909797418|ref|XP_005237432.2|1.987e-6497.12PREDICTED: histone H4-like [Falco peregrinus][more]
gi|585163312|ref|XP_006733830.1|2.311e-6496.15PREDICTED: histone H4-like isoform X2 [Leptonychot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1031rna1031Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications