EWM20427.1, cds10247 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|585100024|gb|EWM20427.1| (Choline transporter [Nannochloropsis gaditana]) HSP 1 Score: 352.058 bits (902), Expect = 8.487e-123 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173
MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW
Sbjct: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|585100023|gb|EWM20426.1| (Choline transporter [Nannochloropsis gaditana]) HSP 1 Score: 244.202 bits (622), Expect = 7.517e-80 Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVT 124
MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVV V+
Sbjct: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVS 124
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|375267598|emb|CCD28249.1| (choline transporter-like, partial [Plasmopara viticola]) HSP 1 Score: 142.51 bits (358), Expect = 2.965e-39 Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQE +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G ++A N+ + L G VVG V + V+ ++VA + VCF ED A ++HP+ ++ LV W +P++
Sbjct: 66 LAENSRQE-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGAIIAETFD---ALSFHNSTAFLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQLSHPELYAPLVQEWHNLYPEV 232
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|567954505|gb|ETK80138.1| (hypothetical protein L915_14113 [Phytophthora parasitica] >gi|568042702|gb|ETM40023.1| hypothetical protein L914_13920 [Phytophthora parasitica]) HSP 1 Score: 142.895 bits (359), Expect = 6.597e-39 Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G L+A + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HP+ ++ LV W +P++
Sbjct: 110 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 276
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|695373907|ref|XP_009515161.1| (hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae] >gi|348688072|gb|EGZ27886.1| hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae]) HSP 1 Score: 143.28 bits (360), Expect = 8.984e-38 Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ E+ RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G L+A + + +N+ + L GFV+G V + V+ ++VA + VCF ED A +HP+ ++ LV W +P+I
Sbjct: 255 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFQLFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVTFQNSTAFLAILGFVIGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEI 421
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|301116938|ref|XP_002906197.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107546|gb|EEY65598.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 143.28 bits (360), Expect = 1.128e-37 Identity = 70/171 (40.94%), Postives = 106/171 (61.99%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ E+ RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G L+A + + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HPD ++ LV W +P+I
Sbjct: 263 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDVVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQHSHPDLYAPLVQEWHNLYPEI 429
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|566017111|gb|ETI40022.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566017112|gb|ETI40023.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567983164|gb|ETL33563.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567983165|gb|ETL33564.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568012669|gb|ETL86846.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568012670|gb|ETL86847.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570320780|gb|ETO68728.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570320781|gb|ETO68729.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570944634|gb|ETP09891.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570944635|gb|ETP09892.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570976085|gb|ETP37958.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570976086|gb|ETP37959.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 142.895 bits (359), Expect = 1.568e-37 Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G L+A + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HP+ ++ LV W +P++
Sbjct: 255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 421
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|566017110|gb|ETI40021.1| (hypothetical protein F443_14464 [Phytophthora parasitica P1569] >gi|567983163|gb|ETL33562.1| hypothetical protein L916_14007 [Phytophthora parasitica] >gi|568012668|gb|ETL86845.1| hypothetical protein L917_13797 [Phytophthora parasitica] >gi|570320779|gb|ETO68727.1| hypothetical protein F444_14462 [Phytophthora parasitica P1976] >gi|570944633|gb|ETP09890.1| hypothetical protein F441_14342 [Phytophthora parasitica CJ01A1] >gi|570976084|gb|ETP37957.1| hypothetical protein F442_14306 [Phytophthora parasitica P10297]) HSP 1 Score: 143.28 bits (360), Expect = 2.622e-37 Identity = 69/171 (40.35%), Postives = 106/171 (61.99%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G+G L+A + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HP+ ++ LV W +P++
Sbjct: 309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|675202463|ref|XP_008910116.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|675202465|ref|XP_008910117.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568089882|gb|ETN04722.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568089883|gb|ETN04723.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310]) HSP 1 Score: 142.124 bits (357), Expect = 3.070e-37 Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G G L+A + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HP+ ++ LV W +P++
Sbjct: 255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 421
BLAST of EWM20427.1 vs. NCBI_GenBank
Match: gi|675202461|ref|XP_008910115.1| (hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310] >gi|568089881|gb|ETN04721.1| hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310]) HSP 1 Score: 142.124 bits (357), Expect = 6.471e-37 Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDI 171
+ EN+RQ+ +AL C +C++ CL SL +Y NRWAY Y+GIYG+ F +AG V+ LF +RG A++ND+L+G VL AL VGL+ G G L+A + + +N+ + L G VVG V + V+ ++VA + VCF ED A +HP+ ++ LV W +P++
Sbjct: 309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475 The following BLAST results are available for this feature:
BLAST of EWM20427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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