rna10254, rna10254 (mRNA) Nannochloropsis gaditana

Overview
Namerna10254
Unique Namerna10254
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length716
Alignment locationKK037268.1:8033..9163 +

Link to JBrowse

Properties
Property NameValue
Productpurple acid phosphatase
Orig transcript idgnl|cribi|Naga_100509g2.3553.mrna
Orig protein idgnl|cribi|Naga_100509g2.3553
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:8033..9163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100509g2gene9956Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10254rna10254-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20450.1cds10223Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10254 ID=rna10254|Name=rna10254|organism=Nannochloropsis gaditana|type=mRNA|length=716bp
ATGCAAGCGCACCTGGCCCGTCTTCCCTCCGTGCTGTCCGCCGTGCTACA
GCGGCCATTAGGCTCCTTTCGCATCACCCTCAGCTCCTCGGAGGGTTGGA
AGGAGGACGAGGTGGAGGACGGGAGGGAGGAAGAGGTGGAAGTCATCGGC
ATGAAGACCTTCCTGTGGATGCTACGACATCGGAGACCTACCACCGTCGC
TGCCCTCTATGCGTCTTACGGGTCAGCGTCTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTCCCCTCTGGTCTCCGGAGGGGAATCC
TCGGGGGCCGTGCGCGGGGAAGGGGACCCAGGAGGGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGATGGGAAGCTGGACGGGCATCGATCGACGTTGCGGG
AGCTGATGCGCTTTGCCTACGCCGACAGCCACGTGGTAAGGAGTGCGGGA
GGGAGGGAAGGGTAGAGGATGAAAATGGAGGACTTATGCAAAGGATACGC
GTAAGGAGGGCGGGAGGGAGGGAAGGAGGACGGGAGGGAGGAAGGCAGAA
GGAGAGAAATGGAGCATTGAATGGGAGAGGTGTACTTTCCGTTGTGCTTG
TGAAGAAAGGGAGGGAGGGAGGGGTAGAGGGGGGAAGAGGAAGGACTTGC
GCAAGAGAGAGGTGCCTTTTCAGCCTGTGGCATCCAAGTGCATCCCTTCC
TCCACTTGTACCCTCC
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protein sequence of rna10254

>rna10254-protein ID=rna10254-protein|Name=rna10254|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MASSLAHVILSFLLHVLCLLVGPRALAAPIPSAVGEDAWSFFTIGDWGSG
TSNQSAVAATMGAWGKRYNPQFIVALGDNFYENGVDSVDDPLWNTRYCSV
YTDPALLDVPWYAILGNHDYYGGYADAQIEGREELAGLPILSLPHALAPA
CLASF
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mRNA from alignment at KK037268.1:8033..9163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10254 ID=rna10254|Name=rna10254|organism=Nannochloropsis gaditana|type=mRNA|length=1131bp|location=Sequence derived from alignment at KK037268.1:8033..9163+ (Nannochloropsis gaditana)
ATGGCGTCATCACTGGCACACGTCATTCTGTCCTTTCTGCTCCATGTACT
CTGCCTTCTGGTGGGTCCCCGTGCGCTGGCtgcccccattccctcggcgg
tgggcgaggaTGCGTGGTCTTTCTTCACAATTGGTGACTGGGTAGGTGGA
TTTTCCAGCCTCTTACTTTCCCTTAGCGCGCATATTATCGGGAGGAGACG
TAAGGGCTTATTTTGCTCTTCGATATGAAAGCAAAGCTTGATGTCGCGTC
CTTGGGACccgtccccccgccccaACTTGTTTTTCTGTAATCGAAACACA
GGGTTCCGGCACCAGTAATCAAAGCGCTGTCGCCGCCACGATGGGCGCTT
GGGGCAAACGCTACAATCCACAATTTATAGTAGCACTTGGTaagcgggag
agggatttATAGAGGTGGGCGAGCGACGCCTTGCATGTGGGAGACAGAGA
GCCGTGGCCCGAGACTCaatcgccctccttctcctccgacgCAATCCTAt
gcgctttcttccttgccaGGGGACAATTTCTACGAGAACGGCGTCGACTC
CGTGGACGACCCTCTGTGGAACACCCGGTATTGCAGTGTCTACACTgacc
ctgccctccttgacgtTCCTTGGTATGCTATCCTGGGTAcgtcttccatc
ctcctccctccctcccttcctccctccctccctccctccctccctccctc
ccatctggCATGCTCTCTTATTTCCTGTTTCTTAAGGCATCATCGCCCTT
GACCCTCTGCACGCTCTCTCGGCCCTAgttttttccttctcatcgtcgtc
ctccccacccccttccagGAAATCATGACTACTACGGCGGGTAAGGAGAT
AAACCAAGGGAGTAGCGGGCGGAAAAAACAAGAGTTTATGAGTGGCAtac
atcacctcctcccaccctctcactttctctccctccccccaaaTCTCTCA
GGTACGCCGACGCGCAGATCGAGTACTACCTAGAGCGTCTGGATCCTGCC
CACCGCTGGGTCATGCCCTCCCACTACTACACCTTCACGTGGCCGGACGt
agggggcgggaagagctTGCAGGTCTCCcgatcctctctctcccccacgc
cctcgcccctgCTTGTCTCGCTTCTTTCTAG
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Coding sequence (CDS) from alignment at KK037268.1:8033..9163+

>rna10254 ID=rna10254|Name=rna10254|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at KK037268.1:8033..9163+ (Nannochloropsis gaditana)
ATGGCGTCATCACTGGCACACGTCATTCTGTCCTTTCTGCTCCATGTACT
CTGCCTTCTGGTGGGTCCCCGTGCGCTGGCtgcccccattccctcggcgg
tgggcgaggaTGCGTGGTCTTTCTTCACAATTGGTGACTGGGGTTCCGGC
ACCAGTAATCAAAGCGCTGTCGCCGCCACGATGGGCGCTTGGGGCAAACG
CTACAATCCACAATTTATAGTAGCACTTGGGGACAATTTCTACGAGAACG
GCGTCGACTCCGTGGACGACCCTCTGTGGAACACCCGGTATTGCAGTGTC
TACACTgaccctgccctccttgacgtTCCTTGGTATGCTATCCTGGGAAA
TCATGACTACTACGGCGGGTACGCCGACGCGCAGATCGAggggcgggaag
agctTGCAGGTCTCCcgatcctctctctcccccacgccctcgcccctgCT
TGTCTCGCTTCTTTCTAGATGGCGTCATCACTGGCACACGTCATTCTGTC
CTTTCTGCTCCATGTACTCTGCCTTCTGGTGGGTCCCCGTGCGCTGGCtg
cccccattccctcggcggtgggcgaggaTGCGTGGTCTTTCTTCACAATT
GGTGACTGGGGTTCCGGCACCAGTAATCAAAGCGCTGTCGCCGCCACGAT
GGGCGCTTGGGGCAAACGCTACAATCCACAATTTATAGTAGCACTTGGGG
ACAATTTCTACGAGAACGGCGTCGACTCCGTGGACGACCCTCTGTGGAAC
ACCCGGTATTGCAGTGTCTACACTgaccctgccctccttgacgtTCCTTG
GTATGCTATCCTGGGAAATCATGACTACTACGGCGGGTACGCCGACGCGC
AGATCGAggggcgggaagagctTGCAGGTCTCCcgatcctctctctcccc
cacgccctcgcccctgCTTGTCTCGCTTCTTTCTAGATGGCGTCATCACT
GGCACACGTCATTCTGTCCTTTCTGCTCCATGTACTCTGCCTTCTGGTGG
GTCCCCGTGCGCTGGCtgcccccattccctcggcggtgggcgaggaTGCG
TGGTCTTTCTTCACAATTGGTGACTGGGGTTCCGGCACCAGTAATCAAAG
CGCTGTCGCCGCCACGATGGGCGCTTGGGGCAAACGCTACAATCCACAAT
TTATAGTAGCACTTGGGGACAATTTCTACGAGAACGGCGTCGACTCCGTG
GACGACCCTCTGTGGAACACCCGGTATTGCAGTGTCTACACTgaccctgc
cctccttgacgtTCCTTGGTATGCTATCCTGGGAAATCATGACTACTACG
GCGGGTACGCCGACGCGCAGATCGAggggcgggaagagctTGCAGGTCTC
CcgatcctctctctcccccacgccctcgcccctgCTTGTCTCGCTTCTTT
CTAGATGGCGTCATCACTGGCACACGTCATTCTGTCCTTTCTGCTCCATG
TACTCTGCCTTCTGGTGGGTCCCCGTGCGCTGGCtgcccccattccctcg
gcggtgggcgaggaTGCGTGGTCTTTCTTCACAATTGGTGACTGGGGTTC
CGGCACCAGTAATCAAAGCGCTGTCGCCGCCACGATGGGCGCTTGGGGCA
AACGCTACAATCCACAATTTATAGTAGCACTTGGGGACAATTTCTACGAG
AACGGCGTCGACTCCGTGGACGACCCTCTGTGGAACACCCGGTATTGCAG
TGTCTACACTgaccctgccctccttgacgtTCCTTGGTATGCTATCCTGG
GAAATCATGACTACTACGGCGGGTACGCCGACGCGCAGATCGAggggcgg
gaagagctTGCAGGTCTCCcgatcctctctctcccccacgccctcgcccc
tgCTTGTCTCGCTTCTTTCTAGATGGCGTCATCACTGGCACACGTCATTC
TGTCCTTTCTGCTCCATGTACTCTGCCTTCTGGTGGGTCCCCGTGCGCTG
GCtgcccccattccctcggcggtgggcgaggaTGCGTGGTCTTTCTTCAC
AATTGGTGACTGGGGTTCCGGCACCAGTAATCAAAGCGCTGTCGCCGCCA
CGATGGGCGCTTGGGGCAAACGCTACAATCCACAATTTATAGTAGCACTT
GGGGACAATTTCTACGAGAACGGCGTCGACTCCGTGGACGACCCTCTGTG
GAACACCCGGTATTGCAGTGTCTACACTgaccctgccctccttgacgtTC
CTTGGTATGCTATCCTGGGAAATCATGACTACTACGGCGGGTACGCCGAC
GCGCAGATCGAggggcgggaagagctTGCAGGTCTCCcgatcctctctct
cccccacgccctcgcccctgCTTGTCTCGCTTCTTTCTAGATGGCGTCAT
CACTGGCACACGTCATTCTGTCCTTTCTGCTCCATGTACTCTGCCTTCTG
GTGGGTCCCCGTGCGCTGGCtgcccccattccctcggcggtgggcgagga
TGCGTGGTCTTTCTTCACAATTGGTGACTGGGGTTCCGGCACCAGTAATC
AAAGCGCTGTCGCCGCCACGATGGGCGCTTGGGGCAAACGCTACAATCCA
CAATTTATAGTAGCACTTGGGGACAATTTCTACGAGAACGGCGTCGACTC
CGTGGACGACCCTCTGTGGAACACCCGGTATTGCAGTGTCTACACTgacc
ctgccctccttgacgtTCCTTGGTATGCTATCCTGGGAAATCATGACTAC
TACGGCGGGTACGCCGACGCGCAGATCGAggggcgggaagagctTGCAGG
TCTCCcgatcctctctctcccccacgccctcgcccctgCTTGTCTCGCTT
CTTTCTAG
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Synonyms
Publications