EWM20415.1, cds10259 (CDS) Nannochloropsis gaditana

Overview
NameEWM20415.1
Unique Namecds10259
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037270.1:10503..11144 +
Alignment locationKK037270.1:11333..11512 +
Alignment locationKK037270.1:11634..11738 +
Alignment locationKK037270.1:11890..12018 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20415.1
Productgtpase
Orig transcript idgnl|cribi|Naga_100502g1.8984.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:10503..11144 +
KK037270.1supercontigKK037270.1:11333..11512 +
KK037270.1supercontigKK037270.1:11634..11738 +
KK037270.1supercontigKK037270.1:11890..12018 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0000917division septum assembly
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030393G_ENGB_dom
IPR019987GTP-bd_ribosome_bio_YsxC
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
Homology
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|585100005|gb|EWM20415.1| (gtpase [Nannochloropsis gaditana])

HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351
            MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE
Sbjct:    1 MQLRQVKMRSPLASILLATTRRKRARPPSRYRHIARISPISVSCKPLLRVSMLSHVFSIRHRHFARRPSPPTGPPPPPRPPPRRTQQLLSLTPTIYTLSDIFEDRPTSDAEAPVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASLVYQE 351          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1057419328|ref|WP_068765420.1| (MULTISPECIES: YihA family ribosome biogenesis GTP-binding protein [Rhodobacteraceae] >gi|1095153341|gb|AOZ70420.1| YihA family ribosome biogenesis GTP-binding protein [Rhodobacter sp. LPB0142])

HSP 1 Score: 156.762 bits (395), Expect = 1.256e-42
Identity = 95/214 (44.39%), Postives = 124/214 (57.94%), Query Frame = 0
Query:  134 KAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            + ++LF+AP  +         LPP   S   E+   GRSNVGKSSL+ AL        +  L R S  PG TQ +N ++ QG PY  LVDLPGYGFA A     + W E+  +YL+ R    LRR  +LIDARHGV K DE  + LLD  AV +Q+V+TKVD +   +ERE+ +AQV       +H A  P + VTSS  GEG+E LR  +A+L
Sbjct:   18 RGRLLFAAPVEFLKGVVAMNGLPP---SDRVEICFAGRSNVGKSSLINAL------TNRKNLARASNTPGRTQEINFFTTQGGPY--LVDLPGYGFAEAPVNIVKKWQELLKAYLSGR--VNLRRAFVLIDARHGVKKVDEEILSLLDRSAVTFQVVMTKVDKISK-AEREKVIAQVKGALA--KHPAAHPEIVVTSSEKGEGIETLRAIIATL 215          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1131835168|emb|SIS60205.1| (GTP-binding protein [Rhodobacter aestuarii])

HSP 1 Score: 155.221 bits (391), Expect = 4.754e-42
Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query:  127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P  + R + ++LF+AP  +         LPP   +   EV   GRSNVGKSSL+ AL        +  L R S  PG TQ +N ++ Q  PY  LVDLPGYGFA A     + W  +  +YL+ R    LRR  +LIDARHGV   D   ++LLD  AV +Q+VLTKVD +   +ERE+ + QV      Q+H A +P + VTSS  GEGVE LR  +A+L
Sbjct:   12 PDDASRERGRLLFAAPVEFLKGVVAMSGLPP---ADRIEVCFAGRSNVGKSSLINALTN------RKNLARASNTPGRTQEINFFTTQDGPY--LVDLPGYGFAEAPVAVVKKWQALLKNYLSGRA--TLRRAFVLIDARHGVKPVDAEILELLDRSAVTFQVVLTKVDKISK-TEREKVIEQV--KGALQKHPAAYPEIVVTSSEKGEGVETLRAIIATL 216          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1134242493|ref|WP_076484026.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter aestuarii])

HSP 1 Score: 154.836 bits (390), Expect = 5.966e-42
Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query:  127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P  + R + ++LF+AP  +         LPP   +   EV   GRSNVGKSSL+ AL        +  L R S  PG TQ +N ++ Q  PY  LVDLPGYGFA A     + W  +  +YL+ R    LRR  +LIDARHGV   D   ++LLD  AV +Q+VLTKVD +   +ERE+ + QV      Q+H A +P + VTSS  GEGVE LR  +A+L
Sbjct:   11 PDDASRERGRLLFAAPVEFLKGVVAMSGLPP---ADRIEVCFAGRSNVGKSSLINALTN------RKNLARASNTPGRTQEINFFTTQDGPY--LVDLPGYGFAEAPVAVVKKWQALLKNYLSGRA--TLRRAFVLIDARHGVKPVDAEILELLDRSAVTFQVVLTKVDKISK-TEREKVIEQV--KGALQKHPAAYPEIVVTSSEKGEGVETLRAIIATL 215          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1188405886|ref|WP_085526751.1| (YihA family ribosome biogenesis GTP-binding protein [Maritimibacter sp. HL-12] >gi|1184398119|emb|SMH49707.1| GTP-binding protein [Maritimibacter sp. HL-12])

HSP 1 Score: 154.066 bits (388), Expect = 1.199e-41
Identity = 99/235 (42.13%), Postives = 128/235 (54.47%), Query Frame = 0
Query:  113 PVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P+  P++D+     P ++ R   ++LF+AP  +         LPP       EV   GRSNVGKSSL+ AL G      +  L R S  PG TQ +N ++  G PY  LVDLPGYGFA A  +  E W  +  +YL  R    LRR  +LIDARHGV   DE  M LLD  AV +Q+VLTK D +K   ER   L QV       +H A +P + VTSS  G+G+E LR  +A+L
Sbjct:    4 PLPFPEADT-----PDTTAREAGRLLFAAPTEFVKGVVAMDGLPP---DDRLEVCFAGRSNVGKSSLINALTG------RKGLARASNTPGRTQEINFFTTTGGPY--LVDLPGYGFANAPVKVVEKWQRLLKAYLAGRA--SLRRAFVLIDARHGVKAVDEEIMALLDRAAVTFQVVLTKADKIKT-DERARVLDQV--RAALAKHPAAYPELVVTSSEKGDGIETLRALIATL 217          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1101235748|gb|OIP82899.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacterales bacterium CG2_30_65_12])

HSP 1 Score: 152.525 bits (384), Expect = 4.411e-41
Identity = 101/235 (42.98%), Postives = 124/235 (52.77%), Query Frame = 0
Query:  113 PVAAPDSDSTSSLLPSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            PVAAP         P    R   ++LF+AP  +         LPP       EV   GRSNVGKSSL+ AL G      +  L R S  PG TQ +N ++    PY  LVDLPGYGFA A  +  E W  +  +YL+ R    LRR  +LID+RHGV   DE  M LLD  AV +Q VLTKVD +K  S R   LAQV       +H A +P + VTSS  G G+E LR  +A+L
Sbjct:    4 PVAAP---------PDKDAREAGRLLFAAPTEFLKGVVALDGLPP---GDRVEVCFAGRSNVGKSSLINALTG------RKALARASNTPGRTQEINFFTTSNGPY--LVDLPGYGFANAPVKTVEKWQRLLKAYLSGRA--TLRRAFVLIDSRHGVKAVDEEIMALLDRSAVTFQAVLTKVDKVKEDS-RAAVLAQV--RGALAKHPAAFPEIIVTSSEKGWGIETLRALIAAL 213          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|565838999|ref|WP_023922441.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter capsulatus] >gi|564882767|gb|ETD84360.1| GTP-binding protein YsxC [Rhodobacter capsulatus B6])

HSP 1 Score: 152.525 bits (384), Expect = 4.478e-41
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 0
Query:  127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P    R + ++LF+A  L+         LPP   +   EV   GRSNVGKSSL+ AL       G+  L R S  PG TQ +N +S +G PY  LVDLPGYGFA A     + W  +  SYL+ R    LRR  +LIDARHGV   DE  + LLD  AV +Q VLTK D +   +E E  + QV       +H A +P + VTSS  GEG+E LR  +A+L
Sbjct:   11 PEQEARERGRLLFAAQVLFLKGVVAMAGLPP---ADRIEVCFAGRSNVGKSSLINAL------TGRKNLARASNTPGRTQEINFFSTEGGPY--LVDLPGYGFAEAPVAIVKKWQALLKSYLSGRA--TLRRAFVLIDARHGVKAVDEEILQLLDRSAVTFQAVLTKADKISK-AELERVIEQVKGALA--KHPAAYPEIVVTSSEKGEGIETLRAIIATL 215          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|1056880365|ref|WP_068296190.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter sp. CCB-MM2])

HSP 1 Score: 152.14 bits (383), Expect = 6.126e-41
Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 0
Query:  138 LFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            LF+ P  +         LPP   +   E+   GRSNVGKSSL+ AL       G+  L RTS  PG TQ +N + + G    Y+VDLPGYGFA A     + W  +  +YL+ R    LRR  +LID RHG+ K DE  +DLL++ AV +Q+VLTK D + + ++RE+TLAQV +  +  +H A +P + VTSS  GEG+E LR  +A++
Sbjct:   24 LFAGPVDFVKGVVAMSGLPP---ADRLEICLAGRSNVGKSSLINAL------TGRKSLARTSNTPGRTQEINYFDVGGQ--LYMVDLPGYGFAEAPVAVVKQWQALLKNYLSGR--STLRRAFVLIDMRHGIKKVDEEILDLLNKSAVTFQVVLTKADKI-NAAQREQTLAQVRKALS--KHPAAFPELLVTSSEKGEGIETLRALIATM 217          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|502831112|ref|WP_013066088.1| (YihA family ribosome biogenesis GTP-binding protein [Rhodobacter capsulatus] >gi|294474720|gb|ADE84108.1| GTP-binding protein EngB [Rhodobacter capsulatus SB 1003] >gi|564639824|gb|ETD03216.1| GTP-binding protein YsxC [Rhodobacter capsulatus DE442] >gi|564877722|gb|ETD79485.1| GTP-binding protein YsxC [Rhodobacter capsulatus R121] >gi|564884584|gb|ETD86112.1| GTP-binding protein YsxC [Rhodobacter capsulatus YW1] >gi|564888800|gb|ETD90148.1| GTP-binding protein YsxC [Rhodobacter capsulatus YW2] >gi|564974480|gb|ETE55275.1| GTP-binding protein YsxC [Rhodobacter capsulatus Y262])

HSP 1 Score: 151.754 bits (382), Expect = 1.073e-40
Identity = 94/221 (42.53%), Postives = 121/221 (54.75%), Query Frame = 0
Query:  127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P    R + ++LF+A  L+         LPP   +   EV   GRSNVGKSSL+ AL       G+  L R S  PG TQ +N ++ +G PY  LVDLPGYGFA A     + W  +  SYL+ R    LRR  +LIDARHGV   DE  + LLD  AV +Q VLTK D +   +E E  + QV       +H A +P + VTSS  GEG+E LR  +A+L
Sbjct:   11 PEQEARERGRLLFAAQVLFLKGVVAMAGLPP---ADRIEVCFAGRSNVGKSSLINAL------TGRKNLARASNTPGRTQEINFFTTEGGPY--LVDLPGYGFAEAPVAIVKKWQALLKSYLSGRA--TLRRAFVLIDARHGVKAVDEEILQLLDRSAVTFQAVLTKADKISK-AELERVIEQVKGALA--KHPAAYPEIVVTSSEKGEGIETLRAIIATL 215          
BLAST of EWM20415.1 vs. NCBI_GenBank
Match: gi|737778043|ref|WP_035745926.1| (YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis] >gi|672897938|gb|KFI27585.1| GTP-binding protein [Haematobacter missouriensis] >gi|1207780264|gb|OWJ76013.1| YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis] >gi|1207788096|gb|OWJ83415.1| YihA family ribosome biogenesis GTP-binding protein [Haematobacter missouriensis])

HSP 1 Score: 151.369 bits (381), Expect = 1.229e-40
Identity = 95/221 (42.99%), Postives = 125/221 (56.56%), Query Frame = 0
Query:  127 PSSSLRTKAKILFSAPALYHSPASLSYALPPVTSSKHTEVACLGRSNVGKSSLVAALLGGGAGRGKGPLVRTSKRPGCTQTLNLYSLQGHPYFYLVDLPGYGFARAGGRQREAWLEVTLSYLNSRGLDVLRRTLLLIDARHGVMKHDEAAMDLLDEHAVPYQLVLTKVDALKHGSEREETLAQVLRLCTQQRHLACWPIVHVTSSRTGEGVEALRECLASL 347
            P  + R + ++LF+ P  +         LPP   +   EV   GRSNVGKSSL+ AL       G+  L R S  PG TQ +N ++  G  + YLVDLPGYGFA A       W  +  +YL+ R    LRR  +LIDARHG+   DE  + LLD  AV +Q+VLTKVD +  G ERE+ LAQV +     +H A +P + VTSS  GEG+E LR  +A+L
Sbjct:   12 PEDTARERGRLLFAGPVDFLKGVVAMDGLPP---ADRLEVCFAGRSNVGKSSLINAL------TGRKALARASNTPGRTQEINYFT-AGEDH-YLVDLPGYGFAEAPVATVRKWQALLKAYLSGRA--TLRRAFVLIDARHGIKAVDEEILTLLDRSAVTFQVVLTKVDKI-LGPEREKVLAQVRKALA--KHPAAYPEIIVTSSEKGEGIETLRAIIATL 216          
The following BLAST results are available for this feature:
BLAST of EWM20415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100005|gb|EWM20415.1|0.000e+0100.00gtpase [Nannochloropsis gaditana][more]
gi|1057419328|ref|WP_068765420.1|1.256e-4244.39MULTISPECIES: YihA family ribosome biogenesis GTP-... [more]
gi|1131835168|emb|SIS60205.1|4.754e-4242.99GTP-binding protein [Rhodobacter aestuarii][more]
gi|1134242493|ref|WP_076484026.1|5.966e-4242.99YihA family ribosome biogenesis GTP-binding protei... [more]
gi|1188405886|ref|WP_085526751.1|1.199e-4142.13YihA family ribosome biogenesis GTP-binding protei... [more]
gi|1101235748|gb|OIP82899.1|4.411e-4142.98YihA family ribosome biogenesis GTP-binding protei... [more]
gi|565838999|ref|WP_023922441.1|4.478e-4142.99YihA family ribosome biogenesis GTP-binding protei... [more]
gi|1056880365|ref|WP_068296190.1|6.126e-4142.38YihA family ribosome biogenesis GTP-binding protei... [more]
gi|502831112|ref|WP_013066088.1|1.073e-4042.53YihA family ribosome biogenesis GTP-binding protei... [more]
gi|737778043|ref|WP_035745926.1|1.229e-4042.99YihA family ribosome biogenesis GTP-binding protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10290rna10290Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications