EWM20415.1, cds10259 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|585100005|gb|EWM20415.1| (gtpase [Nannochloropsis gaditana]) HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query: 1 MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351
MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE
Sbjct: 1 MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1057419328|ref|WP_068765420.1| (MULTISPECIES: YihA family ribosome biogenesis GTP-binding protein [Rhodobacteraceae] >gi|1095153341|gb|AOZ70420.1| YihA family ribosome biogenesis GTP-binding protein [Rhodobacter sp. LPB0142]) HSP 1 Score: 156.762 bits (395), Expect = 1.256e-42 Identity = 95/214 (44.39%), Postives = 124/214 (57.94%), Query Frame = 0
Query: 134 KAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
+ ++LF+AP + LPP S E+ GRSNVGKSSL+ AL + L R S PG TQ +N ++ QG PY LVDLPGYGFA A + W E+ +YL+ R LRR +LIDARHGV K DE + LLD AV +Q+V+TKVD + +ERE+ +AQV +H A P + VTSS GEG+E LR +A+L
Sbjct: 18 RGRLLFAAPVEFLKGVVAMNGLPP---SDRVEICFAGRSNVGKSSLINAL------TNRKNLARASNTPGRTQEINFFTTQGGPY--LVDLPGYGFAEAPVNIVKKWQELLKAYLSGR--VNLRRAFVLIDARHGVKKVDEEILSLLDRSAVTFQVVMTKVDKISK-AEREKVIAQVKGALA--KHPAAHPEIVVTSSEKGEGIETLRAIIATL 215
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1131835168|emb|SIS60205.1| (GTP-binding protein [Rhodobacter aestuarii]) HSP 1 Score: 155.221 bits (391), Expect = 4.754e-42 Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P + R + ++LF+AP + LPP + EV GRSNVGKSSL+ AL + L R S PG TQ +N ++ Q PY LVDLPGYGFA A + W + +YL+ R LRR +LIDARHGV D ++LLD AV +Q+VLTKVD + +ERE+ + QV Q+H A +P + VTSS GEGVE LR +A+L
Sbjct: 12 PDDASRERGRLLFAAPVEFLKGVVAMSGLPP---ADRIEVCFAGRSNVGKSSLINALTN------RKNLARASNTPGRTQEINFFTTQDGPY--LVDLPGYGFAEAPVAVVKKWQALLKNYLSGRA--TLRRAFVLIDARHGVKPVDAEILELLDRSAVTFQVVLTKVDKISK-TEREKVIEQV--KGALQKHPAAYPEIVVTSSEKGEGVETLRAIIATL 216
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1134242493|ref|WP_076484026.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter aestuarii]) HSP 1 Score: 154.836 bits (390), Expect = 5.966e-42 Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P + R + ++LF+AP + LPP + EV GRSNVGKSSL+ AL + L R S PG TQ +N ++ Q PY LVDLPGYGFA A + W + +YL+ R LRR +LIDARHGV D ++LLD AV +Q+VLTKVD + +ERE+ + QV Q+H A +P + VTSS GEGVE LR +A+L
Sbjct: 11 PDDASRERGRLLFAAPVEFLKGVVAMSGLPP---ADRIEVCFAGRSNVGKSSLINALTN------RKNLARASNTPGRTQEINFFTTQDGPY--LVDLPGYGFAEAPVAVVKKWQALLKNYLSGRA--TLRRAFVLIDARHGVKPVDAEILELLDRSAVTFQVVLTKVDKISK-TEREKVIEQV--KGALQKHPAAYPEIVVTSSEKGEGVETLRAIIATL 215
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1188405886|ref|WP_085526751.1| (YihA family ribosome biogenesis GTP-binding protein [Maritimibacter sp. HL-12] >gi|1184398119|emb|SMH49707.1| GTP-binding protein [Maritimibacter sp. HL-12]) HSP 1 Score: 154.066 bits (388), Expect = 1.199e-41 Identity = 99/235 (42.13%), Postives = 128/235 (54.47%), Query Frame = 0
Query: 113 PVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P+ P++D+ P ++ R ++LF+AP + LPP EV GRSNVGKSSL+ AL G + L R S PG TQ +N ++ G PY LVDLPGYGFA A + E W + +YL R LRR +LIDARHGV DE M LLD AV +Q+VLTK D +K ER L QV +H A +P + VTSS G+G+E LR +A+L
Sbjct: 4 PLPFPEADT-----PDTTAREAGRLLFAAPTEFVKGVVAMDGLPP---DDRLEVCFAGRSNVGKSSLINALTG------RKGLARASNTPGRTQEINFFTTTGGPY--LVDLPGYGFANAPVKVVEKWQRLLKAYLAGRA--SLRRAFVLIDARHGVKAVDEEIMALLDRAAVTFQVVLTKADKIKT-DERARVLDQV--RAALAKHPAAYPELVVTSSEKGDGIETLRALIATL 217
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1101235748|gb|OIP82899.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacterales bacterium CG2_30_65_12]) HSP 1 Score: 152.525 bits (384), Expect = 4.411e-41 Identity = 101/235 (42.98%), Postives = 124/235 (52.77%), Query Frame = 0
Query: 113 PVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
PVAAP P R ++LF+AP + LPP EV GRSNVGKSSL+ AL G + L R S PG TQ +N ++ PY LVDLPGYGFA A + E W + +YL+ R LRR +LID+RHGV DE M LLD AV +Q VLTKVD +K S R LAQV +H A +P + VTSS G G+E LR +A+L
Sbjct: 4 PVAAP---------PDKDAREAGRLLFAAPTEFLKGVVALDGLPP---GDRVEVCFAGRSNVGKSSLINALTG------RKALARASNTPGRTQEINFFTTSNGPY--LVDLPGYGFANAPVKTVEKWQRLLKAYLSGRA--TLRRAFVLIDSRHGVKAVDEEIMALLDRSAVTFQAVLTKVDKVKEDS-RAAVLAQV--RGALAKHPAAFPEIIVTSSEKGWGIETLRALIAAL 213
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|565838999|ref|WP_023922441.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter capsulatus] >gi|564882767|gb|ETD84360.1| GTP-binding protein YsxC [Rhodobacter capsulatus B6]) HSP 1 Score: 152.525 bits (384), Expect = 4.478e-41 Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 0
Query: 127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P R + ++LF+A L+ LPP + EV GRSNVGKSSL+ AL G+ L R S PG TQ +N +S +G PY LVDLPGYGFA A + W + SYL+ R LRR +LIDARHGV DE + LLD AV +Q VLTK D + +E E + QV +H A +P + VTSS GEG+E LR +A+L
Sbjct: 11 PEQEARERGRLLFAAQVLFLKGVVAMAGLPP---ADRIEVCFAGRSNVGKSSLINAL------TGRKNLARASNTPGRTQEINFFSTEGGPY--LVDLPGYGFAEAPVAIVKKWQALLKSYLSGRA--TLRRAFVLIDARHGVKAVDEEILQLLDRSAVTFQAVLTKADKISK-AELERVIEQVKGALA--KHPAAYPEIVVTSSEKGEGIETLRAIIATL 215
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1056880365|ref|WP_068296190.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter sp. CCB-MM2]) HSP 1 Score: 152.14 bits (383), Expect = 6.126e-41 Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 0
Query: 138 LFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
LF+ P + LPP + E+ GRSNVGKSSL+ AL G+ L RTS PG TQ +N + + G Y+VDLPGYGFA A + W + +YL+ R LRR +LID RHG+ K DE +DLL++ AV +Q+VLTK D + + ++RE+TLAQV + + +H A +P + VTSS GEG+E LR +A++
Sbjct: 24 LFAGPVDFVKGVVAMSGLPP---ADRLEICLAGRSNVGKSSLINAL------TGRKSLARTSNTPGRTQEINYFDVGGQ--LYMVDLPGYGFAEAPVAVVKQWQALLKNYLSGR--STLRRAFVLIDMRHGIKKVDEEILDLLNKSAVTFQVVLTKADKI-NAAQREQTLAQVRKALS--KHPAAFPELLVTSSEKGEGIETLRALIATM 217
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|502831112|ref|WP_013066088.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter capsulatus] >gi|294474720|gb|ADE84108.1| GTP-binding protein EngB [Rhodobacter capsulatus SB 1003] >gi|564639824|gb|ETD03216.1| GTP-binding protein YsxC [Rhodobacter capsulatus DE442] >gi|564877722|gb|ETD79485.1| GTP-binding protein YsxC [Rhodobacter capsulatus R121] >gi|564884584|gb|ETD86112.1| GTP-binding protein YsxC [Rhodobacter capsulatus YW1] >gi|564888800|gb|ETD90148.1| GTP-binding protein YsxC [Rhodobacter capsulatus YW2] >gi|564974480|gb|ETE55275.1| GTP-binding protein YsxC [Rhodobacter capsulatus Y262]) HSP 1 Score: 151.754 bits (382), Expect = 1.073e-40 Identity = 94/221 (42.53%), Postives = 121/221 (54.75%), Query Frame = 0
Query: 127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P R + ++LF+A L+ LPP + EV GRSNVGKSSL+ AL G+ L R S PG TQ +N ++ +G PY LVDLPGYGFA A + W + SYL+ R LRR +LIDARHGV DE + LLD AV +Q VLTK D + +E E + QV +H A +P + VTSS GEG+E LR +A+L
Sbjct: 11 PEQEARERGRLLFAAQVLFLKGVVAMAGLPP---ADRIEVCFAGRSNVGKSSLINAL------TGRKNLARASNTPGRTQEINFFTTEGGPY--LVDLPGYGFAEAPVAIVKKWQALLKSYLSGRA--TLRRAFVLIDARHGVKAVDEEILQLLDRSAVTFQAVLTKADKISK-AELERVIEQVKGALA--KHPAAYPEIVVTSSEKGEGIETLRAIIATL 215
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|737778043|ref|WP_035745926.1| (YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis] >gi|672897938|gb|KFI27585.1| GTP-binding protein [Haematobacter missouriensis] >gi|1207780264|gb|OWJ76013.1| YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis] >gi|1207788096|gb|OWJ83415.1| YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis]) HSP 1 Score: 151.369 bits (381), Expect = 1.229e-40 Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
P + R + ++LF+ P + LPP + EV GRSNVGKSSL+ AL G+ L R S PG TQ +N ++ G + YLVDLPGYGFA A W + +YL+ R LRR +LIDARHG+ DE + LLD AV +Q+VLTKVD + G ERE+ LAQV + +H A +P + VTSS GEG+E LR +A+L
Sbjct: 12 PEDTARERGRLLFAGPVDFLKGVVAMDGLPP---ADRLEVCFAGRSNVGKSSLINAL------TGRKALARASNTPGRTQEINYFT-AGEDH-YLVDLPGYGFAEAPVATVRKWQALLKAYLSGRA--TLRRAFVLIDARHGIKAVDEEILTLLDRSAVTFQVVLTKVDKI-LGPEREKVLAQVRKALA--KHPAAYPEIIVTSSEKGEGIETLRAIIATL 216 The following BLAST results are available for this feature:
BLAST of EWM20415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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