EWM29644.1, cds1025 (CDS) Nannochloropsis gaditana

Overview
NameEWM29644.1
Unique Namecds1025
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:994139..994481 -
Alignment locationCM002456.1:994021..994058 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29644.1
Producthistone-fold-containing protein
Orig transcript idgnl|cribi|Naga_100050g34.6867.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:994139..994481 -
CM002456.1supercontigCM002456.1:994021..994058 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0040029regulation of gene expression, epigenetic
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR002119Histone_H2A
Homology
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|585112216|gb|EWM29644.1| (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 246.514 bits (628), Expect = 1.333e-82
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
            MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA
Sbjct:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|552812127|ref|XP_005843638.1| (hypothetical protein CHLNCDRAFT_54972 [Chlorella variabilis] >gi|552812170|ref|XP_005843647.1| hypothetical protein CHLNCDRAFT_54989 [Chlorella variabilis] >gi|307103275|gb|EFN51536.1| hypothetical protein CHLNCDRAFT_54972 [Chlorella variabilis] >gi|307103284|gb|EFN51545.1| hypothetical protein CHLNCDRAFT_54989 [Chlorella variabilis])

HSP 1 Score: 208.379 bits (529), Expect = 2.101e-67
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKS 125
            M+G+GKG + SGKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KK+
Sbjct:    1 MSGRGKG-KTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKT 124
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|552834270|ref|XP_005848689.1| (hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis] >gi|307108347|gb|EFN56587.1| hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis])

HSP 1 Score: 208.379 bits (529), Expect = 2.316e-67
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
            M+G+GKG + SGKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KK A
Sbjct:    1 MSGRGKG-KTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKGA 125
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|552810039|ref|XP_005843094.1| (hypothetical protein CHLNCDRAFT_28450 [Chlorella variabilis] >gi|552812430|ref|XP_005843702.1| hypothetical protein CHLNCDRAFT_27894 [Chlorella variabilis] >gi|307102724|gb|EFN50992.1| hypothetical protein CHLNCDRAFT_28450 [Chlorella variabilis] >gi|307103339|gb|EFN51600.1| hypothetical protein CHLNCDRAFT_27894 [Chlorella variabilis])

HSP 1 Score: 207.994 bits (528), Expect = 2.919e-67
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKS 125
            M+G+GKG + SGKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KK+
Sbjct:    1 MSGRGKG-KTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKA 124
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|545355734|ref|XP_005643643.1| (histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|545355766|ref|XP_005643658.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|545355798|ref|XP_005643674.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|545366575|ref|XP_005648175.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245606|gb|EIE19099.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245621|gb|EIE19114.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245637|gb|EIE19130.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384250151|gb|EIE23631.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 206.838 bits (525), Expect = 6.876e-67
Identity = 103/124 (83.06%), Postives = 115/124 (92.74%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 124
            M+G+GKG   + KK VS+S+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AEILELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIASGGVLPNIHSVLLPK  AKK
Sbjct:    1 MSGRGKGK--TAKKSVSKSTKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLSGVTIASGGVLPNIHSVLLPKKTAKK 122
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|585101826|gb|EWM21571.1| (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 206.838 bits (525), Expect = 9.949e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:   16 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLP 118
            VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLP
Sbjct:   17 VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLP 119
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|545362336|ref|XP_005646408.1| (histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|545362343|ref|XP_005646411.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384248380|gb|EIE21864.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169] >gi|384248383|gb|EIE21867.1| histone-fold-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 206.068 bits (523), Expect = 1.139e-66
Identity = 102/124 (82.26%), Postives = 115/124 (92.74%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 124
            M+G+GKG   + KK VS+S+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AEILELAGNAARDNKKTRI+PRH+QLAVRNDEEL+KLL GVTIASGGVLPNIHSVLLPK  AKK
Sbjct:    1 MSGRGKGK--TAKKSVSKSTKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLSGVTIASGGVLPNIHSVLLPKKTAKK 122
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|1173949718|gb|OQR97724.1| (histone H2A type 1 [Achlya hypogyna])

HSP 1 Score: 205.297 bits (521), Expect = 5.436e-66
Identity = 102/124 (82.26%), Postives = 112/124 (90.32%), Query Frame = 0 
Query:    1 MAGKGK--GGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKA 122
            M+GKGK  GGRG+  K  SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK  A
Sbjct:    1 MSGKGKATGGRGAKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTA 124
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|260801577|ref|XP_002595672.1| (hypothetical protein BRAFLDRAFT_64806 [Branchiostoma floridae] >gi|260801619|ref|XP_002595693.1| hypothetical protein BRAFLDRAFT_64826 [Branchiostoma floridae] >gi|1126164108|ref|XP_019644828.1| PREDICTED: histone H2A-like [Branchiostoma belcheri] >gi|1126164138|ref|XP_019644982.1| PREDICTED: histone H2A-like [Branchiostoma belcheri] >gi|229280919|gb|EEN51684.1| hypothetical protein BRAFLDRAFT_64806 [Branchiostoma floridae] >gi|229280940|gb|EEN51705.1| hypothetical protein BRAFLDRAFT_64826 [Branchiostoma floridae])

HSP 1 Score: 204.527 bits (519), Expect = 5.463e-66
Identity = 103/126 (81.75%), Postives = 112/126 (88.89%), Query Frame = 0 
Query:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
            M+G+GKGG+   K   SRSS+AGLQFPVGR+ RFL+KG YA RVG+GAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLL GVTIA GGVLPNIH+VLLPK  A KSA
Sbjct:    1 MSGRGKGGKARAK-AKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKKTASKSA 125
[Close]
BLAST of EWM29644.1 vs. NCBI_GenBank
Match: gi|669148812|ref|XP_008609968.1| (histone H2A [Saprolegnia diclina VS20] >gi|669148828|ref|XP_008609976.1| histone H2A [Saprolegnia diclina VS20] >gi|530738305|gb|EQC36547.1| histone H2A [Saprolegnia diclina VS20] >gi|530738313|gb|EQC36555.1| histone H2A [Saprolegnia diclina VS20])

HSP 1 Score: 204.912 bits (520), Expect = 7.721e-66
Identity = 102/124 (82.26%), Postives = 112/124 (90.32%), Query Frame = 0 
Query:    1 MAGKGK--GGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKA 122
            M+GKGK  GGRG+  K  SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK  A
Sbjct:    1 MSGKGKATGGRGAKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTA 124
The following BLAST results are available for this feature:
BLAST of EWM29644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112216|gb|EWM29644.1|1.333e-82100.00histone-fold-containing protein [Nannochloropsis g... [more]
gi|552812127|ref|XP_005843638.1|2.101e-6782.40hypothetical protein CHLNCDRAFT_54972 [Chlorella v... [more]
gi|552834270|ref|XP_005848689.1|2.316e-6782.54hypothetical protein CHLNCDRAFT_21904 [Chlorella v... [more]
gi|552810039|ref|XP_005843094.1|2.919e-6782.40hypothetical protein CHLNCDRAFT_28450 [Chlorella v... [more]
gi|545355734|ref|XP_005643643.1|6.876e-6783.06histone-fold-containing protein [Coccomyxa subelli... [more]
gi|585101826|gb|EWM21571.1|9.949e-67100.00histone-fold-containing protein [Nannochloropsis g... [more]
gi|545362336|ref|XP_005646408.1|1.139e-6682.26histone-fold-containing protein [Coccomyxa subelli... [more]
gi|1173949718|gb|OQR97724.1|5.436e-6682.26histone H2A type 1 [Achlya hypogyna][more]
gi|260801577|ref|XP_002595672.1|5.463e-6681.75hypothetical protein BRAFLDRAFT_64806 [Branchiosto... [more]
gi|669148812|ref|XP_008609968.1|7.721e-6682.26histone H2A [Saprolegnia diclina VS20] >gi|6691488... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1026rna1026Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications