EWM20408.1, cds10265 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585099992|gb|EWM20408.1| (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 409.838 bits (1052), Expect = 1.960e-144 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL
Sbjct: 1 MLSGASPSNDTRAPLLGPPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585105539|gb|EWM24167.1| (sugar transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 85.1149 bits (209), Expect = 1.133e-15 Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 17 GPPSPPPA--PPDVPSPVQ--------------KPLDL----LRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRA-GRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
GPP+ P A P D SP +PL L LR L F +++ +PF Q + GL F++ L ++L +PL A LC+A GR + L G +++LLA +GF L+R+ P L R QGL L +A + LLI PD+ ++ QE+++ V++++AP LGG Y + ++ L+
Sbjct: 225 GPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFL--GYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALS 426
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 69.707 bits (169), Expect = 1.922e-10 Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 0
Query: 38 LLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVF 195
+LR + ++ + C P+ +++ + S GL+F+I +V L PL L RA + + GL+V A+ FG+ S+P F++ R LQG+G ++GL LL+ + DL DI E GV ++ P +GGFL + GF A+F
Sbjct: 96 MLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALF 252
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|1133415803|ref|XP_019880764.1| (PREDICTED: LOW QUALITY PROTEIN: synaptic vesicular amine transporter-like [Aethina tumida]) HSP 1 Score: 69.707 bits (169), Expect = 2.184e-10 Identity = 56/195 (28.72%), Postives = 91/195 (46.67%), Query Frame = 0
Query: 26 PDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSP-LGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
P +P K +D++ A L+ +L P + H + Q G++FA V LL +P +G + G + +G L+ L+ I F RS V L R LQG+G + S+++G+G+L ER PD D R + + + +++ P GG +Y G +A F++L+ LA G GL
Sbjct: 76 PVTVNPCDKSIDIMDNYTTAATSLDYSNLTTLDPEIAKKEAKHKDLVQETVEVGIMFASKAFVQLLANPFVGPLTHKIGYSVPMF--AGFLIMFLSTIIFAFGRSYSVLFLARALQGIGSSCSSVSGMGMLAERYPD---DKERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLILS----ALALGDGL 261
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 69.707 bits (169), Expect = 2.559e-10 Identity = 43/158 (27.22%), Postives = 79/158 (50.00%), Query Frame = 0
Query: 42 LVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCS-PLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVL 198
+V T ++ I PF H + + G++F+++PL L S +G R GR V+ SGL++ +GFG + ++MR +QG+G +AG+ LL++ + ++ D+ + +G+ ++ P LG LY+ GF + +VL
Sbjct: 90 MVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGR--AFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVL 245
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 68.5514 bits (166), Expect = 2.603e-10 Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0
Query: 38 LLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
+LR + ++ + C P+ +++ + S GL+F+I +V L PL L RA + + GL+V A+ FG+ S+P F++ R LQG+G ++GL LL+ + DL DI E GV ++ P +GGFL + GF A+F ++
Sbjct: 96 MLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMT 256
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|585101952|gb|EWM21678.1| (Major facilitator superfamily domain protein [Nannochloropsis gaditana]) HSP 1 Score: 68.9366 bits (167), Expect = 2.909e-10 Identity = 52/192 (27.08%), Postives = 85/192 (44.27%), Query Frame = 0
Query: 18 PPSPPPAPPDV------PSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIG----FGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLA 199
PP PP P P P LR + + + + GC PF +++ +++ + G +F++ LV L PL A + + L +++L IG FGL+ FL R LQG+G + +AGL LL+ +PD+ DI E + + P LGG ++ G +F++L
Sbjct: 20 PPQLPPTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHI-----SHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLT 206
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|157119801|ref|XP_001659513.1| (AAEL008816-PA, partial [Aedes aegypti] >gi|108875166|gb|EAT39391.1| AAEL008816-PA, partial [Aedes aegypti]) HSP 1 Score: 68.5514 bits (166), Expect = 5.604e-10 Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 0
Query: 10 DTRAPLLGPPSPPPAPPDVPSPVQKP-------LDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSPL-GAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
D R P S P PP SP +K +D+ +V +N++ N + A + E H E + GL+FA V LL +P+ G + G + +G ++ ++ + F R+ PV L R LQG+G + S+++G+G+L +R D D R + + + +++ P GG +Y G +A F+VL+ LA G GL
Sbjct: 9 DIRHPDAPLASFPKTPPTTLSPCEKETTTPYNGIDITTPVV--SNIIQN-HITDNASWHAEREERHKELVEETVEVGLMFASKAFVQLLANPIVGPLTHKIGYSIPMF--TGFVIMFISTLIFAFGRTYPVLFLARALQGIGSSCSSVSGMGMLADRYTD---DKERGNAMGIALGGLALGVLIGPPFGGIMYEFVGKSAPFLVLS----ALALGDGL 214
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|972198634|ref|XP_015181296.1| (PREDICTED: synaptic vesicular amine transporter [Polistes dominula] >gi|972198636|ref|XP_015181297.1| PREDICTED: synaptic vesicular amine transporter [Polistes dominula] >gi|972198638|ref|XP_015181298.1| PREDICTED: synaptic vesicular amine transporter [Polistes dominula]) HSP 1 Score: 67.0106 bits (162), Expect = 1.682e-9 Identity = 52/203 (25.62%), Postives = 96/203 (47.29%), Query Frame = 0
Query: 18 PPSPPPAPPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLEVHYE--QSYQSAGLVFAIFPLVALLCSPL-GAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVL------VGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGLGL 211
PP+P + P + L+ L + + ++ ++ T L+ + H E + + G++FA V LL +P+ G R G + +G ++ ++ + F RS + + R LQG+G + S+++G+G+L ER D D R + + + +++ P GG +Y G +A F+VL+ LA G GL
Sbjct: 84 PPTPRCSCPCNNTSNNSQLEFLSGTTMSAELTDSTTINATMAELEQKEQRHKELLEETVAVGMMFASKAFVQLLANPVVGPLTHRIGYSIPMF--TGFIIMFISTLIFAFGRSYGILFMARALQGIGSSCSSVSGMGMLAERYQD---DKERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLVLS----ALALGDGL 277
BLAST of EWM20408.1 vs. NCBI_GenBank
Match: gi|673033746|ref|XP_008870834.1| (hypothetical protein H310_07257 [Aphanomyces invadans] >gi|574473696|gb|ETW00699.1| hypothetical protein H310_07257 [Aphanomyces invadans]) HSP 1 Score: 66.2402 bits (160), Expect = 2.999e-9 Identity = 55/192 (28.65%), Postives = 98/192 (51.04%), Query Frame = 0
Query: 24 APPDVPSPVQKPLDLLRTLVFATNVLNNISLGCTAPFLQHHLE--------VHYEQSYQSAGL----VFAIFPLVALLCSPLGAFLC-RAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDL-TADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVC 201
A D + +P + LR + + V+ S+G FL + L ++ +QS ++ L +F+I+P+ ++ P G++L R GR+ + GL VS L+ I F SV + +++RG+QGLG +S + + ++ E+ L T I+ E++V V+ V APA+G L G + F+ +C
Sbjct: 23 AAHDKLMQLSQPWNPLRRPTWQSAVVT--SVGAFIVFLANQLTTLLVGFYPLYAKQSLGASELQISALFSIYPICIMVACPAGSYLTTRLGRNAVIC--LGLFVSGLSTIWFAYCTSVNILVVLRGIQGLGAGMSIVGSVSMITEQATMLVTTAISITELVVAVAFVTAPAIGSILVEWGGVSLPFLASGLC 210 The following BLAST results are available for this feature:
BLAST of EWM20408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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