rna10290, rna10290 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10290
Unique Name	rna10290
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2234
Alignment location	KK037270.1:10503..12018 +

Link to JBrowse

Properties


Property Name	Value
Product	gtpase
Orig transcript id	gnl\|cribi\|Naga_100502g1.8984.mrna
Orig protein id	gnl\|cribi\|Naga_100502g1.8984
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037270.1	supercontig	KK037270.1:10503..12018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100502g1	gene9991	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10290	rna10290-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20415.1	cds10259	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037270.1:10503..12018+
coding sequence from alignment at KK037270.1:10503..12018+

mRNA sequence

>rna10290 ID=rna10290|Name=rna10290|organism=Nannochloropsis gaditana|type=mRNA|length=2234bp
TAACCCAAGCAACCAAGAGCGCGATACCTGTATAGAGGTCAAAGAAAGCT
ACCGAATCCCTGTGAGTGAGTTATTGAAAGGTAATGATGCCTCATAAGAT
GGAATGTTAGAAAAACATCATCACCGGAGAGCGGCTGGTGGAATTCTCAC
CCCGAAGAGCCCGTGGGACAGGAGTTCCAGCCTTACCCAAATAGAGAGAT
GTTAATCCCCTGAATGTGATCATTCAGGAGCGTGCATCATCGAATCCTCT
GGGTAAATCTGTGTTAGGCTGTGCTCCAGGGTGCCCAATGTATGGCAGTC
TAATCAGGATATTACCCAAATGAGGTGGACTCTCCCTCCGGTGCCACGAC
GGCTTCCCATCGCAAGTGCGGTCAATACAAGTTGTTGCGTGCCTTTGAAA
GGAAAAATTCGTCGTGACTTAAGAGTCCCTGGGCCATTCTCCCTTCCTAT
TCATTTCTCCAGTCTCGAATCCTTCAAAGTAGAGAAAGGCATCGGGAACG
AGGTCATGGCCTCGGGAGCGCCAGACGGGCACGACGAGGTGCCGCTCTCC
ATCGCCATGCGAAAGGCCACACGCAAAATTCATCGCGAAAGTGATGCTTT
GGTAAATTTCAAACTCGTGTACGCTTTCACATACCCATCCCTCTACGCCG
ATGCCATCGGACTCTTCTACCCCATCTACCGAAAACTCGAGTCGCTTGTC
ATGTCCTCCGGCTCTCCTTCCCTTCAGCCCTTCGCCACCCTCCTCCGCCA
GTACAAGCTTGAACGCACCCGCGCCTTTGAGTCTGACATGGACTTTCATT
CCCGGGGGGGAACGGAGAAGGAAGACGACGAAATCCCCGAGGCAGTGAAG
AGCTACCTCGAACGGTTGGAGTCGTGCGCGGCAACGGATCCAGAACTCCT
TGCCGTCTACGTCTACCACATGTATATGGCCCTTCTCAGCGGCGGGCAGA
TCCTGAGACGGCTGACCACACAATGCCTCCTCCCCAAGACCCCCGTGACC
AACAAGGATCCCGACGCTGGGCTTGCGCTTTATTCCTTCGAGGGAGGGAA
AACGCAGGAGATTAAGGAAGCGATTCGAGCAACCGTGGATAGGATGGAGA
AAACCGGCGTTGTTTTCAATTCCCAGCGTCGTCAAGCCTTCTTAGACGAG
AGCATACGCCTTTTCCACATGAACAATGAAGTGGTGCGTTCCTTTCGGCC
CAGTCGAAAAGGGCGCCGGAAACTAGTCGTCCTCGGTTGTCTCCTCCTGG
TTGCCGTAATACTCGTGGTCACCATGGTGGGCGGAGCTATGTCTTGTGCG
TTTCAGACCAAGTGAGGTTATTGCGCATCTGTATAAATCATTCCAGCGGG
CCAGACATGAGCATTAAATGCTGTGGTGTTAAAGGCGGAGTACAACCATG
CCTTGCTGATTCGTAGCGTTATGTGGAAAGGAGCTCTTAATTTGCAAAAG
AAAAGCAGGAAGCAAGTTGATATTTGCTACGACATGAAAGTCAGTAAAGC
AACGACTCGCTCTCTCCTACGGAGCAAAAAAGAGTTTTAACTTAACTTAT
TCACATTGGCTAGATCCACCAAAAAATGCTTCTTTCCCAGCACCAGAAAA
GAAATCAAGCCAACAAAGCAGAACAAAATTCCTTCAAAGGCGATAGGAGC
GAGTACGGCCTGAGGGTCTCGGCACAGGATCGACCAGCTCTTGCGTCCGA
CACAACTGACTCACGCAAAAACGTGGCACTTCGTGACTGAAAAATCCACC
TCCCGTCATTCCTTGCTTTGTATGCGGTGCAGGTCATGTCAGCACGACGA
AATCTCGCCTCGCCGTTATTTTTCCTCCTTTTTTCCCAGCTTCTCGTCCT
TCTACTCGAAGTACTCGACCTCCCCACCCAGACCTCTGCGTTTCACGTCC
CTACTACCTCTACCCGACTTGAACAACCTCGTCTTCTGCAGCGGCAGCAG
AGAGCCTTATCGTTCCTAAACATTAATACTCGGACGACCGTGTTGGAACG
TGCGCCCGTATGGCTAGCTGCGGCAGGAGGAGGGGAAGGAAGCAATGAGG
AGGAGGTCGACGCTCCTGGTCGAGAGAACGCAGACATGGTGTCACGCCGT
CGTCGAGCAGGAAAAGATTCGCAAGACCATGAAGCTAGAGCCTCACGGGC
AAATTACGTGCAAAAAGCGCTGTCCTTGGCTGCGTTTGGCTTGACGGTGG
GGTCGGCGCGAGCAGGGGCGTTGGAGGGGGGAAG

protein sequence of rna10290

>rna10290-protein ID=rna10290-protein|Name=rna10290|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRV
SMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSD
IFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPAS
LSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSK
RPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNS
RGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHG
SEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQ
E

mRNA from alignment at KK037270.1:10503..12018+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10290 ID=rna10290|Name=rna10290|organism=Nannochloropsis gaditana|type=mRNA|length=1516bp|location=Sequence derived from alignment at KK037270.1:10503..12018+ (Nannochloropsis gaditana)
ATGCAGCTTAGACAGGTAAAAATGCGATCACCTTTAGCATCCATCCTTCT
GGCCACAACAAGAAGGAAgcgcgcccgtcctccctcgagGTATCGACATA
TTGCACGTATCAGCCCGATAAGTGTGTCTTGTAAGCCGCTGTTAAGAGTA
TCTATGCTTTCTCACGTATTTTCTATACGACACAGACATTTTGCCCGTCG
TCCGTCCCCACCCACtggtccgcctcctccccctcgtccgcctcctcgtc
gcacACAGCAgcttctttccctcacccCAACCATATACACGCTATCAGAC
ATCTTTGAGGATCGTCCTACAAGCGATGCAGAGGCTCCTGTCGCTGCTCC
CGATTCGGactcaacctcctccctccttccctcctcctccctccgtacca
AGGCGAAAATCCTCTTCTCGGCGCCTGCTCTTTACCACTCACCGGCCTCG
CTGTCGTACGCTTTACCCCCTGTCACGTCTTCGAAGCACACCGAGGTGGC
CTGCCTTGGCCGATCCAACGTGGGCAAGTCCAGTTTGgtcgccgccctcc
tgggggggggcgccggccgagggaaagggccccTGGTGCGGACGAGtaag
cgacccggatgtacgcAGACGCTCAACCTCTACAGCCTCCAGGTGCCAgc
tctctcttttttctttatttctctctcctcccctttcctacGCTGCCCGT
TACCCTGCCTTacaccacccctcctctcaccGCGAGGCGaccttccaccc
tccttctgtccctccttccctccctccttcgctccctccttaattccctc
cttccctccctccttcccctcgtctcctaGGGCCATCCTTACTTCTACTT
GGTCGATCTGCCTGGCTACGGCTttgcgagggcgggggggaggcagcgcg
AGGCATGGTTGGAGGTGACGCTCTCCTACCTTAATTCCCGGGGCTTGGAC
GTGTTAAGGAGGACTTTGCTCCTCATCGATGCCCGGCATGGCGTAATGAA
GCATGACGAGGTGACCTTGTcctcaccccttccctcctttctgccttccc
tctccctcatgcACACTCGAatcttccctacctccctccctccctccctc
cctccctccctacctccctttctcctcccaggcGGCCATGGACCTGCTGG
ACGAGCACGCAGTGCCCTATCAGCTCGTTCTCACCAAAGTCGACGCCCTC
AAACacgggagcgagagggaagagacgCTCGCGCAGGTAGGAAACGtcct
ttcatccctcctctttgccttctttcctcctccttcttctctttgacTTC
CCTCTGCGGCATCTGTTTGagcgcccctcctctccccctccctcccttcc
tccctccctccttccttcccttccttcctccctccaggtccTCCGTCTCT
GCACGCAACAGCGCCACCTCGCCTGTTGGCCCATAGTTCACGTCACCAGC
AGCAGGACaggagaaggggtggaggccctCCGGGAGTGCCTGGCGAGCCT
CGTCTACCAGGAGTga

Coding sequence (CDS) from alignment at KK037270.1:10503..12018+

>rna10290 ID=rna10290|Name=rna10290|organism=Nannochloropsis gaditana|type=CDS|length=4224bp|location=Sequence derived from alignment at KK037270.1:10503..12018+ (Nannochloropsis gaditana)
ATGCAGCTTAGACAGGTAAAAATGCGATCACCTTTAGCATCCATCCTTCT
GGCCACAACAAGAAGGAAgcgcgcccgtcctccctcgagGTATCGACATA
TTGCACGTATCAGCCCGATAAGTGTGTCTTGTAAGCCGCTGTTAAGAGTA
TCTATGCTTTCTCACGTATTTTCTATACGACACAGACATTTTGCCCGTCG
TCCGTCCCCACCCACtggtccgcctcctccccctcgtccgcctcctcgtc
gcacACAGCAgcttctttccctcacccCAACCATATACACGCTATCAGAC
ATCTTTGAGGATCGTCCTACAAGCGATGCAGAGGCTCCTGTCGCTGCTCC
CGATTCGGactcaacctcctccctccttccctcctcctccctccgtacca
AGGCGAAAATCCTCTTCTCGGCGCCTGCTCTTTACCACTCACCGGCCTCG
CTGTCGTACGCTTTACCCCCTGTCACGTCTTCGAAGCACACCGAGGTGGC
CTGCCTTGGCCGATCCAACGTGGGCAAGTCCAGTTTGgtcgccgccctcc
tgggggggggcgccggccgagggaaagggccccTGGTGCGGACGAGtaag
cgacccggatgtacgcAGACGCTCAACCTCTACAGCCTCCAGGGCCATCC
TTACTTCTACTTGGTCGATCTGCCTGGCTACGGCTttgcgagggcggggg
ggaggcagcgcgAGGCATGGTTGGAGGTGACGCTCTCCTACCTTAATTCC
CGGGGCTTGGACGTGTTAAGGAGGACTTTGCTCCTCATCGATGCCCGGCA
TGGCGTAATGAAGCATGACGAGgcGGCCATGGACCTGCTGGACGAGCACG
CAGTGCCCTATCAGCTCGTTCTCACCAAAGTCGACGCCCTCAAACacggg
agcgagagggaagagacgCTCGCGCAGgtccTCCGTCTCTGCACGCAACA
GCGCCACCTCGCCTGTTGGCCCATAGTTCACGTCACCAGCAGCAGGACag
gagaaggggtggaggccctCCGGGAGTGCCTGGCGAGCCTCGTCTACCAG
GAGTgaATGCAGCTTAGACAGGTAAAAATGCGATCACCTTTAGCATCCAT
CCTTCTGGCCACAACAAGAAGGAAgcgcgcccgtcctccctcgagGTATC
GACATATTGCACGTATCAGCCCGATAAGTGTGTCTTGTAAGCCGCTGTTA
AGAGTATCTATGCTTTCTCACGTATTTTCTATACGACACAGACATTTTGC
CCGTCGTCCGTCCCCACCCACtggtccgcctcctccccctcgtccgcctc
ctcgtcgcacACAGCAgcttctttccctcacccCAACCATATACACGCTA
TCAGACATCTTTGAGGATCGTCCTACAAGCGATGCAGAGGCTCCTGTCGC
TGCTCCCGATTCGGactcaacctcctccctccttccctcctcctccctcc
gtaccaAGGCGAAAATCCTCTTCTCGGCGCCTGCTCTTTACCACTCACCG
GCCTCGCTGTCGTACGCTTTACCCCCTGTCACGTCTTCGAAGCACACCGA
GGTGGCCTGCCTTGGCCGATCCAACGTGGGCAAGTCCAGTTTGgtcgccg
ccctcctgggggggggcgccggccgagggaaagggccccTGGTGCGGACG
AGtaagcgacccggatgtacgcAGACGCTCAACCTCTACAGCCTCCAGGG
CCATCCTTACTTCTACTTGGTCGATCTGCCTGGCTACGGCTttgcgaggg
cgggggggaggcagcgcgAGGCATGGTTGGAGGTGACGCTCTCCTACCTT
AATTCCCGGGGCTTGGACGTGTTAAGGAGGACTTTGCTCCTCATCGATGC
CCGGCATGGCGTAATGAAGCATGACGAGgcGGCCATGGACCTGCTGGACG
AGCACGCAGTGCCCTATCAGCTCGTTCTCACCAAAGTCGACGCCCTCAAA
CacgggagcgagagggaagagacgCTCGCGCAGgtccTCCGTCTCTGCAC
GCAACAGCGCCACCTCGCCTGTTGGCCCATAGTTCACGTCACCAGCAGCA
GGACaggagaaggggtggaggccctCCGGGAGTGCCTGGCGAGCCTCGTC
TACCAGGAGTgaATGCAGCTTAGACAGGTAAAAATGCGATCACCTTTAGC
ATCCATCCTTCTGGCCACAACAAGAAGGAAgcgcgcccgtcctccctcga
gGTATCGACATATTGCACGTATCAGCCCGATAAGTGTGTCTTGTAAGCCG
CTGTTAAGAGTATCTATGCTTTCTCACGTATTTTCTATACGACACAGACA
TTTTGCCCGTCGTCCGTCCCCACCCACtggtccgcctcctccccctcgtc
cgcctcctcgtcgcacACAGCAgcttctttccctcacccCAACCATATAC
ACGCTATCAGACATCTTTGAGGATCGTCCTACAAGCGATGCAGAGGCTCC
TGTCGCTGCTCCCGATTCGGactcaacctcctccctccttccctcctcct
ccctccgtaccaAGGCGAAAATCCTCTTCTCGGCGCCTGCTCTTTACCAC
TCACCGGCCTCGCTGTCGTACGCTTTACCCCCTGTCACGTCTTCGAAGCA
CACCGAGGTGGCCTGCCTTGGCCGATCCAACGTGGGCAAGTCCAGTTTGg
tcgccgccctcctgggggggggcgccggccgagggaaagggccccTGGTG
CGGACGAGtaagcgacccggatgtacgcAGACGCTCAACCTCTACAGCCT
CCAGGGCCATCCTTACTTCTACTTGGTCGATCTGCCTGGCTACGGCTttg
cgagggcgggggggaggcagcgcgAGGCATGGTTGGAGGTGACGCTCTCC
TACCTTAATTCCCGGGGCTTGGACGTGTTAAGGAGGACTTTGCTCCTCAT
CGATGCCCGGCATGGCGTAATGAAGCATGACGAGgcGGCCATGGACCTGC
TGGACGAGCACGCAGTGCCCTATCAGCTCGTTCTCACCAAAGTCGACGCC
CTCAAACacgggagcgagagggaagagacgCTCGCGCAGgtccTCCGTCT
CTGCACGCAACAGCGCCACCTCGCCTGTTGGCCCATAGTTCACGTCACCA
GCAGCAGGACaggagaaggggtggaggccctCCGGGAGTGCCTGGCGAGC
CTCGTCTACCAGGAGTgaATGCAGCTTAGACAGGTAAAAATGCGATCACC
TTTAGCATCCATCCTTCTGGCCACAACAAGAAGGAAgcgcgcccgtcctc
cctcgagGTATCGACATATTGCACGTATCAGCCCGATAAGTGTGTCTTGT
AAGCCGCTGTTAAGAGTATCTATGCTTTCTCACGTATTTTCTATACGACA
CAGACATTTTGCCCGTCGTCCGTCCCCACCCACtggtccgcctcctcccc
ctcgtccgcctcctcgtcgcacACAGCAgcttctttccctcacccCAACC
ATATACACGCTATCAGACATCTTTGAGGATCGTCCTACAAGCGATGCAGA
GGCTCCTGTCGCTGCTCCCGATTCGGactcaacctcctccctccttccct
cctcctccctccgtaccaAGGCGAAAATCCTCTTCTCGGCGCCTGCTCTT
TACCACTCACCGGCCTCGCTGTCGTACGCTTTACCCCCTGTCACGTCTTC
GAAGCACACCGAGGTGGCCTGCCTTGGCCGATCCAACGTGGGCAAGTCCA
GTTTGgtcgccgccctcctgggggggggcgccggccgagggaaagggccc
cTGGTGCGGACGAGtaagcgacccggatgtacgcAGACGCTCAACCTCTA
CAGCCTCCAGGGCCATCCTTACTTCTACTTGGTCGATCTGCCTGGCTACG
GCTttgcgagggcgggggggaggcagcgcgAGGCATGGTTGGAGGTGACG
CTCTCCTACCTTAATTCCCGGGGCTTGGACGTGTTAAGGAGGACTTTGCT
CCTCATCGATGCCCGGCATGGCGTAATGAAGCATGACGAGgcGGCCATGG
ACCTGCTGGACGAGCACGCAGTGCCCTATCAGCTCGTTCTCACCAAAGTC
GACGCCCTCAAACacgggagcgagagggaagagacgCTCGCGCAGgtccT
CCGTCTCTGCACGCAACAGCGCCACCTCGCCTGTTGGCCCATAGTTCACG
TCACCAGCAGCAGGACaggagaaggggtggaggccctCCGGGAGTGCCTG
GCGAGCCTCGTCTACCAGGAGTga

Synonyms

Publications