rna10285, rna10285 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10285
Unique Name	rna10285
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3979
Alignment location	KK037269.1:37773..38964 +

Link to JBrowse

Properties


Property Name	Value
Product	Dimeric alpha-beta barrel
Orig transcript id	gnl\|cribi\|Naga_100386g2.5769.mrna
Orig protein id	gnl\|cribi\|Naga_100386g2.5769
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037269.1	supercontig	KK037269.1:37773..38964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100386g2	gene9986	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10285	rna10285-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20419.1	cds10254	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037269.1:37773..38964+
coding sequence from alignment at KK037269.1:37773..38964+

mRNA sequence

>rna10285 ID=rna10285|Name=rna10285|organism=Nannochloropsis gaditana|type=mRNA|length=3979bp
ATGCAGCCAAGAAATCGGAGCTCAGTGCCGTACCTGCTCCGGCTCTACCA
CGTCAAGCGGGAGCTCGATCAGAACGAGGCCAAGCTCTCCGTCGTCCGCT
CGGAATTCGTCCAGGCCCTGGAGCAGGAGCAGTCCCTGGAAAGCACCATC
CAGGCAGAGAAAGCGGAGGCGGCGGTCCTGCAGAGGGACGTGGGCAAGGC
CGAAAAGGAGCAGGCCAAGCGACGGGAGCGGCTGGAGGCTTTAGCCCCGG
GGAAAATCAAGGAAGAACAAGGGCTCAAGGCCCGGCAAGAAAAGCTCAAG
GCGGAGAAGGAGGCGGGTATGAGCATGCGCGAAGACTTGCTGCAGCAGAA
GGAAAGAAAGAAGGGACTGGCAGAGGACATCGCCAAGCTGGAAGCCACGG
AGCAGGAGCTGCAGATCAAGCAAGCGGAGGCGTTGGAGGAGATGCGGGCG
AGCGGGGTCACACTCTCTGAGGCCAAGCTCCAAGAGTACAACAAGCTCAA
GCAGCAGGTGTCGGCGCAGTGCCAGGAGGGGAAGGCGCGTCTGCAGGCGT
TGGTCCGACAGCAAGAGGCAGACAAGACCGAAGCCGCTGTCCAAGAGAGA
GAACTCTCCCTCCATCTCGCTACCAAGGAATCAGCAGCCCGCGACATCGA
GCAGCAGAGCGCCAAGACCCAGCAGTTGAGCGCTGACTTGCAGAAGAGGG
CCAAGGAGAGCGAGGTGCGGGCGGAGATGAAGGGGTTAGAGGATCAGCAA
CGGGCTTACCGGCAGGAGCGAAAGCAATCTCAACATGAGGAGAAGATGGC
GGCCGCGTTGGAGATTATGAAAGACATGTACCCGGGCGTAAAGGGCCGCC
TGGTCGACCTGTGTCGGGAGCAACGTGTCGGTGTCGCAGATTTCATCCCC
CTGTCGGGCATCAAAGACAAGTCGCCCAATGAACGCTATCGGGCCCTGGG
CGAAGCCTTTCGCCTGGCTGTGGATGTCATCGAGTGCGAAGACGAGATCC
GCCCTGCTGTCGCCTACGCAGTGGGACCCAATACCGTCATCTGCGACTCT
CTGGATGACGCTCGGCATCTCTGCTTTCGGAAGAATGAGAAGGTGAAAGC
AGTGACCCTTTCCGGGTCGGTCATTGCCAAGGACGGGACTATGACGGGCG
GGAAGGTTGAGGAGGCAGGCGGGGGAAGGAAGGGAGGGGGGGGCACGACC
GGGAGATGGGACGCGCAAGACATGCGGACGGTAAAAGAAAAACTGGAGGC
GCTGGAGGCGGAGGCGAAGGAAATAAGCAGGGGCCGTAGCAAGCAGGCGC
TCGCAGACAAATCCACGGCCTTGAATCAATTGCGCTCGCGCCTGGCTACT
ACAGACCAGGCCGTCGCCTTTTGTCAAAGCCGGATCAAGGAATTGACAGT
CCAACTCCAAGCGGCCGAGAAGGCTGCAGGCAAAGTTCAAACTGCTCAAG
ATGCGCTCTCCGCGAGAGTCTCGACGAGGCAGAAGGAAATGCAGGAGGTG
AGAACAAGTATGGAGGCCGTGGAGGACAAGATCTTCGCTGCTTTCTGCAA
GGCCCTATCCTTGAAGAACATCCGCGAGTACGAGGAGCGCGAGCTCAAGG
CCATGCGTGAGTGGGAAGAAAAGTTGGCCTCCCTGAGGGACCACAGGGAC
AAGCTCCGCGCTCAGCTCGATTACGAAGAAGGGCGAGACTTCGAGGAGCC
TCTAAGGAAGGCCATAGAAAAGGTCAAGGCGCTCAAGGCTGAAATTAAGA
CTGGCGAGGATAGTCTGGCGTCTTTGCACAAGAAGGAGGAGGGTCTCAAG
GAAGCGATGCAGGAAGCGGAGGCCACGTTGGCTGAAGCGAAGTCCCTGTA
CGAGGAAAAACAGAAACTTGTCCGGGGACTGACGAAGAAGCGCACCTCCT
CAGTCGCTGCCCGGACGGAGATCGCAAGTAAGATCACGCACGAAGAAAGC
GCCTTGGAGCGCATTCGGGCCCGCATACACGACATCCTGCAGAAGGCGCG
CGTGGACGAGGTTGACCTTCCCATGCTTGATAACGCGGAGGAGGGAGAGG
ATGGCGAGGAAGATGGGGAGGAAAGCGAGGAGACTGAAAGCGAAGCAGGG
AGCGGGATGAAGAAGCTGCGAGGGTCGACTTCAACCGCCTCTTCCTCCTT
CTCGGGCGGTGGGGAGGCAAGCACGCATCCCTCCCATAGTCAGGCTCCCA
GGATCAGGAAGGATAGAAAGGAGCTGGACAAGATCAACTTCTCCTCCCTT
CCCAAAAAAGAGAAGGTCGCCAAGGCCCGTGACGAGCTCGAGACTACCCG
TAAGCGCTACCATGATAGAATCGCCGATCTTCAAGGCGAGGTAGAAAAGA
TGCAGCCGAACATGCGGGCCCTGGAAAAATATGAGGAGATGAGCCGCCGG
GTCAAGGAGGTAGGCAAATCAATTGTCCAAGGCGACAGCCTGGGCTCACC
CTCCGTGAGTTCTAGATCCAAATCGCCTTTCCCTTTTTCCCTCGTGTCCC
GCGCCTTTTTCCTTCATCCTCCAGGCGGGCGACGAGTACGAGGCGGCCAA
AAAGGCGGCTCAGGAGAGCAATGCCCTCTATTCCCACCTGCGACAAGACC
GATACGAAAAGTTCATGGACTGCTTCGGGCACGTCTCGGATGCCCTGACC
AGTATCTACAAGGACTTGACGAAAAGCAGCAAGCACCCGCTCGGAGGACA
GGCCTACCTCTCACTAGACGACTCAGACGAGCCCTACCTCGGAGGCGTCG
CTTACAACGCCATGCCCCCCATGAAGCGGTAGGCTCCATTCAAGCATTCA
TGCATCGACATTCTCGTCCCAGATGTCCTCCAGCTTTTTGCGCACCTCTC
ATTCGTCTTCCTTTTGCCTGTTGTCCACCCTTTCCTGTGCAGGTTCCGGG
ACATGGAACAGCTTTCGGGCGGAGAAAAAACAGTCGCTGCCCTGGCCTTA
CTTTTCGCCATCCACTCCTACAGACCAGCCCCCTTTTTCGTGCTGGACGA
GGTGGACGCCGCCCTCGACAACGTGAACGTCCGTAAAGTCTGCCATTACA
TCAAACAGCGATCGGGAGAATTCCAGTGCCTGGTGATCTCCCTGAAGGAC
ATGTTCTACGAAAACGCCAATGCGCTCGTGGGCGTCTGCCGAGACAAGGC
CTCCAATGGCTCTCGCACGCTGACGCTGGATCTGGACCAGTTCGATGTGC
AGCCAGAAGACGACGTTGATGAACAAGGAAGGGGTTATGGGCCTGAGGAG
GTGGAAGGGAACTGAGAGGTATAGACGCGGGGCACGCTCGTGCCAACAAG
TCGGTGAATATGAAATCAAGCATGCAAACTGCTCGTGGGACGTGAGCGAA
AAGCCAGCAAAGAATGCACATGAGCACAGTCGAACAGAAGACGCAGACAA
AGGATGTATGGATCGCCGCTTTACAAGGATTTGGAGAAAGCGTCGTAGCC
TGGATGCACAATATGTTGATTTTTACACCTATTTACATGTCTTGATTGCC
AATGTAGCCTCACTTTCTCTTCAACGCAGAACGTCTTGACAAAGACCGAT
GGCTACTGAGTCCTAAAGGCTATTCCACCAACGGATTTGTGGTAAAAGGT
GTCCGAGCCGTCAATTTCCCCGGATTACCAGTTACCACGAAATATCCGCA
CACAACCTCTGGACCGTCCTGTCTACACACTTCGCAGACCCGGATATTCT
TGCATCGGGCAACGTTGCCATAATTTGTCGTGATATTGGCACATTGCTGA
GTGAAGAAACAATTTGTGTACCCTTGATATGGGGGTGCTCTCCGAAGGCC
TGCCCCAGTAAAATTCGCCGTCTTTAAAGGTTTTAAGGCTCCCTCCTCCA
AAAGTTGTAGCTTCCGTGGGTAATGTTGGTACCTCAACACAGCCAGATGC
GCATGATTTTGGCTGCGTAAGTGCCAACGCGACGGATAGTGTTCAGGTCC
TTCTCCCCTTAAAATAACTCCGCCTTTTT

protein sequence of rna10285

>rna10285-protein ID=rna10285-protein|Name=rna10285|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIR
HTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRRE
PHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADA
YVKAGLVKVWQVRQWTVVAGSKI

mRNA from alignment at KK037269.1:37773..38964+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10285 ID=rna10285|Name=rna10285|organism=Nannochloropsis gaditana|type=mRNA|length=1192bp|location=Sequence derived from alignment at KK037269.1:37773..38964+ (Nannochloropsis gaditana)
GAGGTTGTCGGCCTGAAGATGATACCAAGGCCAGGCTAGCCAATTCAACA
AAAAATAAAATACTCTGGCAATGACTGAATTACCACATAATCATAGATAT
AAGTGCCTGGCTGAAAATCATTATGAGTGGACGTAGACAGAGCAGAAGTT
CCACAGCACGGGGAAGACGAATGTTCGGTCCCCGAGTATTTCGAGCGAGC
CGGCGATCTCCTATGCTCTGTTTCTTGCGGACATGAAGGTAACAAAAGTT
AAATTCAGTCATAGAATACAATCAATAAATTGGCTGCGTTTCGAATGTAC
AGTTACACGCAGGTGCAAGTGCATGTTGCATTCTGTACCAGGCATGCttg
cctccagggcctcctgCCGCTTTTCAATCAGACATACTTTCCAACTGAAC
GCAACGCAGCGGTTCCCAACTCAGCCTTTGCTCCAACACAAAAGAGGTGC
GACAGCATGTCAGTGGACATGGATCTAGGTCATAGGGCAGAGAATGAGTA
GTGGGTGTCTTCAATAAGCCCActgaccttcctcccgttccccttCACTG
CGGATAGTGATGTCCTCTGCGCAGGCTATCACGCCTACTACACTCTGGCT
CTTGCAGTACCACTATGTGAATGATATTCTTGATAGACGGGAGCCTCACC
GTGCAGAACACTTGGCGGGCCTGACTCAAGcagcaaaggaagggagcttG
GTCCTCGGTACGTGAGGAGGGAATTCGAAGGTGGGAGAGATGTAGGGGAC
AAGAGAAGGTAGAGGGTTTGTCTGGTCGAGGCCGCTGAGATGAGATAGTT
TAGCCATGTTGCTGATATGCAGATGAACACAATTAGGAGAAGGCGTGCAT
GCAAAAATTTGACTCCCGACCGTAAAAGCGCGATTATCGTGTGAATGAAC
CCTCATTCGCTTGATCGCTTTTGTCTCAACGCCCCTCTCGTCGCCACCAT
GGGGTGCCGCCATACCTATCTCTCAGGCGGTGCGCTGGCCGATCCTGTTG
ATATGGGTGTTCTCGTTTTCACCGACAAAAGTGTGGCGGAGAATTTTGCT
GCCGCAGACGCCTATGTGAAAGCGGGCCTGGTCAAGGTGTGGCAAGTACG
ACAGTGGACTGTCGTGGCGGGTTCGAAGAtctgagggggaagggacagaa
AGGATCATGGAAGCGAAAGAAGCAACTGCATAGGACAACATT

Coding sequence (CDS) from alignment at KK037269.1:37773..38964+

>rna10285 ID=rna10285|Name=rna10285|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at KK037269.1:37773..38964+ (Nannochloropsis gaditana)
ATGAAGGTAACAAAAGTTAAATTCAGTCATAGAATACAATCAATAAATTG
GCTGCGTTTCGAATGTACAGTTACACGCAGGTGCAAGTGCATGTTGCATT
CTGTACCAGGCATGCttgcctccagggcctcctgCCGCTTTTCAATCAGA
CATACTTTCCAACTGAACGCAACGCAGCGGTTCCCAACTCAGCCTTTGCT
CCAACACAAAAGAGTGATGTCCTCTGCGCAGGCTATCACGCCTACTACAC
TCTGGCTCTTGCAGTACCACTATGTGAATGATATTCTTGATAGACGGGAG
CCTCACCGTGCAGAACACTTGGCGGGCCTGACTCAAGcagcaaaggaagg
gagcttGGTCCTCGGCGGTGCGCTGGCCGATCCTGTTGATATGGGTGTTC
TCGTTTTCACCGACAAAAGTGTGGCGGAGAATTTTGCTGCCGCAGACGCC
TATGTGAAAGCGGGCCTGGTCAAGGTGTGGCAAGTACGACAGTGGACTGT
CGTGGCGGGTTCGAAGAtctgaATGAAGGTAACAAAAGTTAAATTCAGTC
ATAGAATACAATCAATAAATTGGCTGCGTTTCGAATGTACAGTTACACGC
AGGTGCAAGTGCATGTTGCATTCTGTACCAGGCATGCttgcctccagggc
ctcctgCCGCTTTTCAATCAGACATACTTTCCAACTGAACGCAACGCAGC
GGTTCCCAACTCAGCCTTTGCTCCAACACAAAAGAGTGATGTCCTCTGCG
CAGGCTATCACGCCTACTACACTCTGGCTCTTGCAGTACCACTATGTGAA
TGATATTCTTGATAGACGGGAGCCTCACCGTGCAGAACACTTGGCGGGCC
TGACTCAAGcagcaaaggaagggagcttGGTCCTCGGCGGTGCGCTGGCC
GATCCTGTTGATATGGGTGTTCTCGTTTTCACCGACAAAAGTGTGGCGGA
GAATTTTGCTGCCGCAGACGCCTATGTGAAAGCGGGCCTGGTCAAGGTGT
GGCAAGTACGACAGTGGACTGTCGTGGCGGGTTCGAAGAtctgaATGAAG
GTAACAAAAGTTAAATTCAGTCATAGAATACAATCAATAAATTGGCTGCG
TTTCGAATGTACAGTTACACGCAGGTGCAAGTGCATGTTGCATTCTGTAC
CAGGCATGCttgcctccagggcctcctgCCGCTTTTCAATCAGACATACT
TTCCAACTGAACGCAACGCAGCGGTTCCCAACTCAGCCTTTGCTCCAACA
CAAAAGAGTGATGTCCTCTGCGCAGGCTATCACGCCTACTACACTCTGGC
TCTTGCAGTACCACTATGTGAATGATATTCTTGATAGACGGGAGCCTCAC
CGTGCAGAACACTTGGCGGGCCTGACTCAAGcagcaaaggaagggagctt
GGTCCTCGGCGGTGCGCTGGCCGATCCTGTTGATATGGGTGTTCTCGTTT
TCACCGACAAAAGTGTGGCGGAGAATTTTGCTGCCGCAGACGCCTATGTG
AAAGCGGGCCTGGTCAAGGTGTGGCAAGTACGACAGTGGACTGTCGTGGC
GGGTTCGAAGAtctga

Synonyms

Publications