rna10272, rna10272 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10272
Unique Name	rna10272
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1718
Alignment location	KK037269.1:997..3323 +

Link to JBrowse

Properties


Property Name	Value
Product	cyclin-dependent kinases regulatory subunit
Orig transcript id	gnl\|cribi\|Naga_100743g2.1103.mrna
Orig protein id	gnl\|cribi\|Naga_100743g2.1103
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037269.1	supercontig	KK037269.1:997..3323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100743g2	gene9975	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10272	rna10272-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20432.1	cds10241	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037269.1:997..3323+
coding sequence from alignment at KK037269.1:997..3323+

mRNA sequence

>rna10272 ID=rna10272|Name=rna10272|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp
GCGCTGCTGCCGTCGAGCATTGAATTGTCTTTCTCGAACCCAGAAACACT
AGTCCATCAGTTGGCATCTTTTATTGCAAGGCCATCTCTGTGTTACATGC
TTCTCGCGTCTATGTGGCGAATTACCTGGGCTCTCGCACATTGTTGGTTT
GTGCACGTGACATGAGCTGGTAAGTTGGTGGGGGTGAACAAAGTGGACGC
ACCGCTCGTGACGAGGGCGAGATGTTGCGGTATTCTGCCAGTAATTATGG
CATGTAATATCACTCTCTTGTCAATGAATGTACAAATGAATGAGAAAATG
GGTGACACTGGTACATGTAAGCAAGGGTGGCTTGAGCTTTTGGCAGCTTG
CCTGCATTAAAGACAGGCATAATCAAATCGCAGACGGTCATCGACCCCAC
CTTTCAACCATGTCGCAACCCTTTCGTGCCGAAGCAGAGCAGCAGCCAAT
CATTTTTATACGCAAAATGAAAGTGTGATACTAGGGGCTTCCAGATAGGA
AGGAGATGCGAGTCCGAAGGGCTCTCAACTCGACTGATATCGTAGAAAGG
TTTTTGGACGCGTACTCTCACAAGCATCGAACCTGGGGCGCCCTAAATTG
ATAATGAAATGACTCAAGGATCTCATCCTTCTCCATCCCTGTGTATTTTT
CCTCATGTCCAGGATTGTTGAAGACGGCGGCAGAGAAGGTGTCGGGCATC
CAGATAAAGAATACCGCCGACCCTACAGTGAAGGGCAAGCAGCAGCCACA
CTAAGGCGAAGAAGTGTGCCGTAGCCAACCTTTCGCAGTCATGGCCAGTC
GTATCGAGTATTCAGAGAAATACATGGACGATAATCACGAATACAGGCAC
GTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCCAAGCAGCGCTTGCT
GACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCCCGAGGTTGGC
AACACTACGCCATCCACAGGCCAGAGCCTCACATCCTGCTCTTCCGACGG
CCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCGATTTAGGGCAGAGT
CGGAGGGAATCGAGTGAAGGAGGATCGAGCGTTGATGGTGGTCAGAAACG
TCATTCCCGTGGCTCATACACGCTTCTGTTTCCGGTGCCTGAACACCACT
CCCCCTGTCCGTCTGGGACGCTTTCTCTCTGAACAGGTCAATGCGGAGCT
AGAGCGGGAGGCCAAGGAGAAGTATGCAGAAAGCATGAACGGGGCGGTGC
AACGGAAATAGGGACGAAAACAAAGATGTGTGAATCGAGCAGCGTGAGAT
GAAGAGGAGGTATGATATCTTGGTGGCTCATGGGGTAGGTGGTGATCTGC
TGCCAGAAAGCGGGGTGTACGAATAATCTGAAGGGAGCGAGGGCACTGTG
CTAGAAAAATGAGCGTGGAGCGGACCCTCGAAAGGTAAGAAGCAGGATGG
CAGCGTAGGCGAGGAAGAGGAGGGTTGCAAACATCCACAATACGATTGAG
TATGTCGTACCTGCTTTTATCAGGAGGCGCCTTGGGAGCACGAGTCCCGT
ATTCCCTCGGTCCAACTTAGGATGAAGGCGTGAAGGCACGAGGGAGGTCA
CTGAAAGCATTGAGTAGAATTTCTTGAAATTGACCACTGGGTTACAATTT
TCCTGCTTCCGAGGCGCCGAAATAGTGACCGTAACGAAAAAGAATCCAGT
CTTGCACCGCAAAATGTT

protein sequence of rna10272

>rna10272-protein ID=rna10272-protein|Name=rna10272|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQS
RGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGA
VQRK

mRNA from alignment at KK037269.1:997..3323+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10272 ID=rna10272|Name=rna10272|organism=Nannochloropsis gaditana|type=mRNA|length=2327bp|location=Sequence derived from alignment at KK037269.1:997..3323+ (Nannochloropsis gaditana)
GCGCTGCTGCCGTCGAGCATTGAATTGTCTTTCTCGAACCCAGAAACACT
AGTCCATCAGTTGGCATCTTTTATTGCAAGGCCATCTCTGTGTTACATGC
TTCTCGCGTCTATGTGGCGAATTACCTGGGCTCTCGCACATTGTTGGTTT
GTGCACGTGACATGAGCTGGTAAGTTGGTGGGGGTGAACAAAGTGGACGC
ACCGCTCGTGACGAGGGCGAGATGTTGCGGTATTCTGCCAGTAATTATGG
CATGTAATATCACTCTCTTGTCAATGAATGTACAAATGAATGAGAAAATG
GGTGACACTGGTACATGTAAGCAAGGGTGGCTTGAGCTTTTGGCAGCTTG
CCTGCATTAAAGACAGGCATAATCAAATCGCAGACGGTCATCGACCCCAC
CTTTCAACCATGTCGCAACCCTTTCGTGCCGAAGCAGAGCAGCAGCCAAT
CATTTTTATACGCAAAATGAAAGTGTGATACTAGGGGCTTCCAGATAGGA
AGGAGATGCGAGTCCGAAGGGCTCTCAACTCGACTGATATCGTAGAAAGG
TTTTTGGACGCGTACTCTCACAAGCATCGAACCTGGGGCGCCCTAAATTG
ATAATGAAATGACTCAAGGATCtcatccttctccatccctgtGTATTTTT
CCTCATGTCCAGGATTGTTGAAGACGGCGGCAGAGAAGGTGTCGGGCATC
CAGATAAAGAATACCGCCGACCCTACAGTGAAGGGCAAGGTAAAGAGACT
CGGTGACCTCCGCGACAAGCACTGGATGGATCTCACGAAGCCATCGCATA
AAACATGATTTTGCCAATCGTTGGTCGCCCTACTATTTTAATCTATGTAA
TCACCCATTTTTCAtttccagcagcagccacactAAGGCGAAGAAGTGTG
CCGTAGCCAACCTTTCGCAGTCATGGCCAGTCGTATCGAGTATTCAGAGA
AATACATGGACGATAATCACGAATACAGGCACGTCATCCTTCCCAAGGTT
CGTTTATATGCCCCAATCAATGCCTGCCTGTCTAGCTGCCCTCCCGCGTG
CTCGCCCTGTCGCCTATAGGGTCGAGCTTGATGCCGAGGGCTTGCCGCCT
CGTGACCCCAAATCCATCCGTACCCGAGACGGAACAGCGTGCATCGAAAG
CCCTTTTCTAGGAAGCGCTAGCCAGGCGTAGATCTGGCGTCAGAGCGACA
AGGAGAAACGGTCCTGGGTGTGGGTTGTGGGACGTCGGCGggtcgccccc
cctcccttagGCCTTGGTTGACAccacccccctctccttcctctcccatc
ctctccaGGAGATTGCCCGCTCTCTGCCCAAGCAGCGCTTGCTGACCGAG
TCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCCCGAGGTTGGCAACACTA
CGCCATCCACAGGTAAGCCTGATTTGTCCCCGGCTGGCTTTgtttcccgc
ccctccaggcTCCTGCCGCGGTCAGAGGCCCATTTCGTCCCCTTCGTCAA
GGGCACGAAGCCCTCTTTATTCTGGCGTATTCTTCCCCCTGTGGGGATTT
TtaatccctcccttcccccgtgtCCCAGGCCAGAGCCTCACATCCTGCTC
TTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCGATTTA
GGGCAGAGTCGGAGGGAATCGAGTGAAGGAGGATCGAGCGTTGATGGTGG
TCAGAAACGTCATTCCCGTGGCTCATACACGCTTCTGTTTCCGGTGCCTG
AACACCACTCCCCCTGTCCGTCTGGGACGCTTTCTCTCTGAACAGGTCAA
TGCGGAGCTAGAGCgggaggccaaggagaagTATGCAGAAAGCATGAACG
GGGCGGTGCAACGGAAATAGGGACGAAAACAAAGATGTGTGAATCGAGCA
GCGtgagatgaagaggaggtatGATATCTTGGTGGCTCATGGGGTAGGTG
GTGATCTGCTGCCAGAAAGCGGGGTGTACGAATAATctgaagggagcgag
ggcacTGTGCTAGAAAAATGAGCGTGGAGCGGACCCTCGAAAGGTAAGAA
GCAGGATGGCAGCgtaggcgaggaagaggagggttgCAAACATCCACAAT
ACGATTGAGTATGTCGTACCTGCTTTTATCAGGAGGCGCCTTGGGAGCAC
GAGTCCCGTATTCCCTCGGTCCAACTTAGGATGAAGGCGTGAAGGCACGA
GGGAGGTCACTGAAAGCATTGAGTAGAATTTCTTGAAATTGACCACTGGG
TTACAATTTTCCTGCTTCCGAGGCGCCGAAATAGTGACCGTAACGAAAAA
GAATCCAGTCTTGCACCGCAAAATGTT

Coding sequence (CDS) from alignment at KK037269.1:997..3323+

>rna10272 ID=rna10272|Name=rna10272|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at KK037269.1:997..3323+ (Nannochloropsis gaditana)
ATGGCCAGTCGTATCGAGTATTCAGAGAAATACATGGACGATAATCACGA
ATACAGGCACGTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCCAAGC
AGCGCTTGCTGACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCC
CGAGGTTGGCAACACTACGCCATCCACAGGCCAGAGCCTCACATCCTGCT
CTTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTCAATGCGG
AGCTAGAGCgggaggccaaggagaagTATGCAGAAAGCATGAACGGGGCG
GTGCAACGGAAATAGATGGCCAGTCGTATCGAGTATTCAGAGAAATACAT
GGACGATAATCACGAATACAGGCACGTCATCCTTCCCAAGGAGATTGCCC
GCTCTCTGCCCAAGCAGCGCTTGCTGACCGAGTCGGAGTGGCGAGGCATT
GGCGTCCAGCAGTCCCGAGGTTGGCAACACTACGCCATCCACAGGCCAGA
GCCTCACATCCTGCTCTTCCGACGGCCGTTGGGAACGGACCCTGTGACCG
GCAAGGTCAATGCGGAGCTAGAGCgggaggccaaggagaagTATGCAGAA
AGCATGAACGGGGCGGTGCAACGGAAATAGATGGCCAGTCGTATCGAGTA
TTCAGAGAAATACATGGACGATAATCACGAATACAGGCACGTCATCCTTC
CCAAGGAGATTGCCCGCTCTCTGCCCAAGCAGCGCTTGCTGACCGAGTCG
GAGTGGCGAGGCATTGGCGTCCAGCAGTCCCGAGGTTGGCAACACTACGC
CATCCACAGGCCAGAGCCTCACATCCTGCTCTTCCGACGGCCGTTGGGAA
CGGACCCTGTGACCGGCAAGGTCAATGCGGAGCTAGAGCgggaggccaag
gagaagTATGCAGAAAGCATGAACGGGGCGGTGCAACGGAAATAGATGGC
CAGTCGTATCGAGTATTCAGAGAAATACATGGACGATAATCACGAATACA
GGCACGTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCCAAGCAGCGC
TTGCTGACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCCCGAGG
TTGGCAACACTACGCCATCCACAGGCCAGAGCCTCACATCCTGCTCTTCC
GACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTCAATGCGGAGCTA
GAGCgggaggccaaggagaagTATGCAGAAAGCATGAACGGGGCGGTGCA
ACGGAAATAG

Synonyms

Publications