rna10288, rna10288 (mRNA) Nannochloropsis gaditana

Overview
Namerna10288
Unique Namerna10288
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length660
Alignment locationKK037270.1:1674..2383 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101490g1.5284.mrna
Orig protein idgnl|cribi|Naga_101490g1.5284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:1674..2383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101490g1gene9989Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10288rna10288-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20416.1cds10257Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10288 ID=rna10288|Name=rna10288|organism=Nannochloropsis gaditana|type=mRNA|length=660bp
ATGGATGCCACGGTATGTGCTCCAATGAGGTCCATGGCTGAACAAAGTCC
GCTGAATGCATGCCTTGGGATTCGTCTGGTGGTCTCCAATATTAAAGATA
TCTGCCGTCAATACCCATCATCCACGATCCAAGACATGTTGAGAGTCGTG
GATGACAGCCTCGCTTTTCTTGAGCACGTGCAGGCTGAGGAGTGGCTCCG
AGCAGCTCTGCGAGGAGGGGGAACGGATGTGTTGAAGGTGGTCGACGACA
TCCCACCGAGTCTTGCCTCCGCATCCGGAATTAGCCTTGGCCGTTCCTCG
ACACATGCCAGTGGAGCAATTGACGGACGAGTAACTGCGCTCAAACACCT
TCTGGATGGCGAGTTCAGTGGACTCTCCGCTCGGTACTGTCCTGGAAAAT
CCGAGTCAATATCCTGGACAAAGCTTCGCAGACCTGATTCAGGCACTCTG
TCGTGGGGAAAAGAGTGGCAGCAGAGTTTGTGCGCCCCTCACACGGCCTG
CGGTAGATGCCACTTGAGACGCAGTGGGGCTATTTTAGGGGCTGTGGAAA
GTAGCACCAAGCCTGTCGGAACTTTGCGGGCCCAATCGCAGCAACCAAAC
AAGCGCCAAAGGCGACGTAGAGCGCCTATCCAAAGATTTCAGGAAGGCCC
TCGGTCATAA
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protein sequence of rna10288

>rna10288-protein ID=rna10288-protein|Name=rna10288|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MPVALAEQTFFTPAKLDHQAYSKPRCDGAAPNVQLILTGLKRRVDHYHYS
VDCPTCSLPGPEGEEKANRRL
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mRNA from alignment at KK037270.1:1674..2383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10288 ID=rna10288|Name=rna10288|organism=Nannochloropsis gaditana|type=mRNA|length=710bp|location=Sequence derived from alignment at KK037270.1:1674..2383- (Nannochloropsis gaditana)
AGGCCCTCCTCCCCCGGCCAAGCCTTGCTTGCCTCCCGGAAAGGGCAAAC
CTGGAGCAGCATGCCTGTCGCGCTCGCGGAGCAAACCTTCTTCACCCCCG
CCAAACTCGACCACCAAGCCTATAGCAAGCCTCGCTGTGACGGGGCGGCT
CCCAACGTGCAATTGATCTTGACAGGGCTGAAACGCCGGGTCGATCATTA
CCATTACAGCGTGGTGAGGGGGAGGAGAAGGGAAGGATGCGTAGGGGAAG
GGGAGAGGGGAAGGTGCAGGGAGGCATCAAAGGCGTAGGGAGAGCTGGAG
GTCTGTCTAAGGATAGGATCGGCCTCGGCTCTTGTCTCCCGCTCCTTTTG
GTGGGACATCGGCAGCCTCGAAGCACACCGGCTTGCGAGTTTGGCTTGCC
TCCATCGATGGTGCTTGGCGACGCTTGATGCTCCATTTATCTACATATCT
TTATACATATTATGTGTTAATCTTTCAATGTACGCCTGACTATTTACTCT
TCATACTTTCTACACGCTGATCCCATTCCAGGACTGCCCGACCTGCTCTT
TGCCGGGGCCGGAGGGGGAGGAGAAGGCAAATCGACGCCTATGATCGGTG
CAACACACAGGTCCTGAGGCACTGAGAGGCGGAGGCGAGAATGATTGTGT
TGAGCTAGGTTTTTCATGAAAGGAAAGCAATAACGGTCGTTTATCCGAGT
AGCGAGTCGG
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Coding sequence (CDS) from alignment at KK037270.1:1674..2383-

>rna10288 ID=rna10288|Name=rna10288|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at KK037270.1:1674..2383- (Nannochloropsis gaditana)
GACTGCCCGACCTGCTCTTTGCCGGGGCCGGAGGGGGAGGAGAAGGCAAA
TCGACGCCTATGAATGCCTGTCGCGCTCGCGGAGCAAACCTTCTTCACCC
CCGCCAAACTCGACCACCAAGCCTATAGCAAGCCTCGCTGTGACGGGGCG
GCTCCCAACGTGCAATTGATCTTGACAGGGCTGAAACGCCGGGTCGATCA
TTACCATTACAGCGTGGACTGCCCGACCTGCTCTTTGCCGGGGCCGGAGG
GGGAGGAGAAGGCAAATCGACGCCTATGAATGCCTGTCGCGCTCGCGGAG
CAAACCTTCTTCACCCCCGCCAAACTCGACCACCAAGCCTATAGCAAGCC
TCGCTGTGACGGGGCGGCTCCCAACGTGCAATTGATCTTGACAGGGCTGA
AACGCCGGGTCGATCATTACCATTACAGCGTG
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Synonyms
Publications