EWM20408.1, cds10265 (CDS) Nannochloropsis gaditana

Overview
NameEWM20408.1
Unique Namecds10265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037270.1:22432..23063 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20408.1
Productvesicular acetylcholine transporter
Partialtrue
Orig transcript idgnl|cribi|Naga_101237g1.2231.mrna
GbkeyCDS
End range.
End range23063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:22432..23063 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585099992|gb|EWM20408.1| (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 409.838 bits (1052), Expect = 1.960e-144
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
            MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL
Sbjct:    1 MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585105539|gb|EWM24167.1| (sugar transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 85.1149 bits (209), Expect = 1.133e-15
Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   17 GPPSPPPA--PPDVPSPVQ--------------KPLDL----LRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRA-GRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
            GPP+ P A  P D  SP                +PL L    LR L F       +++   +PF Q   +          GL F++  L ++L +PL A LC+A GR + L    G +++LLA +GF L+R+ P  L  R  QGL   L  +A + LLI   PD+  ++  QE+++ V++++AP LGG  Y +      ++ L+
Sbjct:  225 GPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFL--GYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALS 426          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.707 bits (169), Expect = 1.922e-10
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   38 LLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVF 195
            +LR  +      ++  + C  P+   +++  +  S    GL+F+I  +V  L  PL   L RA   + +    GL+V    A+ FG+  S+P F++ R LQG+G     ++GL LL+  + DL  DI   E   GV  ++ P +GGFL +  GF A+F
Sbjct:   96 MLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|1133415803|ref|XP_019880764.1| (PREDICTED: LOW QUALITY PROTEIN: synaptic vesicular amine transporter-like [Aethina tumida])

HSP 1 Score: 69.707 bits (169), Expect = 2.184e-10
Identity = 56/195 (28.72%), Postives = 91/195 (46.67%), Query Frame = 0
Query:   26 PDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSP-LGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
            P   +P  K +D++     A   L+  +L    P +      H +  Q     G++FA    V LL +P +G    + G    +   +G L+  L+ I F   RS  V  L R LQG+G + S+++G+G+L ER PD   D  R   +      + + +++ P  GG +Y   G +A F++L+     LA G GL
Sbjct:   76 PVTVNPCDKSIDIMDNYTTAATSLDYSNLTTLDPEIAKKEAKHKDLVQETVEVGIMFASKAFVQLLANPFVGPLTHKIGYSVPMF--AGFLIMFLSTIIFAFGRSYSVLFLARALQGIGSSCSSVSGMGMLAERYPD---DKERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLILS----ALALGDGL 261          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.707 bits (169), Expect = 2.559e-10
Identity = 43/158 (27.22%), Postives = 79/158 (50.00%), Query Frame = 0
Query:   42 LVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCS-PLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVL 198
            +V  T ++  I      PF   H + +        G++F+++PL   L S  +G    R GR    V+ SGL++     +GFG    +   ++MR +QG+G     +AG+ LL++ + ++  D+   +  +G+  ++ P LG  LY+  GF  + +VL
Sbjct:   90 MVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGR--AFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVL 245          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 68.5514 bits (166), Expect = 2.603e-10
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0
Query:   38 LLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
            +LR  +      ++  + C  P+   +++  +  S    GL+F+I  +V  L  PL   L RA   + +    GL+V    A+ FG+  S+P F++ R LQG+G     ++GL LL+  + DL  DI   E   GV  ++ P +GGFL +  GF A+F ++ 
Sbjct:   96 MLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMT 256          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585101952|gb|EWM21678.1| (Major facilitator superfamily domain protein [Nannochloropsis gaditana])

HSP 1 Score: 68.9366 bits (167), Expect = 2.909e-10
Identity = 52/192 (27.08%), Postives = 85/192 (44.27%), Query Frame = 0
Query:   18 PPSPPPAPPDV------PSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIG----FGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
            PP  PP P         P P       LR  +  +   + +  GC  PF   +++ +++ +    G +F++  LV  L  PL A +        +     L +++L  IG    FGL+     FL  R LQG+G  +  +AGL LL+  +PD+  DI   E    +  +  P LGG ++   G   +F++L 
Sbjct:   20 PPQLPPTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHI-----SHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLT 206          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|157119801|ref|XP_001659513.1| (AAEL008816-PA, partial [Aedes aegypti] >gi|108875166|gb|EAT39391.1| AAEL008816-PA, partial [Aedes aegypti])

HSP 1 Score: 68.5514 bits (166), Expect = 5.604e-10
Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 0
Query:   10 DTRAPLLGPPSPPPAPPDVPSPVQKP-------LDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSPL-GAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
            D R P     S P  PP   SP +K        +D+   +V  +N++ N  +   A +     E H E  +     GL+FA    V LL +P+ G    + G    +   +G ++  ++ + F   R+ PV  L R LQG+G + S+++G+G+L +R  D   D  R   +      + + +++ P  GG +Y   G +A F+VL+     LA G GL
Sbjct:    9 DIRHPDAPLASFPKTPPTTLSPCEKETTTPYNGIDITTPVV--SNIIQN-HITDNASWHAEREERHKELVEETVEVGLMFASKAFVQLLANPIVGPLTHKIGYSIPMF--TGFVIMFISTLIFAFGRTYPVLFLARALQGIGSSCSSVSGMGMLADRYTD---DKERGNAMGIALGGLALGVLIGPPFGGIMYEFVGKSAPFLVLS----ALALGDGL 214          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|972198634|ref|XP_015181296.1| (PREDICTED: synaptic vesicular amine transporter [Polistes dominula] >gi|972198636|ref|XP_015181297.1| PREDICTED: synaptic vesicular amine transporter [Polistes dominula] >gi|972198638|ref|XP_015181298.1| PREDICTED: synaptic vesicular amine transporter [Polistes dominula])

HSP 1 Score: 67.0106 bits (162), Expect = 1.682e-9
Identity = 52/203 (25.62%), Postives = 96/203 (47.29%), Query Frame = 0
Query:   18 PPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSPL-GAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
            PP+P  + P   +     L+ L     +  + ++ ++  T   L+   + H E  +   + G++FA    V LL +P+ G    R G    +   +G ++  ++ + F   RS  +  + R LQG+G + S+++G+G+L ER  D   D  R   +      + + +++ P  GG +Y   G +A F+VL+     LA G GL
Sbjct:   84 PPTPRCSCPCNNTSNNSQLEFLSGTTMSAELTDSTTINATMAELEQKEQRHKELLEETVAVGMMFASKAFVQLLANPVVGPLTHRIGYSIPMF--TGFIIMFISTLIFAFGRSYGILFMARALQGIGSSCSSVSGMGMLAERYQD---DKERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLVLS----ALALGDGL 277          
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|673033746|ref|XP_008870834.1| (hypothetical protein H310_07257 [Aphanomyces invadans] >gi|574473696|gb|ETW00699.1| hypothetical protein H310_07257 [Aphanomyces invadans])

HSP 1 Score: 66.2402 bits (160), Expect = 2.999e-9
Identity = 55/192 (28.65%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   24 APPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLE--------VHYEQSYQSAGL----VFAIFPLVALLCSPLGAFLC-RAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDL-TADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVC 201
            A  D    + +P + LR   + + V+   S+G    FL + L         ++ +QS  ++ L    +F+I+P+  ++  P G++L  R GR+  +    GL VS L+ I F    SV + +++RG+QGLG  +S +  + ++ E+   L T  I+  E++V V+ V APA+G  L    G +  F+   +C
Sbjct:   23 AAHDKLMQLSQPWNPLRRPTWQSAVVT--SVGAFIVFLANQLTTLLVGFYPLYAKQSLGASELQISALFSIYPICIMVACPAGSYLTTRLGRNAVIC--LGLFVSGLSTIWFAYCTSVNILVVLRGIQGLGAGMSIVGSVSMITEQATMLVTTAISITELVVAVAFVTAPAIGSILVEWGGVSLPFLASGLC 210          
The following BLAST results are available for this feature:
BLAST of EWM20408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585099992|gb|EWM20408.1|1.960e-144100.00vesicular acetylcholine transporter, partial [Nann... [more]
gi|585105539|gb|EWM24167.1|1.133e-1531.37sugar transporter, partial [Nannochloropsis gadita... [more]
gi|553177040|ref|XP_005852431.1|1.922e-1031.65major facilitator superfamily mfs 1, partial [Nann... [more]
gi|1133415803|ref|XP_019880764.1|2.184e-1028.72PREDICTED: LOW QUALITY PROTEIN: synaptic vesicular... [more]
gi|553183476|ref|XP_005853905.1|2.559e-1027.22permease (major facilitator superfamily) [Nannochl... [more]
gi|585099635|gb|EWM20208.1|2.603e-1030.86major facilitator superfamily mfs_1 [Nannochlorops... [more]
gi|585101952|gb|EWM21678.1|2.909e-1027.08Major facilitator superfamily domain protein [Nann... [more]
gi|157119801|ref|XP_001659513.1|5.604e-1027.98AAEL008816-PA, partial [Aedes aegypti] >gi|1088751... [more]
gi|972198634|ref|XP_015181296.1|1.682e-925.62PREDICTED: synaptic vesicular amine transporter [P... [more]
gi|673033746|ref|XP_008870834.1|2.999e-928.65hypothetical protein H310_07257 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10296rna10296Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications