EWM20432.1, cds10241 (CDS) Nannochloropsis gaditana

Overview
NameEWM20432.1
Unique Namecds10241
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:1919..1993 +
Alignment locationKK037269.1:2305..2408 +
Alignment locationKK037269.1:2575..2635 +
Alignment locationKK037269.1:2792..2866 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20432.1
Productcyclin-dependent kinases regulatory subunit
Orig transcript idgnl|cribi|Naga_100743g2.1103.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:1919..1993 +
KK037269.1supercontigKK037269.1:2305..2408 +
KK037269.1supercontigKK037269.1:2575..2635 +
KK037269.1supercontigKK037269.1:2792..2866 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0007049cell cycle
Vocabulary: INTERPRO
TermDefinition
IPR000789Cyclin-dep_kinase_reg-sub
Homology
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|585100032|gb|EWM20432.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 216.468 bits (550), Expect = 2.446e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 104
            MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 104
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|553190449|ref|XP_005855194.1| (cyclin-dependent kinase regulatory subunit CKS1 [Nannochloropsis gaditana CCMP526] >gi|422293863|gb|EKU21163.1| cyclin-dependent kinase regulatory subunit CKS1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 191.43 bits (485), Expect = 9.780e-61
Identity = 103/153 (67.32%), Postives = 104/153 (67.97%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKE-------------------------------------------------IARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 104
            MASRIEYSEKYMDDNHEYRHVILPKE                                                 +ARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEALARHRSGVRATGRNGPGCGLWDVGGSPPLPYALVDPTPLSFLSHPLQELARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 153
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|585100033|gb|EWM20433.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 8.391e-54
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|669157910|ref|XP_008614517.1| (cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|813149475|ref|XP_012200384.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65] >gi|530733873|gb|EQC32115.1| cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|641534856|gb|KDO28786.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 167.933 bits (424), Expect = 3.844e-52
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQ 102
            M+SRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN+ LEREAKEKYA+ +    Q
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSILEREAKEKYAQDIGQGRQ 105
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|1173950110|gb|OQR98089.1| (cyclin-dependent kinase regulatory subunit CKS1 [Achlya hypogyna])

HSP 1 Score: 167.162 bits (422), Expect = 7.106e-52
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESM 97
            +ASRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN+ +EREAKEKYA  M
Sbjct:    5 IASRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSVMEREAKEKYAHDM 100
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|1173943955|gb|OQR92748.1| (cyclin-dependent kinase regulatory subunit [Thraustotheca clavata])

HSP 1 Score: 166.007 bits (419), Expect = 1.950e-51
Identity = 78/97 (80.41%), Postives = 89/97 (91.75%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESM 97
            ++SRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN+ LEREAK+KYA+ M
Sbjct:    5 ISSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSILEREAKDKYAQEM 100
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|953497712|emb|CEG40472.1| (cyclin-dependent kinase regulatory subunit 1 [Plasmopara halstedii])

HSP 1 Score: 165.236 bits (417), Expect = 4.473e-51
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMN 98
            M+SRIEYSEKY+DD HEYRHVILPKE+ R+LP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN E+E++AKEKYA+  N
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMQRNLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNLEMEKQAKEKYAKEFN 101
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|675181505|ref|XP_008899637.1| (cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|675181507|ref|XP_008899638.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|566031941|gb|ETI54852.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1569] >gi|566031942|gb|ETI54853.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1569] >gi|567969626|gb|ETK94708.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|567998027|gb|ETL48106.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568027238|gb|ETM01201.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057728|gb|ETM54381.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057729|gb|ETM54382.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica] >gi|568100303|gb|ETN15002.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|568100304|gb|ETN15003.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|570335713|gb|ETO83661.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1976] >gi|570335714|gb|ETO83662.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1976] >gi|570959713|gb|ETP24692.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica CJ01A1] >gi|570995917|gb|ETP52651.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P10297] >gi|570995918|gb|ETP52652.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P10297] >gi|970645146|gb|KUF85705.1| Cyclin-dependent kinases regulatory subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 164.851 bits (416), Expect = 5.571e-51
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMN 98
            ++SRIEYSEKY+DD HEYRHVILPKE+ RSLP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN E+E++AKEKYA+  N
Sbjct:    5 LSSRIEYSEKYVDDTHEYRHVILPKEMQRSLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNPEMEKQAKEKYAKEFN 101
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|698801660|ref|XP_009833859.1| (cyclin-dependent kinase regulatory subunit 1 [Aphanomyces astaci] >gi|574111451|gb|ETV76947.1| cyclin-dependent kinase regulatory subunit 1 [Aphanomyces astaci])

HSP 1 Score: 164.466 bits (415), Expect = 8.765e-51
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQ 102
            +A+RIEYSEKY+DD HEYRHVILPKE+ RSLP  RLL E+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN+ +EREAKEKYA+ M    Q
Sbjct:    5 IAARIEYSEKYVDDTHEYRHVILPKEMQRSLPD-RLLAEAEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSSMEREAKEKYAQDMGQVRQ 105
[Close]
BLAST of EWM20432.1 vs. NCBI_GenBank
Match: gi|673029636|ref|XP_008868779.1| (cyclin-dependent kinase regulatory subunit 1 [Aphanomyces invadans] >gi|574475174|gb|ETW02174.1| cyclin-dependent kinase regulatory subunit 1 [Aphanomyces invadans])

HSP 1 Score: 163.696 bits (413), Expect = 1.620e-50
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQ 102
            +A+RIEYSEKY+DD HEYRHV+LPKE+ RSLP  RLL E+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+VN+ +EREAKEKYA+ M    Q
Sbjct:    5 LAARIEYSEKYVDDTHEYRHVLLPKEMQRSLPD-RLLAETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSSMEREAKEKYAQEMGQVRQ 105
The following BLAST results are available for this feature:
BLAST of EWM20432.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100032|gb|EWM20432.1|2.446e-71100.00cyclin-dependent kinases regulatory subunit [Nanno... [more]
gi|553190449|ref|XP_005855194.1|9.780e-6167.32cyclin-dependent kinase regulatory subunit CKS1 [N... [more]
gi|585100033|gb|EWM20433.1|8.391e-54100.00cyclin-dependent kinases regulatory subunit [Nanno... [more]
gi|669157910|ref|XP_008614517.1|3.844e-5278.43cyclin-dependent kinase regulatory subunit CKS1 [S... [more]
gi|1173950110|gb|OQR98089.1|7.106e-5281.44cyclin-dependent kinase regulatory subunit CKS1 [A... [more]
gi|1173943955|gb|OQR92748.1|1.950e-5180.41cyclin-dependent kinase regulatory subunit [Thraus... [more]
gi|953497712|emb|CEG40472.1|4.473e-5177.55cyclin-dependent kinase regulatory subunit 1 [Plas... [more]
gi|675181505|ref|XP_008899637.1|5.571e-5177.55cyclin-dependent kinase regulatory subunit 1 [Phyt... [more]
gi|698801660|ref|XP_009833859.1|8.765e-5175.49cyclin-dependent kinase regulatory subunit 1 [Apha... [more]
gi|673029636|ref|XP_008868779.1|1.620e-5074.51cyclin-dependent kinase regulatory subunit 1 [Apha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10272rna10272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications