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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100050g31.6872.mrna |
| Orig protein id | gnl|cribi|Naga_100050g31.6872 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1000892..1003006 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1029 ID=rna1029|Name=rna1029|organism=Nannochloropsis gaditana|type=mRNA|length=1882bp
CTCAGGTTCTTCACCGCATTCACGAAGTACGACCATGGGAGGGACACGGG
GCAAGCGGGTTCCTGGCAAAAAGAAGCCCAAGTCGGTCAAAGCGAAGGTC
ACATCAAAGATGAGCAGCAAGCGCCGTCTTTCTCGCATGGGAAAGGAGCT
AAAGAAGGGTCAAAAGGGCATTGTTGCCAACTACATGACAAGGAGTCAAG
TTCTGCGCCGATTGCAAATCACTCTGCGAGACTTTCGTCGCCTCTGCATC
TTGAAGGGGATCTACCCCCGGGACCCGAAGAAGCAGGCCTCCGGGAAGGA
CAAGGCATATTACCACATCAAAGACGTGGGATTCTTGTCCCATGAGCCTC
TTCTTAACAAATTTCGTGAATTTAAGGCCTTCATGAAGAAGGTGCGCAAG
GCAGTGTCGCGCGGCGACAAAACCTTGGCCGAGAAGCGGGAGGCGACGGC
CCCGCAATACACCCTCGACCACTTGGTCCGGGAGCGGTACCCCCGCTTCG
ACGACGCGCTGGGAGACCTCGATGACGCCCTCTCCCTCGTCCACCTCTTC
GCGACTCTGCCGGCGGACGGGCCCGTGCAGGCGGCGAGAACGGAGCGATG
TCGGCAGCTTGCCTTGGAGTGGCAGTACTTCGTGGCCCGCGCGCACGCCC
TGACCAAGGTCTTCGTCTCGGTCAAAGGCGTGTACTTCCAGGCGGAGGTG
GGCAGGCAGCCCGTCACCTGGATCGTCCCGCACGCGTTCACGCAGGTGGC
GCCCCCGGACGTGGACTTTCGGATCATGCTCACCTTCCTCGAGTTCTACG
AGACGCTCCTCAAGTTCACCCTCTTCAAACTCTACCACCGGCTCGACATG
GCCTACCCCCCGGCCTTCGACGGGCGCTTGGAGGAGTGTGGCGTCTACAT
GGCCGCCGTGCGTGGGCTGCCCTTGAAGGGAGCCGGGGGCCTCCTCACAG
CATCCGCCTCGGAGGGGCAAAGTGATCGGACAGGGTCGCCGGAAGCGGCT
GCCGCTACTCCGAACCGGAAGGTGAAGGGGTTGGAGGCGAAGCTAGCGCG
ACTCGCGGCGGGGAAAGGGGAAGCAGGGGGTGATGCGGAGGGAAGGGGGG
GGGGAGGGGAGGAGGAAGAGGAAGAATACCTGCCAGAAGGGGCGTTGGCG
GGGGCGTTGGGCCCCGTGATGGAAGATGTGGTGCGGGGCGGGGGCACGAA
GAAGCAAGGGCAGCGCAAGGAGACAGAGGGGGTGGGTGGGGATGAGGGAG
AGGAGATGGAGGAGGACGGGGAGAACCCGGATCCGGAGGTGCTGCGACGG
GCGAAGGAGGAGGCTGCCAAGGCCACGCTCTTCAAGGGCCTCCGGTTCTT
TCTAGGGCGGGAGGTGCCCCTGTCATGGGTCCACCTGGTGCTGGCGAGCT
TCGGCGGGCAGGTGGGCTGGGAGGGGGAAGGCTCGCCCTTTGCGGAGGCA
GACGTGGGGGTCACGCACCAGGTGGTAGACAGGCCGGTGGCCGCGGGTTC
TCGGCGAGCAGGGCGCGAGTACGTGCAGCCTCAGTGGATCTTTGACTCGG
TGAATGCCCGCGTGCGGTTGCCTGTTGACTTGTACGGGCCGGGGAAGTCG
CTGCCGGTAAGCACAAAGAGAGGATTGGCGGGGGGGGAGGGACGGAGAGG
TTGAGGATAAAATGTGCGGGCTGACATGTCGTGAACAAAGCGCCCGGACC
CCATACTCATGCCCTGCGGCCTCCCTGTCATGTGTTATCTCAGCCGCATT
TGTCCCCCTTTGTGGACGACGAGAAGGAGGGTTACATCCCTGCCTATCGA
GAGCAGCTGGAGCTCCTTCAGGGGAAAGCTGCCGCCACTGTTAATGCCGC
AAACTCGAAAGAGGAGGAGGAGGACGCCGACG back to topprotein sequence of rna1029 >rna1029-protein ID=rna1029-protein|Name=rna1029|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MRKKGQTRGEDASENDEAQALAEIMMPRKHRRAYQVARRGEAKQKEKVEA
LVTKRRKLEEAAGVAAPRYATSKRRAGARGTTAVGKGGRGAKTGARVSTR back to topmRNA from alignment at CM002456.1:1000892..1003006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1029 ID=rna1029|Name=rna1029|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp|location=Sequence derived from alignment at CM002456.1:1000892..1003006+ (Nannochloropsis gaditana)
cAATCGTCCGAGGATAGAAAGGTGCGTCTTGCGTTTGAGCGGAGGATCCA
TTCatctgggggggggggggaagggcaccACTCCAAAGGGGGAAGGCATG
TCAGGCACGTTCCCTCACCCGCCCCGTCGGCGCCGCGAGGCGTCAGGGGG
ACACCCGGGGGTGGTTTCGGTCGATGCGTGCATTCTGTTGACAGTTGGGT
GGGAGAGAAATGGGTCCCTTGAAGGGGCTCGGGACGGGTGCCTACGGTTT
GCTCGCCTCGGCGATCGCGGGCACGGCGAGTGATTAACAAGCGCCGTCCA
CATGTTGAGATTGTCGACCTCACTCGTGGCGAGGCGGCCACGGATTTGcc
gcgggaagggaggaggagaagggatgggaggtTGCAGCGGTGTGCGCGCG
TCAGCTGAGCATGTCTGGTGCAtgtccccttttcccctcccgacTGACAT
GAGACTATCCTTCTTGTTCTCTACGTCCTCCCACAGCCGCAAGCTTCGGG
CATGCGCAAGAAAGGTCAGAcgaggggcgaggacgcgTCGGAGAACGACG
AGGCGCAGGCGCTGGCCGAGATCATGATGCCGCGAAAGCACCGGCGGGCC
TACCAAGTCGCCCgccggggggaggccaagcagaaggagaaggtggaggc
actGGTGACCAAGCGACGCAAGCTGGAAGAGGCCGCGGGTGTGGCTGCTC
CCCGTTATGCGACGAGCAAGCGAAGGGCtggggcgagggggacgaCTGCG
gtaggaaagggtgggaggggggcgaagacGGGGGCGCGGGTCTCCACCAG
GTAGACGCGGAGCGACCCGACGCCGAGAGCCCCACGTAGATGGGGAGTGG
GCCGTGTTATGCGAGACTTCTCCGACTGGGACGTTGTGAGAGAGGGGCTA
GCAAAACCTTGACGAAGCTCCAAATAGAAATGTAAGTAAAGTATTACCCT
ACGAGCGCGGTTACCAGCTTGAACAGTACTCAAGATGTTTGTTTTCACTT
AGGTTACCTAGTGAGGCGTTGAAGTGTGTCGTGTTATGTTGGCTGCGAAG
ACAACGATCTGACAAGGTGCCCATCTCTGCAGTAAATAGTATTGCTCGTG
CTTACGCGGAAGGCGGAATGGCGCGGACATACGAAATTTATATGCGCATT
GGCACTCAGGGCAAGAAAattaaaaaataaaaagatcGCGTGTACGAGGC
TTCACATGAAAGGGGGGACTGAAAAGTCCCTTGAATTTGATTGGATGTGA
CTCGAGCATGTCAGCGCTCATGAACTTAAGCTGATGCTTAACCACCGAAG
CCGTACAGAGTGCGGCCCTGTCGCTTCAGAGCGTACACGACATCAAGAGC
CGTGACGGTCTTGCGGCGGGCGTGCTCAGTGTAGGTGACGGAATCACGGA
TGACGTTCTCCAGGAAGACCTTGAGCACACCGCGGGTCTCCTCGTAGATG
AGGCCCGAGATACGCTTGACACCACCTCGGCGGGCCAAACGACGGATGGC
GGGCTTGGTAATGCCCTGGATGTTGTCACGCAACACCTTGCGGTGGCGCT
TAGCGCCGCCTTTGCCGAggcccttgccgcccttgccgcGTCCAGACATG
ATTTGAGAGTTTGGGTGTGTTGAACTGCCAAGATAGGAATATAAGACAAT
GAATGAGATTTTCATTAGACAAGATGTGTGAAGTCCCTCAAAAAGGATTT
GAGACACCGTGCAAGAGCGATTGTGTGTATGCACGGGCGCATGAGTGCTT
TTATGTCGTACGATATGGGAACACGAGAAGTCGAGGgttgggcgggaagg
gggatgagggactCACGAGACATATCGACCAGTGAGAACGACAGAAACGC
ACTTGCGATTTCTGATAGACAATTGATCTatcgaggaagaaaactCTTTT
TCTCTTTGTGGCCATGAGAAACAGTAGGATGCCTAAGATGGAAGCACAAT
CACGCAGACGCGGAGTGGAAAGGGCACGACGGACGTGACTTTTGATTTGG
CGAGGGTGTGGGGGAGCAAAAGGAATAAAATGCACCAAGAACCGTTTAAT
TTCAAATACACATGAGTGACGCCATTCCTAAAAACAACTAGACAGTCGTG
TAGCCGCAAAAAACT back to topCoding sequence (CDS) from alignment at CM002456.1:1000892..1003006+ >rna1029 ID=rna1029|Name=rna1029|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002456.1:1000892..1003006+ (Nannochloropsis gaditana)
ATGCGCAAGAAAGGTCAGAcgaggggcgaggacgcgTCGGAGAACGACGA
GGCGCAGGCGCTGGCCGAGATCATGATGCCGCGAAAGCACCGGCGGGCCT
ACCAAGTCGCCCgccggggggaggccaagcagaaggagaaggtggaggca
ctGGTGACCAAGCGACGCAAGCTGGAAGAGGCCGCGGGTGTGGCTGCTCC
CCGTTATGCGACGAGCAAGCGAAGGGCtggggcgagggggacgaCTGCGg
taggaaagggtgggaggggggcgaagacGGGGGCGCGGGTCTCCACCAGG
TAG back to top
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