EWM20436.1, cds10237 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20436.1
Unique Name	cds10237
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037268.1:37775..37779 -
Alignment location	KK037268.1:37353..37690 -
Alignment location	KK037268.1:37182..37309 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20436.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101165g1.538.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037268.1	supercontig	KK037268.1:37775..37779 -
KK037268.1	supercontig	KK037268.1:37353..37690 -
KK037268.1	supercontig	KK037268.1:37182..37309 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20436.1 vs. NCBI_GenBank
Match: gi|585100046|gb|EWM20436.1| (hypothetical protein Naga_101165g1 [Nannochloropsis gaditana])

HSP 1 Score: 323.553 bits (828), Expect = 4.316e-112
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query:    1 MGDSSVYITFIYTQQHHVRCSSQKGFSRAEAMKKLEGKGGGNETSSLGNRRGRWRGRAEEKPQKIESRGKGERQGRNARACVGNERRCMEGKSGTGAPETFVFKFFKCWNQRGTHACHLKGCLYFEGIFLPFVPTATRFLFNMYKHFVLAFYPGSS 156
            MGDSSVYITFIYTQQHHVRCSSQKGFSRAEAMKKLEGKGGGNETSSLGNRRGRWRGRAEEKPQKIESRGKGERQGRNARACVGNERRCMEGKSGTGAPETFVFKFFKCWNQRGTHACHLKGCLYFEGIFLPFVPTATRFLFNMYKHFVLAFYPGSS
Sbjct:    1 MGDSSVYITFIYTQQHHVRCSSQKGFSRAEAMKKLEGKGGGNETSSLGNRRGRWRGRAEEKPQKIESRGKGERQGRNARACVGNERRCMEGKSGTGAPETFVFKFFKCWNQRGTHACHLKGCLYFEGIFLPFVPTATRFLFNMYKHFVLAFYPGSS 156

The following BLAST results are available for this feature:

BLAST of EWM20436.1 vs. NCBI_GenBank

BLAST of EWM20436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100046\|gb\|EWM20436.1\|	4.316e-112	100.00	hypothetical protein Naga_101165g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10268	rna10268	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications