EWM20419.1, cds10254 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|585100013|gb|EWM20419.1| (Dimeric alpha-beta barrel [Nannochloropsis gaditana]) HSP 1 Score: 362.073 bits (928), Expect = 1.036e-126 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173
MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI
Sbjct: 1 MKVTKVKFSHRIQSINWLRFECTVTRRCKCMLHSVPGMLASRASCRFSIRHTFQLNATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|553180030|ref|XP_005852806.1| (hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526] >gi|553189450|ref|XP_005855006.1| hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >gi|422294060|gb|EKU21360.1| hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526] >gi|422295728|gb|EKU23027.1| hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 205.297 bits (521), Expect = 1.029e-65 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
Query: 72 VMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSKI 173
VMSSAQAITPTTLWLLQYHYVNDILDRR PHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVK WQVRQWTVVAGSKI
Sbjct: 8 VMSSAQAITPTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVRQWTVVAGSKI 109
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|953491654|emb|CEG45663.1| (YCII-related [Plasmopara halstedii]) HSP 1 Score: 106.301 bits (264), Expect = 1.582e-26 Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 0
Query: 56 NATQRFPTQPLLQHKRVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVF--TDKSVAENFAAADAYVKAGLVKVWQVRQWTVV 168
N + ++PL R MS A+T ++L+Y YV+DIL+RR P+RAEHL A K+G++V+GGAL DP D GV +F +DK + E FA +D YV LV + +R+WTVV
Sbjct: 4 NGISKVFSRPLSPLSRAMS---AVTDKKYYILRYEYVHDILNRRGPYRAEHLERAVTAKKDGNVVMGGALVDPPDAGVFIFNVSDKKIIEKFATSDPYVLNNLVTSYSIREWTVV 115
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|693499186|emb|CEF98724.1| (YCII-related [Ostreococcus tauri]) HSP 1 Score: 102.449 bits (254), Expect = 1.348e-24 Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0
Query: 68 QHKRVMSS-----AQAITPT-TLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFT--DKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
+H RV+ S A + P+ + WLL +YV ++ +RR P+R EHLAG + + +G V+ GAL DPVD GV VF D+SV FA DAYVK GLV W VR WTVV G+
Sbjct: 42 KHCRVVKSRSSAVAMSAAPSNSYWLLTLNYVENMAERRGPYREEHLAGASASHAKGECVMAGALTDPVDTGVFVFKNCDESVVRAFAENDAYVKNGLVTSWNVRPWTVVVGN 153
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|1199292297|gb|OUS47385.1| (hypothetical protein BE221DRAFT_72232 [Ostreococcus tauri]) HSP 1 Score: 99.7525 bits (247), Expect = 3.391e-24 Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
Query: 77 QAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFT--DKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
A + WLL +YV ++ +RR P+R EHLAG + + +G V+ GAL DPVD GV VF D+SV FA DAYVK GLV W VR WTVV G+
Sbjct: 2 SAAPSNSYWLLTLNYVENMAERRGPYREEHLAGASASHAKGECVMAGALTDPVDTGVFVFKNCDESVVRAFAENDAYVKNGLVTSWNVRPWTVVVGN 98
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|922859290|gb|KOO27323.1| (hypothetical protein Ctob_010138 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 102.834 bits (255), Expect = 8.793e-24 Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 71 RVMSSAQAITPTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGS 171
R +SS+ T L LL Y YV+D +++R+P+RA HL + G L+LGGALA+PVD GVL+FT + AE FA D YV G+V W VR+W+VV GS
Sbjct: 18 RALSSSAPPTVRPLHLLLYQYVDDAVEKRQPYRANHLGHARASIDRGELLLGGALANPVDGGVLIFTAGAAAERFAETDPYVLNGIVTSWTVREWSVVVGS 118
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|493316287|ref|WP_006273669.1| (hypothetical protein [Asticcacaulis biprosthecium] >gi|328841897|gb|EGF91467.1| yciI-like protein [Asticcacaulis biprosthecum C19]) HSP 1 Score: 97.0561 bits (240), Expect = 4.298e-23 Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 0
Query: 85 WLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVF--TDKSVAENFAAADAYVKAGLVKVWQVRQWTVVAGSK 172
+LL Y +V+D LDRR R HL + AA G LVLGGALA+P D GVL+F D SVAENFA +D YV GLV+ W+VR+WT V G
Sbjct: 4 FLLFYDFVDDYLDRRGEFRGVHLDLASAAADRGDLVLGGALANPADGGVLLFLGADSSVAENFAQSDPYVVNGLVRSWKVREWTTVVGDS 93
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|493521877|ref|WP_006475974.1| (MULTISPECIES: hypothetical protein [Burkholderia] >gi|105898264|gb|ABF81222.1| YCII-related protein [Burkholderia cenocepacia AU 1054] >gi|116647830|gb|ABK08471.1| YCII-related protein [Burkholderia cenocepacia HI2424] >gi|124870170|gb|EAY61886.1| hypothetical protein BCPG_00092 [Burkholderia cenocepacia PC184] >gi|169816319|gb|ACA90902.1| YCII-related [Burkholderia cenocepacia MC0-3] >gi|721516310|gb|KGY59747.1| hypothetical protein DK10_06690 [Burkholderia cenocepacia] >gi|923378110|gb|KOR20129.1| hypothetical protein ABW54_18350 [Burkholderia cenocepacia] >gi|1061598764|gb|AOJ21783.1| hypothetical protein WJ11_20555 [Burkholderia cenocepacia] >gi|1087459049|emb|SDR18823.1| hypothetical protein SAMN05443026_3185 [Burkholderia cenocepacia] >gi|1144540164|gb|ONV90365.1| hypothetical protein A8E89_15675 [Burkholderia cenocepacia] >gi|1144562543|gb|ONW12425.1| hypothetical protein A8E90_23805 [Burkholderia cenocepacia] >gi|1144570463|gb|ONW20206.1| hypothetical protein A8E94_05810 [Burkholderia cenocepacia] >gi|1144584814|gb|ONW34332.1| hypothetical protein A8E95_11475 [Burkholderia cenocepacia] >gi|1144590111|gb|ONW39546.1| hypothetical protein A8E93_19390 [Burkholderia cenocepacia] >gi|1144594145|gb|ONW43513.1| hypothetical protein A8E99_15315 [Burkholderia cenocepacia] >gi|1144597396|gb|ONW46710.1| hypothetical protein A8E92_20600 [Burkholderia cenocepacia] >gi|1144606105|gb|ONW55283.1| hypothetical protein A8E91_32065 [Burkholderia cenocepacia] >gi|1144610704|gb|ONW59818.1| hypothetical protein A8E98_23970 [Burkholderia cenocepacia] >gi|1144619831|gb|ONW68822.1| hypothetical protein A8E97_14810 [Burkholderia cenocepacia] >gi|1147477950|gb|AQQ26466.1| hypothetical protein A8E88_12755 [Burkholderia cenocepacia] >gi|1147484725|gb|AQQ32499.1| hypothetical protein A8E96_08685 [Burkholderia cenocepacia] >gi|1150394828|gb|AQT50143.1| hypothetical protein BHQ31_08930 [Burkholderia cenocepacia]) HSP 1 Score: 95.5153 bits (236), Expect = 1.616e-22 Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 85 WLLQYHYVNDILDRREPHRAEHLAGLTQAAKE-GSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
+ L Y V+D L RREP RAEHLA L QAA E G LVL GALADP D VLVF S AE+FA AD YV+ GLVK W+VR W VV G
Sbjct: 3 YQLIYELVDDYLSRREPFRAEHLA-LAQAATERGELVLAGALADPADQAVLVFEGDSPEAAESFARADPYVQNGLVKSWRVRPWRVVVG 90
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|981368956|ref|WP_059583421.1| (hypothetical protein [Burkholderia anthina] >gi|976497942|gb|KVD98669.1| hypothetical protein WS65_31020 [Burkholderia anthina] >gi|976814819|gb|KVH05907.1| hypothetical protein WS85_27365 [Burkholderia anthina] >gi|976821027|gb|KVH12004.1| hypothetical protein WS84_11100 [Burkholderia anthina] >gi|978389339|gb|KVM87480.1| hypothetical protein WT06_21160 [Burkholderia anthina] >gi|978466223|gb|KVN63230.1| hypothetical protein WT13_13455 [Burkholderia anthina] >gi|979568854|gb|KVX33646.1| hypothetical protein WT32_19565 [Burkholderia anthina] >gi|980471771|gb|KWH49974.1| hypothetical protein WT63_07300 [Burkholderia anthina] >gi|985248716|gb|KWZ35381.1| hypothetical protein WS64_07470 [Burkholderia anthina]) HSP 1 Score: 94.3597 bits (233), Expect = 3.376e-22 Identity = 55/87 (63.22%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 87 LQYHYVNDILDRREPHRAEHLAGLTQAAKE-GSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
L Y V+D L RREP RAEHLA L QAA E G LVL GALADP D VLVF S AE+FA AD YV+ GLVK W+VR W VV G
Sbjct: 5 LIYELVDDYLSRREPLRAEHLA-LAQAATERGELVLAGALADPADQAVLVFEGDSPEAAESFARADPYVQNGLVKSWRVRPWRVVVG 90
BLAST of EWM20419.1 vs. NCBI_GenBank
Match: gi|403074468|gb|AFR16048.1| (YciI-like protein [Burkholderia pseudomallei BPC006]) HSP 1 Score: 95.1301 bits (235), Expect = 3.665e-22 Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 0
Query: 81 PTTLWLLQYHYVNDILDRREPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKS--VAENFAAADAYVKAGLVKVWQVRQWTVVAG 170
P +LL Y V+D LDRR +RA+HLA A G L+L GALADP D VLVF S VAE FA AD YV GLVK W+VR WTVV G
Sbjct: 20 PFMYYLLTYELVDDYLDRRGAYRADHLALAKAATARGELLLAGALADPADEAVLVFDAPSPAVAEAFAQADPYVANGLVKRWRVRPWTVVTG 111 The following BLAST results are available for this feature:
BLAST of EWM20419.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|