rna10278, rna10278 (mRNA) Nannochloropsis gaditana

Overview
Namerna10278
Unique Namerna10278
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1797
Alignment locationKK037269.1:10028..11507 +

Link to JBrowse

Properties
Property NameValue
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100842g2.2210.mrna
Orig protein idgnl|cribi|Naga_100842g2.2210
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:10028..11507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100842g2gene9980Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10278rna10278-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20427.1cds10247Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10278 ID=rna10278|Name=rna10278|organism=Nannochloropsis gaditana|type=mRNA|length=1797bp
AGGTGGTGGGCGGCGTCCTCAACTGCACGGTGGCCGGGGTCGTGGGCTCC
TGGTGGTTCATTCCCAAGGCCGATCAGGCCAACGTCGTCACGGGTTCTTT
CACGCGCGCCGCAACCACCTCCCTGGGCTCGATCTGCTTTGGAGCGCTGG
TTGTGGCAGTTCTTGAGGCGATGAAGGTAAGCCCTTACCCTTCCTTTCTT
TCTCCCTCCCTCCCTTCCTCCCTTCCTCCATCCATCCCCCCCTCCCTCCT
GTGCGTTGTCCTCTCCCTGCCGCACCCCTCTCTTGGGACGAGGGCATGGG
TACCGCGCAGACGTTTCGGAGCAGGCGAGGCGTGCGTAGACAGAGAGCGT
GGTATTCACTTGGAAAGGCGTAGAACCTCGTGTGTTCACGACGCAGGTCT
TCTCATCCTCTCCCTCCCTCACTCCCTTCCCCCTTTCTCCCCTCCCCACG
CCCGCCGTCCCCCCCTCAGGCTATGGTCGAGAACGCGCGACAAGAGAGAG
ATAATGCTCTCAAGTGCCTTCTCGACTGCCTCATCTCCTGCCTGGATTCG
CTCGCCCAATACCTGAACCGGTGGGCTTACACCTACATCGGGATATATGG
CCACTCCTTCGTGGAAGCCGGGCACAAGGTATACAACCTCTTCGTCCGGC
GGGGACTCACGGCCCTTCTCAACGACAACTTGGTCGGCCGTGTCCTCTTC
TTAGGAGCCTTGATGGTGGGGCTCGTGACCTGCGGGTTGGGGGTCCTCCT
TGCCTTTATCCTGCAGCATTCCTACCTGAAAGACGTCGAGAACGCCCCTT
CCTTGCTGGGAGGAGCGGGTTTTGTGGTACGTCCCCTGGTCTCTCTGTTG
CCTCTCCCAAGTCTTTGGCGTGCATCATTGTATCCGAGTTATCGTCGTCG
CTACCATGTACCGTCAGTCCACCTCGCCTGTTCCCCATGTCTGGTTCTTG
CAACCCCCACCATCCTGACTTGCCATCCTCTCTCCACGAGCGCAATCTTG
GCCATCGCCCCCGCCCCACCCTCCCCCTCTCCCTTCTTTTCATCCTGCAG
GTGGGGTTTTTTGTGACGGACGTGATGATGAACGTGGTTTCCGCTGCTGT
GGCGGCCGTCCTGGTCTGCTTCTTGGAGGACTCCCAGGCCCTGGCTATCA
CCCACCCGGACTACCATTCTTACCTGGTGGCGGCGTGGGCCATGCGCTTC
CCCGACATCAATTGGTAGTCTTCCTTAGAGCTCCCTTTCGTTGCCCTTTC
TTCTTGGACGTAGGAAACGACGCGCATTCTCCTGCCTCTTTGAGTTTCCC
TTGAGTAGGCGAGGATGCTCTTTGAACGGCCAGGGGGGGGAGGAGCTGTC
CCTCAAGAATGGGGGGTTGGACGGGGAGTTGCAGGGAGCCATGCTATGTA
TATATACTCTCTCTAGCAAGTGGGTGAGGGGCCGACCACGGGCAGGGTGC
TTGGGCGGACGAGAATGAATACATGGGAGAGACGCGGGAGGATGAGGTGG
CTGGAAGGGGGGTATGACTGTGGGTATTCTCGCTATTCGCCCTATTTCCG
TGCGACCTCAGTCCTTCCCTCCTGTCCCCTGCCTTTCCTATGATGGCTCC
ACCCTCTCAGACATGTGAAAAAGAATGGAAAAAGAAAATAAAAAGCAACG
CCGTCTGCAGGTTTTCGCCTCAGTATGCATCGAGTCGTTAATTTGCTGTC
GATCGGGGCCACCAATGCGAGACCGTCCGGACTAAATGCATGCGCGGCCT
CCGGGCCCTCTTCCTGTGTCCTCTTTCACCTAGGCGTGGTGCTTTAT
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protein sequence of rna10278

>rna10278-protein ID=rna10278-protein|Name=rna10278|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAG
HKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHS
YLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALA
ITHPDYHSYLVAAWAMRFPDINW
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mRNA from alignment at KK037269.1:10028..11507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10278 ID=rna10278|Name=rna10278|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp|location=Sequence derived from alignment at KK037269.1:10028..11507+ (Nannochloropsis gaditana)
ctcaGGCTATGGTCGAGAACGCGCGACAAGAGAGAGATAATGCTCTCAAG
TGCCTTCTCGACTGCCTCATCTCCTGCCTGGATTCGCTCGCCCAATACCT
GAACCGGTGGGCTTACACCTACATCGGGATATATGGCCACTCCTTCGTGG
AAGCCGGGCACAAGGTAccgggagggcaggggggagggcggggagggggt
gatAGAAAGCAGGCAGGGCGGAAGGCCTGGACCTCCGTTCTTCCTCGTGT
GTCGCTCGCCTGctccattcccctccctccctccctccctccctccctcc
tttctcactAGGTATACAACCTCTTCGTCCGGCGGGGACTCACGGCCCTT
CTCAACGACAACTTGGTCGGCCGTGTCCTCTTCTTAGGAGCCTTGATGGT
GGGGCTCGTGACCTGCGGGTTGGgggtcctccttgcctttaTCCTGCAGC
ATTCCTACCTGAAAGACGTCGAGAacgccccttccttgctgGGAGGAGCG
GGTTTTGTGGTACGTCCCCTGGTCTCTCTGTTGCCTCTCCCAAGTCTTTG
GCGTGCATCATTGTATCCGAGTTATCGTCGTCGCTACCATGTACCGTCAG
TCCACCTCGCCTGTTCCCCATGTCTGGTTCTTGCAACCCCCACCATCCTG
ACTTGCCATCCTCTCTCCACGAGCGCAATCTTGgccatcgcccccgcccc
accctccccctctcccttcttttcatCCTGCAGGTGGGGTTTTTTGTGAC
GGACGTGATGATGAACGTGGTTTCCGCTGCTGTGGCGGCCGTCCTGGTCT
GCTTCTTGGAGGACTCCCAGGCCCTGGCTATCACCCACCCGGACTACCAT
TCTTACCTGGTGGCGGCGTGGGCCATGCGCTTCCCCGACATCAATTGGTA
GTCTTCCTTAGAGCTCCCTTTCGttgccctttcttcttggacGTAGGAAA
CGACGCGCATTCTCCTGCCTCTTTGAGTTTCCCTTGAGTAGGCGAGGATG
CTCTTTGAacggccaggggggggaggagctgtcCCTCAAGAATGGGGGGT
TGGACGGGGAGTTGCAGGGAGCCATGCTATGTATATATACTCTCTCTAGC
AAGTGGGTGAGGGGCCGACCACGGGCAGGGTGCTTGGGCGGACGAGAATG
AATACATGGGAGAGACGcgggaggatgaggtggCTGGAAGGGGGGTATGA
CTGTGGGTATTCTCGCTATTCGCCCTATTTCCGTGCGACCTcagtccttc
cctcctgtcccctgcctttcctaTGATGGCTCCACCCTCTCAGACATGTG
AAAAAgaatggaaaaagaaaataaaaagCAACGCCGTCTGCAGGTTTTCG
CCTCAGTATGCATCGAGTCGTTAATTTGCTGTCGATCGGGGCCACCAATG
CGAGACCGTCCGGACTAAATGCATGCGCGGCCTCCGGGCCCTCTTCCTGT
GTCCTCTTTCACCTAGGCGTGGTGCTTTAT
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Coding sequence (CDS) from alignment at KK037269.1:10028..11507+

>rna10278 ID=rna10278|Name=rna10278|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at KK037269.1:10028..11507+ (Nannochloropsis gaditana)
ATGGTCGAGAACGCGCGACAAGAGAGAGATAATGCTCTCAAGTGCCTTCT
CGACTGCCTCATCTCCTGCCTGGATTCGCTCGCCCAATACCTGAACCGGT
GGGCTTACACCTACATCGGGATATATGGCCACTCCTTCGTGGAAGCCGGG
CACAAGGTATACAACCTCTTCGTCCGGCGGGGACTCACGGCCCTTCTCAA
CGACAACTTGGTCGGCCGTGTCCTCTTCTTAGGAGCCTTGATGGTGGGGC
TCGTGACCTGCGGGTTGGgggtcctccttgcctttaTCCTGCAGCATTCC
TACCTGAAAGACGTCGAGAacgccccttccttgctgGGAGGAGCGGGTTT
TGTGGTGGGGTTTTTTGTGACGGACGTGATGATGAACGTGGTTTCCGCTG
CTGTGGCGGCCGTCCTGGTCTGCTTCTTGGAGGACTCCCAGGCCCTGGCT
ATCACCCACCCGGACTACCATTCTTACCTGGTGGCGGCGTGGGCCATGCG
CTTCCCCGACATCAATTGGTAGATGGTCGAGAACGCGCGACAAGAGAGAG
ATAATGCTCTCAAGTGCCTTCTCGACTGCCTCATCTCCTGCCTGGATTCG
CTCGCCCAATACCTGAACCGGTGGGCTTACACCTACATCGGGATATATGG
CCACTCCTTCGTGGAAGCCGGGCACAAGGTATACAACCTCTTCGTCCGGC
GGGGACTCACGGCCCTTCTCAACGACAACTTGGTCGGCCGTGTCCTCTTC
TTAGGAGCCTTGATGGTGGGGCTCGTGACCTGCGGGTTGGgggtcctcct
tgcctttaTCCTGCAGCATTCCTACCTGAAAGACGTCGAGAacgcccctt
ccttgctgGGAGGAGCGGGTTTTGTGGTGGGGTTTTTTGTGACGGACGTG
ATGATGAACGTGGTTTCCGCTGCTGTGGCGGCCGTCCTGGTCTGCTTCTT
GGAGGACTCCCAGGCCCTGGCTATCACCCACCCGGACTACCATTCTTACC
TGGTGGCGGCGTGGGCCATGCGCTTCCCCGACATCAATTGGTAGATGGTC
GAGAACGCGCGACAAGAGAGAGATAATGCTCTCAAGTGCCTTCTCGACTG
CCTCATCTCCTGCCTGGATTCGCTCGCCCAATACCTGAACCGGTGGGCTT
ACACCTACATCGGGATATATGGCCACTCCTTCGTGGAAGCCGGGCACAAG
GTATACAACCTCTTCGTCCGGCGGGGACTCACGGCCCTTCTCAACGACAA
CTTGGTCGGCCGTGTCCTCTTCTTAGGAGCCTTGATGGTGGGGCTCGTGA
CCTGCGGGTTGGgggtcctccttgcctttaTCCTGCAGCATTCCTACCTG
AAAGACGTCGAGAacgccccttccttgctgGGAGGAGCGGGTTTTGTGGT
GGGGTTTTTTGTGACGGACGTGATGATGAACGTGGTTTCCGCTGCTGTGG
CGGCCGTCCTGGTCTGCTTCTTGGAGGACTCCCAGGCCCTGGCTATCACC
CACCCGGACTACCATTCTTACCTGGTGGCGGCGTGGGCCATGCGCTTCCC
CGACATCAATTGGTAG
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Synonyms
Publications