rna1026, rna1026 (mRNA) Nannochloropsis gaditana

Overview
Namerna1026
Unique Namerna1026
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1230
Alignment locationCM002456.1:993894..994903 -

Link to JBrowse

Properties
Property NameValue
Producthistone-fold-containing protein
Orig transcript idgnl|cribi|Naga_100050g34.6867.mrna
Orig protein idgnl|cribi|Naga_100050g34.6867
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:993894..994903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g34gene989Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1026rna1026-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29644.1cds1025Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1026 ID=rna1026|Name=rna1026|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp
CCTCGATTAGACCCGGCCTACACGAGAAAGTACTTGGTTTGCACGGGTTG
TCTTTCAAAATGGATCTGCTCTAATCGTTGTCGGGACACCATGGGTCAAC
CTCCCCACCCCTACATCTCAGTGCAATGGAAGGCGACTGTCGGCCCATCG
CGACAAACGGCATGTTTAGGTTTTTAATCTACATGTGTATAGTAAAGATG
TAGCACACTTTGATGGTACCCTGCTTGAGGCAAAATACCCCCCACGCTGT
ATCTTTTACCCTCTTACTAAGCTAGCGTCATCACAGCTGTTCCGTCTCGG
ATGATGCACGGACACCTACAACCGCATGAGCATACAGAAACATACCCACA
TAAGCGCAATCAGACACATATTAACTTCTTCTCCATTTTGTCGCGACAGT
AATCCAGATGCTGCCGCGCGTCGTCTCTAATGCCTTCGGACGGGCTGGTC
CCAAATTGAGCCGGCACCTCACTTCATCGTCTCATGCACTCTCCGCGAGT
CGTAACTCCAATGCCGCGCTATTTATGGCCGCGACTACCTTCACATTATG
CCAACCAATAGCAATAGCTCACATGATGAGCACTTGCGCATCCAGGCCGC
CCGCAACGGCTGACTTGTGTGACGACCACGAGCACCGCCTGCAGGTTGCC
GACGGCAATGCTTTTCACTCTTTTGGACAGCATTCTTCGTTTTGTGGCGA
GATAGTCACCATCAAATGCTTTGAGAACAATCCATTGGTGCGAGCCACCC
TGAGTGAGCCCGGAGAGGGACGGGTGCTGGTGGTTGACGGAGGGGGTTCC
CTACGCCGAGCTTTGTTTGGTGATAACATTGCAGCGCTGGCGGTGAAGAA
CGGATGGGCGGGCGTCGTCATTTACGGCGCTATCCGAGACTCTGCTGTTA
TAAACACCATGCCCTTGGGAGTCAAAGCTCTGGGTACAAATCCTGTGAAA
AGTGCCAAGCAGCATCCAGGCGACAGAAACGTTGTGGTCACTTTTGCAGG
AGTCACCTTCAAGCCTGGACACTACGTGTACTCCGACTCTGACGGCATAA
TCGTGTCCGAGACCCCACTTCACCAGACGTGATCGACCATTCATCCTTGA
AGTAGAGAAGGGGTGAAAAGAAGGAGGAAGAGAAAGCACGGCGGGCGACC
TCGTATTGTCCGTAAACGGGAGTGGCCACACAGAAATAAAAGCTGTACCA
TAAATGAAAAAAACTGGAAAAACCATTTGC
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protein sequence of rna1026

>rna1026-protein ID=rna1026-protein|Name=rna1026|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKTKAKKSA
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mRNA from alignment at CM002456.1:993894..994903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1026 ID=rna1026|Name=rna1026|organism=Nannochloropsis gaditana|type=mRNA|length=1010bp|location=Sequence derived from alignment at CM002456.1:993894..994903- (Nannochloropsis gaditana)
TTTCGTGTTTGCTCTTTGCTTTCCTGCCTGTCATCTAAGAATACATGATG
CCTATGTGGTCTCAGTGCACTTTTGACATTTACTGCCTGGCTTTGAAGAC
TCCTCTGTCGCACCTGTCACCTTTTTCTTATACGTAGGGCGAACTTTTGT
TTCTGCCTGTCAAGTCAAATGTGATTCAGTTAATGCAGGTCTCAGGCCGC
TTACCCTTCCATGGTGTAACTAACCCTGAAGTAACCTTCGAACGGAATAC
GGAAGCTGTGCAAAGCCCAATGTTTTTAAAAACCGCATACATTTAACGAT
TGTGCCCTCCGATGTCCCCTTCAGCTCTCTAGCTATGAGGGGGTACATGG
TCCTCATGTGTTCGAAATCTGACCTTGTCTACTCTTCACACACAGAAAAC
CTCTTAACTACTCTCATCAACAATGGCTGGCAAAGGCAAAGGTGGCCGTG
GCTCCGGCAAGAAGGGTGTGTCCCGTTCCTCCAAGGCTGGTCTCCAGTTC
CCCGTAGGCCGTATCTCCCGCTTCCTCAAGAAGGGACGTTACGCGGCCCG
CGTCGGCTCTGGTGCCCCCGTGTACCTGGCTGCTGTCCTCGAGTATCTGA
CGGCTGAAATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAACAAGAAG
ACCCGCATCATCCCCCGCCACGTCCAGCTTGCTGTCCGCAACGACGAGGA
GCTCAACAAGCTTCTTGGCGGTGTGACCATCGCTTCCGGTGGTGTCCTCC
CCAACATCCACTCTGGTGGGTTGTCAGGTGGTCCTCACTTGTATATATAC
CATCCTATCTCATTGTGTTCCCTTCTTGCCATTCACCCTACACAGTCCTT
CTCCCCAAGACCAAGGCGAAGAAGTCGGCGTAAATCACCTACAACCCTTA
AAAAGACAACCATCAGAGGCCTTTTCAGGCCTCACTATGTTAAACATACC
GATCACCTGCTTTGTTTCGTTACTTTTCGTGTGAAGCTTGTTACCTGTAC
TTGTTCGATC
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Coding sequence (CDS) from alignment at CM002456.1:993894..994903-

>rna1026 ID=rna1026|Name=rna1026|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at CM002456.1:993894..994903- (Nannochloropsis gaditana)
TCCTTCTCCCCAAGACCAAGGCGAAGAAGTCGGCGTAAATGGCTGGCAAA
GGCAAAGGTGGCCGTGGCTCCGGCAAGAAGGGTGTGTCCCGTTCCTCCAA
GGCTGGTCTCCAGTTCCCCGTAGGCCGTATCTCCCGCTTCCTCAAGAAGG
GACGTTACGCGGCCCGCGTCGGCTCTGGTGCCCCCGTGTACCTGGCTGCT
GTCCTCGAGTATCTGACGGCTGAAATTCTCGAGCTGGCTGGAAACGCCGC
TCGCGACAACAAGAAGACCCGCATCATCCCCCGCCACGTCCAGCTTGCTG
TCCGCAACGACGAGGAGCTCAACAAGCTTCTTGGCGGTGTGACCATCGCT
TCCGGTGGTGTCCTCCCCAACATCCACTCTGTCCTTCTCCCCAAGACCAA
GGCGAAGAAGTCGGCGTAAATGGCTGGCAAAGGCAAAGGTGGCCGTGGCT
CCGGCAAGAAGGGTGTGTCCCGTTCCTCCAAGGCTGGTCTCCAGTTCCCC
GTAGGCCGTATCTCCCGCTTCCTCAAGAAGGGACGTTACGCGGCCCGCGT
CGGCTCTGGTGCCCCCGTGTACCTGGCTGCTGTCCTCGAGTATCTGACGG
CTGAAATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAACAAGAAGACC
CGCATCATCCCCCGCCACGTCCAGCTTGCTGTCCGCAACGACGAGGAGCT
CAACAAGCTTCTTGGCGGTGTGACCATCGCTTCCGGTGGTGTCCTCCCCA
ACATCCACTCTG
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Synonyms
Publications