EWM20419.1, cds10254 (CDS) Nannochloropsis gaditana

Overview
NameEWM20419.1
Unique Namecds10254
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:38005..38218 +
Alignment locationKK037269.1:38330..38479 +
Alignment locationKK037269.1:38749..38906 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20419.1
ProductDimeric alpha-beta barrel
Orig transcript idgnl|cribi|Naga_100386g2.5769.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:38005..38218 +
KK037269.1supercontigKK037269.1:38330..38479 +
KK037269.1supercontigKK037269.1:38749..38906 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR005545YCII
Homology
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|585100013|gb|EWM20419.1| (Dimeric alpha-beta barrel [Nannochloropsis gaditana])

HSP 1 Score: 362.073 bits (928), Expect = 1.036e-126
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173
            MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI
Sbjct:    1 MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|553180030|ref|XP_005852806.1| (hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526] >gi|553189450|ref|XP_005855006.1| hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >gi|422294060|gb|EKU21360.1| hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >gi|422295728|gb|EKU23027.1| hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.297 bits (521), Expect = 1.029e-65
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
Query:   72 VMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173
            VMSSAQAITPTTLWLLQYHYVNDILDRR PHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVK WQVRQWTVVAGSKI
Sbjct:    8 VMSSAQAITPTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVRQWTVVAGSKI 109          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|953491654|emb|CEG45663.1| (YCII-related [Plasmopara halstedii])

HSP 1 Score: 106.301 bits (264), Expect = 1.582e-26
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 0
Query:   56 NATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVF--TDKSVAENFAAADAYVKAGLVKVWQVRQWTVV 168
            N   +  ++PL    R MS   A+T    ++L+Y YV+DIL+RR P+RAEHL     A K+G++V+GGAL DP D GV +F  +DK + E FA +D YV   LV  + +R+WTVV
Sbjct:    4 NGISKVFSRPLSPLSRAMS---AVTDKKYYILRYEYVHDILNRRGPYRAEHLERAVTAKKDGNVVMGGALVDPPDAGVFIFNVSDKKIIEKFATSDPYVLNNLVTSYSIREWTVV 115          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|693499186|emb|CEF98724.1| (YCII-related [Ostreococcus tauri])

HSP 1 Score: 102.449 bits (254), Expect = 1.348e-24
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   68 QHKRVMSS-----AQAITPT-TLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFT--DKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
            +H RV+ S     A +  P+ + WLL  +YV ++ +RR P+R EHLAG + +  +G  V+ GAL DPVD GV VF   D+SV   FA  DAYVK GLV  W VR WTVV G+
Sbjct:   42 KHCRVVKSRSSAVAMSAAPSNSYWLLTLNYVENMAERRGPYREEHLAGASASHAKGECVMAGALTDPVDTGVFVFKNCDESVVRAFAENDAYVKNGLVTSWNVRPWTVVVGN 153          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|1199292297|gb|OUS47385.1| (hypothetical protein BE221DRAFT_72232 [Ostreococcus tauri])

HSP 1 Score: 99.7525 bits (247), Expect = 3.391e-24
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
Query:   77 QAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFT--DKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
             A    + WLL  +YV ++ +RR P+R EHLAG + +  +G  V+ GAL DPVD GV VF   D+SV   FA  DAYVK GLV  W VR WTVV G+
Sbjct:    2 SAAPSNSYWLLTLNYVENMAERRGPYREEHLAGASASHAKGECVMAGALTDPVDTGVFVFKNCDESVVRAFAENDAYVKNGLVTSWNVRPWTVVVGN 98          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|922859290|gb|KOO27323.1| (hypothetical protein Ctob_010138 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 102.834 bits (255), Expect = 8.793e-24
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   71 RVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
            R +SS+   T   L LL Y YV+D +++R+P+RA HL     +   G L+LGGALA+PVD GVL+FT  + AE FA  D YV  G+V  W VR+W+VV GS
Sbjct:   18 RALSSSAPPTVRPLHLLLYQYVDDAVEKRQPYRANHLGHARASIDRGELLLGGALANPVDGGVLIFTAGAAAERFAETDPYVLNGIVTSWTVREWSVVVGS 118          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|493316287|ref|WP_006273669.1| (hypothetical protein [Asticcacaulis biprosthecium] >gi|328841897|gb|EGF91467.1| yciI-like protein [Asticcacaulis biprosthecum C19])

HSP 1 Score: 97.0561 bits (240), Expect = 4.298e-23
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   85 WLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVF--TDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSK 172
            +LL Y +V+D LDRR   R  HL   + AA  G LVLGGALA+P D GVL+F   D SVAENFA +D YV  GLV+ W+VR+WT V G  
Sbjct:    4 FLLFYDFVDDYLDRRGEFRGVHLDLASAAADRGDLVLGGALANPADGGVLLFLGADSSVAENFAQSDPYVVNGLVRSWKVREWTTVVGDS 93          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|493521877|ref|WP_006475974.1| (MULTISPECIES: hypothetical protein [Burkholderia] >gi|105898264|gb|ABF81222.1| YCII-related protein [Burkholderia cenocepacia AU 1054] >gi|116647830|gb|ABK08471.1| YCII-related protein [Burkholderia cenocepacia HI2424] >gi|124870170|gb|EAY61886.1| hypothetical protein BCPG_00092 [Burkholderia cenocepacia PC184] >gi|169816319|gb|ACA90902.1| YCII-related [Burkholderia cenocepacia MC0-3] >gi|721516310|gb|KGY59747.1| hypothetical protein DK10_06690 [Burkholderia cenocepacia] >gi|923378110|gb|KOR20129.1| hypothetical protein ABW54_18350 [Burkholderia cenocepacia] >gi|1061598764|gb|AOJ21783.1| hypothetical protein WJ11_20555 [Burkholderia cenocepacia] >gi|1087459049|emb|SDR18823.1| hypothetical protein SAMN05443026_3185 [Burkholderia cenocepacia] >gi|1144540164|gb|ONV90365.1| hypothetical protein A8E89_15675 [Burkholderia cenocepacia] >gi|1144562543|gb|ONW12425.1| hypothetical protein A8E90_23805 [Burkholderia cenocepacia] >gi|1144570463|gb|ONW20206.1| hypothetical protein A8E94_05810 [Burkholderia cenocepacia] >gi|1144584814|gb|ONW34332.1| hypothetical protein A8E95_11475 [Burkholderia cenocepacia] >gi|1144590111|gb|ONW39546.1| hypothetical protein A8E93_19390 [Burkholderia cenocepacia] >gi|1144594145|gb|ONW43513.1| hypothetical protein A8E99_15315 [Burkholderia cenocepacia] >gi|1144597396|gb|ONW46710.1| hypothetical protein A8E92_20600 [Burkholderia cenocepacia] >gi|1144606105|gb|ONW55283.1| hypothetical protein A8E91_32065 [Burkholderia cenocepacia] >gi|1144610704|gb|ONW59818.1| hypothetical protein A8E98_23970 [Burkholderia cenocepacia] >gi|1144619831|gb|ONW68822.1| hypothetical protein A8E97_14810 [Burkholderia cenocepacia] >gi|1147477950|gb|AQQ26466.1| hypothetical protein A8E88_12755 [Burkholderia cenocepacia] >gi|1147484725|gb|AQQ32499.1| hypothetical protein A8E96_08685 [Burkholderia cenocepacia] >gi|1150394828|gb|AQT50143.1| hypothetical protein BHQ31_08930 [Burkholderia cenocepacia])

HSP 1 Score: 95.5153 bits (236), Expect = 1.616e-22
Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0
Query:   85 WLLQYHYVNDILDRREPHRAEHLAGLTQAAKE-GSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
            + L Y  V+D L RREP RAEHLA L QAA E G LVL GALADP D  VLVF   S   AE+FA AD YV+ GLVK W+VR W VV G
Sbjct:    3 YQLIYELVDDYLSRREPFRAEHLA-LAQAATERGELVLAGALADPADQAVLVFEGDSPEAAESFARADPYVQNGLVKSWRVRPWRVVVG 90          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|981368956|ref|WP_059583421.1| (hypothetical protein [Burkholderia anthina] >gi|976497942|gb|KVD98669.1| hypothetical protein WS65_31020 [Burkholderia anthina] >gi|976814819|gb|KVH05907.1| hypothetical protein WS85_27365 [Burkholderia anthina] >gi|976821027|gb|KVH12004.1| hypothetical protein WS84_11100 [Burkholderia anthina] >gi|978389339|gb|KVM87480.1| hypothetical protein WT06_21160 [Burkholderia anthina] >gi|978466223|gb|KVN63230.1| hypothetical protein WT13_13455 [Burkholderia anthina] >gi|979568854|gb|KVX33646.1| hypothetical protein WT32_19565 [Burkholderia anthina] >gi|980471771|gb|KWH49974.1| hypothetical protein WT63_07300 [Burkholderia anthina] >gi|985248716|gb|KWZ35381.1| hypothetical protein WS64_07470 [Burkholderia anthina])

HSP 1 Score: 94.3597 bits (233), Expect = 3.376e-22
Identity = 55/87 (63.22%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   87 LQYHYVNDILDRREPHRAEHLAGLTQAAKE-GSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
            L Y  V+D L RREP RAEHLA L QAA E G LVL GALADP D  VLVF   S   AE+FA AD YV+ GLVK W+VR W VV G
Sbjct:    5 LIYELVDDYLSRREPLRAEHLA-LAQAATERGELVLAGALADPADQAVLVFEGDSPEAAESFARADPYVQNGLVKSWRVRPWRVVVG 90          
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|403074468|gb|AFR16048.1| (YciI-like protein [Burkholderia pseudomallei BPC006])

HSP 1 Score: 95.1301 bits (235), Expect = 3.665e-22
Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   81 PTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
            P   +LL Y  V+D LDRR  +RA+HLA    A   G L+L GALADP D  VLVF   S  VAE FA AD YV  GLVK W+VR WTVV G
Sbjct:   20 PFMYYLLTYELVDDYLDRRGAYRADHLALAKAATARGELLLAGALADPADEAVLVFDAPSPAVAEAFAQADPYVANGLVKRWRVRPWTVVTG 111          
The following BLAST results are available for this feature:
BLAST of EWM20419.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100013|gb|EWM20419.1|1.036e-126100.00Dimeric alpha-beta barrel [Nannochloropsis gaditan... [more]
gi|553180030|ref|XP_005852806.1|1.029e-6598.04hypothetical protein NGA_0391902 [Nannochloropsis ... [more]
gi|953491654|emb|CEG45663.1|1.582e-2645.22YCII-related [Plasmopara halstedii][more]
gi|693499186|emb|CEF98724.1|1.348e-2448.21YCII-related [Ostreococcus tauri][more]
gi|1199292297|gb|OUS47385.1|3.391e-2450.52hypothetical protein BE221DRAFT_72232 [Ostreococcu... [more]
gi|922859290|gb|KOO27323.1|8.793e-2449.50hypothetical protein Ctob_010138 [Chrysochromulina... [more]
gi|493316287|ref|WP_006273669.1|4.298e-2355.56hypothetical protein [Asticcacaulis biprosthecium]... [more]
gi|493521877|ref|WP_006475974.1|1.616e-2261.80MULTISPECIES: hypothetical protein [Burkholderia] ... [more]
gi|981368956|ref|WP_059583421.1|3.376e-2263.22hypothetical protein [Burkholderia anthina] >gi|97... [more]
gi|403074468|gb|AFR16048.1|3.665e-2256.52YciI-like protein [Burkholderia pseudomallei BPC00... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10285rna10285Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications