rna10296, rna10296 (mRNA) Nannochloropsis gaditana

Overview
Namerna10296
Unique Namerna10296
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1254
Alignment locationKK037270.1:21901..23063 +

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Properties
Property NameValue
Productvesicular acetylcholine transporter
Orig transcript idgnl|cribi|Naga_101237g1.2231.mrna
Orig protein idgnl|cribi|Naga_101237g1.2231
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:21901..23063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101237g1gene9997Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10296rna10296-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20408.1cds10265Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10296 ID=rna10296|Name=rna10296|organism=Nannochloropsis gaditana|type=mRNA|length=1254bp
CTCGGTCCACAACCGACCGGCGGCGGTGCGCGTCCTGCTGGAGGCGGGGC
GGATTTCCTGCACAGGAACGACGAGGGCAAGACCGCTCTAGACATGGCCA
GAGAACGCAACAACCCCGAGTGCGTCGCCCTCCTCGAGATGGCGGAGAAG
GCCTACCTGATGCGACGAGCCCGGCGCCTCCTCCGAGAGGGCGAGGCGTG
GGCCCATGTGCTTGAAGATACCTTAAGGGGCATGCCGAGGTGGCTGACGG
AGAGGGTACGGGGGGCGAAAGAGAGATGGCCCTACATGCAGCCCGAGCCC
GATCTGGACGAGGAGGTCGTCGAGACCGAGGACGGGAAGCAGGACCTGAA
GGAGGAGGGGGGGGGCACGGGGTGGGAGTCGGAAGCATGTGAGCTCAGGA
GCCCTCTATACTCCTTCTCCGATGCCTGCGAGGAGTTGGAGGAGGAGGAG
GAAGAGGAAGTGGGGGAGGGCGGGGACGGCCGGGAGGAGAAAGTGCTCTT
CGACTGCCCCTCCCTCTACTTCGCAGCCCCCCCCTCTACCTCCCCCTCTC
AGCCCTCCGTCCTACCTCCTTACTTCCACGCCTTTTCGACGGCTTTCGCA
TCCCCCTTTTGCCGACAAATGTCTACGACGACGCCGAGGAGGGAGGGGGA
AGAGGAGGAGGCTCAGGACAAGGCGAGGCAGGCTGCCTCCGTGGACAGCG
CCGTCGCTCATTACGTTAAAAGAAGAATGTCGTACGACGTGTTCCTGACG
CTCCAAGAGCTCGTCGTTTGAGAGGGTGTGAGAGGAGGGGTTAGAGGGCG
GTGGACGAGGAGCACGAAGGACAAGCTGTTGCAGACGGCGGAAATATTAT
GAATCCTTTCCCTGTCGTTTTCAGTCGGTGCGCTTAAGCCACCGATCAGC
CCCTTTGCGCAATATCTTTCCCGCATGCCATAGAAATAGAGCGAGTATAT
TTGGCAGGATTCAGTAGAATTGAAAGTTGTTGGCTACCTATCAAAACGAA
CATCAATAGAACTGGATGAGGAGTAATTTGACCTAAAAATATCCATATAG
TCGAATAAAGTGTTAGAAGGACATAGAGAGCGCATCATTGATCAAATCCA
AAAATATACATAAGTAGGAAGAAAAAAGGCCAATACGAGCGAGGAGCGTC
AGGTACCTGGAAGAGCCCAAAGAGATGCCACCTTCGATCGATTGACCGCT
CGTCAAATGAGCAATCAGCCAATTTAAATAAACACACAAGGATAAGGTCG
GAAG
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protein sequence of rna10296

>rna10296-protein ID=rna10296-protein|Name=rna10296|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLN
NISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRA
GRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGL
GLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAV
CFGVLAAGLGL
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mRNA from alignment at KK037270.1:21901..23063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10296 ID=rna10296|Name=rna10296|organism=Nannochloropsis gaditana|type=mRNA|length=1163bp|location=Sequence derived from alignment at KK037270.1:21901..23063+ (Nannochloropsis gaditana)
AACCCACATGCGCGTGGAGTGACGCAGGGCGAGTATGCGGCATGTTGAGC
CGAAGTGTACCGATCAGCCAAGATTTAATGTCTATTGTAATTCTTTCCTA
CATATCAAACAAGAAAATAAATCGCGGCCACGGAAGGCTTCTTAATTGCC
ACCATCGAGGGGCGGacgtgctggaggcggaggcccaAGAAGCGTCCAGA
AAAAATTGAGCAGCACAAGCTGTGCGCAGGCCGCAGTCTTCACTCAAAGT
GAGGACAAGGAACCAGGAAGGAGTCAAAGCTAGTCCAGGAAGAGTCTTgc
aaggtggaagggaaaaagtcTCAGGGGAAGGGGTTAGGACTTTCCATCCT
TACTGACGTCGCAGTCCCTTGCCAGGGAGGCGAGTGCACAGACCGCGATC
TCTGTGCCGGCGGCGCGCACCCCACGAATTACGGCTCGGTAGATCTGTAC
ATCACGCCTACCACTGCCTCGACAGCGTacacctccagctcctcgtcctc
cccggccggctcgtccccctccctgtggtCCATGCTATcaggcgcctccc
cctccaacgACACgcgcgcccccctcctcgggcctccctctccccctccc
gcccctccagaCGTACCATCTCCCGTCCAGAAACccctcgatctcctccg
cACCCTGGTCTTTGCCACCAATGTCCTCAACAACATCTCCCTGGGCTGCA
ccgcgcccttcctccagcaccacctcgAGGTCCACTACGAACAGTCGTAC
CAGTCCGCCGGCCTCGTCTTTGCCATCTTTcccctcgtcgccctcctctg
ctccccGCTCGGCGCTTTCCTCTGTCGCGCAGGCCGCGACAAGTACCTGG
TCTGGCAGTCCGGTCTCCTGGtcagcctcctcgccgccatcGGCTTCGGC
CTCGCGCGCTCcgtgcccgtcttcctcctcatgcggGGACTGCAGGGACT
GGGCTTcgccctctccaccatcgccgGCCTGGGCCTCCTGATCGAGCGGA
CCCCGGATCTGACGGCGGACATCGCGCGGCaggaggtgctggtgggCGTC
TCCATGGTGGTGGCCCCGGCTCTGGGCGGGTTCCTGTACTCCCTGGCGGG
TTTCGCCGCcgtcttcgtcgtcctcgcggTCTGCTTCGGTGTCCTTGCGG
CGGGGCTGGGGCT
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Coding sequence (CDS) from alignment at KK037270.1:21901..23063+

>rna10296 ID=rna10296|Name=rna10296|organism=Nannochloropsis gaditana|type=CDS|length=632bp|location=Sequence derived from alignment at KK037270.1:21901..23063+ (Nannochloropsis gaditana)
ATGCTATcaggcgcctccccctccaacgACACgcgcgcccccctcctcgg
gcctccctctccccctcccgcccctccagaCGTACCATCTCCCGTCCAGA
AACccctcgatctcctccgcACCCTGGTCTTTGCCACCAATGTCCTCAAC
AACATCTCCCTGGGCTGCAccgcgcccttcctccagcaccacctcgAGGT
CCACTACGAACAGTCGTACCAGTCCGCCGGCCTCGTCTTTGCCATCTTTc
ccctcgtcgccctcctctgctccccGCTCGGCGCTTTCCTCTGTCGCGCA
GGCCGCGACAAGTACCTGGTCTGGCAGTCCGGTCTCCTGGtcagcctcct
cgccgccatcGGCTTCGGCCTCGCGCGCTCcgtgcccgtcttcctcctca
tgcggGGACTGCAGGGACTGGGCTTcgccctctccaccatcgccgGCCTG
GGCCTCCTGATCGAGCGGACCCCGGATCTGACGGCGGACATCGCGCGGCa
ggaggtgctggtgggCGTCTCCATGGTGGTGGCCCCGGCTCTGGGCGGGT
TCCTGTACTCCCTGGCGGGTTTCGCCGCcgtcttcgtcgtcctcgcggTC
TGCTTCGGTGTCCTTGCGGCGGGGCTGGGGCT
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Synonyms
Publications