rna10268, rna10268 (mRNA) Nannochloropsis gaditana

Overview
Namerna10268
Unique Namerna10268
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length656
Alignment locationKK037268.1:37182..37779 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101165g1.538.mrna
Orig protein idgnl|cribi|Naga_101165g1.538
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:37182..37779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101165g1gene9971Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10268rna10268-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20436.1cds10237Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10268 ID=rna10268|Name=rna10268|organism=Nannochloropsis gaditana|type=mRNA|length=656bp
GGTTTGCCGGTCAAATAGGCATGGAGTTGGGGGAACGTGCGGCGGTAGGG
CGCTGAGGACGTTGTGACATGGTCTGGTCGACTTTGTGGGTGCATGGAGG
GGGAGAATGGTCGCGGGCATTACGATGCGATGTCCTGGCTTCACGCTCCT
GACCCGCGGCACCACGTCTCTCGTGATCTCAGGCCGTTTTTCCGTTCGAC
AGTCCATTGCTTAGTCAACAATCCAAGGCATCTACAATTGTCAATTCACG
CTTCGTCTCCATTGAAGCCCGATGTCCTTGTTGCATGTTAAGCCAACCAC
TAGGGAGCACCTTGCAGTCGTCCTCGCTTTCCGACACCTGCCGTTAAATT
CCCTCCCCCAATGCAGGGGACGCAGAGCTTATGAACCGAAAGAGACCGTG
GACTGTATTCGCATCGGCCTCCCATGTCTACCCGGCTTTGTCCATACTCT
GCGTCCTTCCCTTGGTCTCCTCCTTCTTCTTGCGCCTTCCATGCTCACCC
CCGGGAAGGGAGATAGCCCTTCCGTACGCCTCCATCTCCACCCCTGTCAC
TTCCAACTGGCAGCATCTGGACGCGTACGGAGAAATATTGAAAAAGGTGT
GGGGAGGGTGAGAGCGCCGTGCAACGACTCGGGGCCTTGGAGCGGTAAGA
CCCGGG
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protein sequence of rna10268

>rna10268-protein ID=rna10268-protein|Name=rna10268|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MGDSSVYITFIYTQQHHVRCSSQKGFSRAEAMKKLEGKGGGNETSSLGNR
RGRWRGRAEEKPQKIESRGKGERQGRNARACVGNERRCMEGKSGTGAPET
FVFKFFKCWNQRGTHACHLKGCLYFEGIFLPFVPTATRFLFNMYKHFVLA
FYPGSS
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mRNA from alignment at KK037268.1:37182..37779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10268 ID=rna10268|Name=rna10268|organism=Nannochloropsis gaditana|type=mRNA|length=598bp|location=Sequence derived from alignment at KK037268.1:37182..37779- (Nannochloropsis gaditana)
ATGGGGTTGGTGGACAGGGGGAGGGAGGGATAGATGAAGGAAGAGCTGTT
TATTTTTGAGTGGGAGGAGGGGTCTGACGAGTGTTGAAGAGATTCCAGTG
TCTATATCACATTTATTTATACCCAGCAACACCATGTTCGTTGTTCGTCA
CAGAAAGGCTTTTCTCGTGCGGAAGCGATGAAAAAGTTGGAGGGAAAGGG
TGGAGGGAACGAGACGTCATCTCTCGGAAACCGACGGGGGAGATGGAGAG
GAAGGGCGGAGGAGAAACCTCAGAAAATCGAGTCGAGGGGAAAGGGTGAA
AGACAGGGAAGAAACGCAAGAGCTTGCGTCGGAAATGAAAGGAGGTGCAT
GGAAGGGAAATCGGGAACTGGAGCCCCAGAAACCTTCGTCTTCAAATTTT
TTAAATGCTGGAATCAAAGGGGGACACGTTGAATGCAAGTTACTGCGTCG
TGGTAGCTTATATTGACTAGATGCATGCCATTTGAAGGGTTGCCTATATT
TTGAAGGGATTTTTCTCCCCTTTGTCCCTACGGCCACACGATTCCTCTTC
AATATGTATAAACATTTTGTCCTAGCATTTTACCCAGGGTCGTCCTGA
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Coding sequence (CDS) from alignment at KK037268.1:37182..37779-

>rna10268 ID=rna10268|Name=rna10268|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at KK037268.1:37182..37779- (Nannochloropsis gaditana)
ATGCATGCCATTTGAAGGGTTGCCTATATTTTGAAGGGATTTTTCTCCCC
TTTGTCCCTACGGCCACACGATTCCTCTTCAATATGTATAAACATTTTGT
CCTAGCATTTTACCCAGGGTCGTCCTGAAGATTCCAGTGTCTATATCACA
TTTATTTATACCCAGCAACACCATGTTCGTTGTTCGTCACAGAAAGGCTT
TTCTCGTGCGGAAGCGATGAAAAAGTTGGAGGGAAAGGGTGGAGGGAACG
AGACGTCATCTCTCGGAAACCGACGGGGGAGATGGAGAGGAAGGGCGGAG
GAGAAACCTCAGAAAATCGAGTCGAGGGGAAAGGGTGAAAGACAGGGAAG
AAACGCAAGAGCTTGCGTCGGAAATGAAAGGAGGTGCATGGAAGGGAAAT
CGGGAACTGGAGCCCCAGAAACCTTCGTCTTCAAATTTTTTAAATGCTGG
AATCAAAGGGGGACACATGGGATGCATGCCATTTGAAGGGTTGCCTATAT
TTTGAAGGGATTTTTCTCCCCTTTGTCCCTACGGCCACACGATTCCTCTT
CAATATGTATAAACATTTTGTCCTAGCATTTTACCCAGGGTCGTCCTGAA
GATTCCAGTGTCTATATCACATTTATTTATACCCAGCAACACCATGTTCG
TTGTTCGTCACAGAAAGGCTTTTCTCGTGCGGAAGCGATGAAAAAGTTGG
AGGGAAAGGGTGGAGGGAACGAGACGTCATCTCTCGGAAACCGACGGGGG
AGATGGAGAGGAAGGGCGGAGGAGAAACCTCAGAAAATCGAGTCGAGGGG
AAAGGGTGAAAGACAGGGAAGAAACGCAAGAGCTTGCGTCGGAAATGAAA
GGAGGTGCATGGAAGGGAAATCGGGAACTGGAGCCCCAGAAACCTTCGTC
TTCAAATTTTTTAAATGCTGGAATCAAAGGGGGACACATGGGATGCATGC
CATTTGAAGGGTTGCCTATATTTTGAAGGGATTTTTCTCCCCTTTGTCCC
TACGGCCACACGATTCCTCTTCAATATGTATAAACATTTTGTCCTAGCAT
TTTACCCAGGGTCGTCCTGAAGATTCCAGTGTCTATATCACATTTATTTA
TACCCAGCAACACCATGTTCGTTGTTCGTCACAGAAAGGCTTTTCTCGTG
CGGAAGCGATGAAAAAGTTGGAGGGAAAGGGTGGAGGGAACGAGACGTCA
TCTCTCGGAAACCGACGGGGGAGATGGAGAGGAAGGGCGGAGGAGAAACC
TCAGAAAATCGAGTCGAGGGGAAAGGGTGAAAGACAGGGAAGAAACGCAA
GAGCTTGCGTCGGAAATGAAAGGAGGTGCATGGAAGGGAAATCGGGAACT
GGAGCCCCAGAAACCTTCGTCTTCAAATTTTTTAAATGCTGGAATCAAAG
GGGGACACATGGG
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Synonyms
Publications