EWM20427.1, cds10247 (CDS) Nannochloropsis gaditana

Overview
NameEWM20427.1
Unique Namecds10247
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:10036..10191 +
Alignment locationKK037269.1:10339..10536 +
Alignment locationKK037269.1:10761..10928 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20427.1
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100842g2.2210.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:10036..10191 +
KK037269.1supercontigKK037269.1:10339..10536 +
KK037269.1supercontigKK037269.1:10761..10928 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|585100024|gb|EWM20427.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 352.058 bits (902), Expect = 8.487e-123
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173
            MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW
Sbjct:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|585100023|gb|EWM20426.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 244.202 bits (622), Expect = 7.517e-80
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVT 124
            MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVV   V+
Sbjct:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVS 124          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|375267598|emb|CCD28249.1| (choline transporter-like, partial [Plasmopara viticola])

HSP 1 Score: 142.51 bits (358), Expect = 2.965e-39
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQE  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G ++A            N+ + L   G VVG  V    + V+ ++VA + VCF ED  A  ++HP+ ++ LV  W   +P++
Sbjct:   66 LAENSRQE-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGAIIAETFD---ALSFHNSTAFLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQLSHPELYAPLVQEWHNLYPEV 232          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|567954505|gb|ETK80138.1| (hypothetical protein L915_14113 [Phytophthora parasitica] >gi|568042702|gb|ETM40023.1| hypothetical protein L914_13920 [Phytophthora parasitica])

HSP 1 Score: 142.895 bits (359), Expect = 6.597e-39
Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P++
Sbjct:  110 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 276          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|695373907|ref|XP_009515161.1| (hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae] >gi|348688072|gb|EGZ27886.1| hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae])

HSP 1 Score: 143.28 bits (360), Expect = 8.984e-38
Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + E+ RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   GFV+G  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P+I
Sbjct:  255 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFQLFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVTFQNSTAFLAILGFVIGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEI 421          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|301116938|ref|XP_002906197.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107546|gb|EEY65598.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 143.28 bits (360), Expect = 1.128e-37
Identity = 70/171 (40.94%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + E+ RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + + +   +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HPD ++ LV  W   +P+I
Sbjct:  263 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDVVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQHSHPDLYAPLVQEWHNLYPEI 429          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|566017111|gb|ETI40022.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566017112|gb|ETI40023.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567983164|gb|ETL33563.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567983165|gb|ETL33564.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568012669|gb|ETL86846.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568012670|gb|ETL86847.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570320780|gb|ETO68728.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570320781|gb|ETO68729.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570944634|gb|ETP09891.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570944635|gb|ETP09892.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570976085|gb|ETP37958.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570976086|gb|ETP37959.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 142.895 bits (359), Expect = 1.568e-37
Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P++
Sbjct:  255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 421          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|566017110|gb|ETI40021.1| (hypothetical protein F443_14464 [Phytophthora parasitica P1569] >gi|567983163|gb|ETL33562.1| hypothetical protein L916_14007 [Phytophthora parasitica] >gi|568012668|gb|ETL86845.1| hypothetical protein L917_13797 [Phytophthora parasitica] >gi|570320779|gb|ETO68727.1| hypothetical protein F444_14462 [Phytophthora parasitica P1976] >gi|570944633|gb|ETP09890.1| hypothetical protein F441_14342 [Phytophthora parasitica CJ01A1] >gi|570976084|gb|ETP37957.1| hypothetical protein F442_14306 [Phytophthora parasitica P10297])

HSP 1 Score: 143.28 bits (360), Expect = 2.622e-37
Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P++
Sbjct:  309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|675202463|ref|XP_008910116.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|675202465|ref|XP_008910117.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568089882|gb|ETN04722.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568089883|gb|ETN04723.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310])

HSP 1 Score: 142.124 bits (357), Expect = 3.070e-37
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G G L+A   + +     +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P++
Sbjct:  255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 421          
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|675202461|ref|XP_008910115.1| (hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310] >gi|568089881|gb|ETN04721.1| hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310])

HSP 1 Score: 142.124 bits (357), Expect = 6.471e-37
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 0
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G G L+A   + +     +N+ + L   G VVG  V    + V+ ++VA + VCF ED  A   +HP+ ++ LV  W   +P++
Sbjct:  309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475          
The following BLAST results are available for this feature:
BLAST of EWM20427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100024|gb|EWM20427.1|8.487e-123100.00Choline transporter [Nannochloropsis gaditana][more]
gi|585100023|gb|EWM20426.1|7.517e-8096.77Choline transporter [Nannochloropsis gaditana][more]
gi|375267598|emb|CCD28249.1|2.965e-3940.35choline transporter-like, partial [Plasmopara viti... [more]
gi|567954505|gb|ETK80138.1|6.597e-3940.35hypothetical protein L915_14113 [Phytophthora para... [more]
gi|695373907|ref|XP_009515161.1|8.984e-3840.35hypothetical protein PHYSODRAFT_474776 [Phytophtho... [more]
gi|301116938|ref|XP_002906197.1|1.128e-3740.94conserved hypothetical protein [Phytophthora infes... [more]
gi|566017111|gb|ETI40022.1|1.568e-3740.35hypothetical protein, variant 1 [Phytophthora para... [more]
gi|566017110|gb|ETI40021.1|2.622e-3740.35hypothetical protein F443_14464 [Phytophthora para... [more]
gi|675202463|ref|XP_008910116.1|3.070e-3740.35hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675202461|ref|XP_008910115.1|6.471e-3740.35hypothetical protein PPTG_14520 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10278rna10278Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications