rna1025, rna1025 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1025
Unique Name	rna1025
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	672
Alignment location	CM002456.1:992613..993842 -

Link to JBrowse

Properties


Property Name	Value
Product	regulator of ribonuclease activity a
Orig transcript id	gnl\|cribi\|Naga_100050g35.6857.mrna
Orig protein id	gnl\|cribi\|Naga_100050g35.6857
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:992613..993842 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g35	gene988	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29634.1	cds1024	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1025	rna1025-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:992613..993842-
coding sequence from alignment at CM002456.1:992613..993842-

mRNA sequence

>rna1025 ID=rna1025|Name=rna1025|organism=Nannochloropsis gaditana|type=mRNA|length=672bp
ATGGCGAGTGTCGCCGCGAAACAGGGTAGCCGTCCTCGTTGGCTGTACTT
GTTCGACCTGGACGGCACTCTTTACTCCAACGAAAATGGTTACCGCGACA
ACATCCTCAAAAACCTATGGGAATACATGCACGAGCATATGGGAATTCCA
CGCTCGACTCCCGCGAAGCACATATGGCGACCGTTGTTTGACAAATATCA
TCAGTCTTTTCGGGCATTCAAGGCTCAAGGGTGGATAGATGACTCTAAAT
CTGGGCATTATTGGAGTTATATCCGAAAAGACGTCGACAAATTTCTCGTC
CCTGATCCTGACCTGGATACTTTCCTGGAGTCATTGCCAAAGCATTGTCC
CAAGTATATTTTCACAAATGCAAGAGAAGAACAGGCGCGCGAAGCTCTGG
CCTGCTTGGGTGTAGAAAGGCATTTCGAGGGGATTTTCGGGAGCGAGCAC
ATGGGGGACCATTGCAAGCCCGAGCCAGAAGCCTTTGAGAAGGTGCTCAA
GGCAATACCATTGACTCTAGTGGAAGGCAGAGATGGAAGAGAAGGAAACG
CGGCAGAGGAAACGGGGCAGGATGGATGGGCGGGTGAGAGCATCGTCTTA
TTTGAAGATAGCTTCAAAAATTTAATGGCGGCCAAGCAGCTCGGAATGAA
AACGGTGTTGATCTGTGAGTAG

protein sequence of rna1025

>rna1025-protein ID=rna1025-protein|Name=rna1025|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQP
IAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIV
TIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGW
AGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVT
FKPGHYVYSDSDGIIVSETPLHQT

mRNA from alignment at CM002456.1:992613..993842-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1025 ID=rna1025|Name=rna1025|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp|location=Sequence derived from alignment at CM002456.1:992613..993842- (Nannochloropsis gaditana)
CCTCGATTAGACCCGGCCTACACGAGAAAGTACTTGGTTTGCACGGGTTG
TCTTTCAAAATGGATCTGCTCTAATCGTTGTCGGGACACCATGGGTCAAC
CTCCCCACCCCTACATCTCAGTGCAATGGAAGGCGACTGTCGGCCCATCG
CGACAAACGGCATGTTTAGGTTTTTAATCTACATGTGTATAGTAAAGATG
TAGCACACTTTGATGGTACCCTGCTTGAGGCAAAATACCCCCCACGCTGT
ATCTTTTACCCTCTTACTAAGCTAGCGTCATCACAGCTGTTCCGTCTCGG
ATGATGCACGGACACCTACAACCGCATGAGCATACAGAAACATACCCACA
TAAGCGCAATCAGACACATATTAACTTCTTCTCCATTTTGTCGCGACAGT
AATCCAGATGCTGCCGCGCGTCGTCTCTAATGCCTTCGGACGGGCTGGTC
CCAAATTGAGCCGGCACCTCACTTCATCGTCTCATGCACTCTCCGCGAGT
CGTAACTCCAATGCCGCGCTATTTATGGCCGCGACTACCTTCACATTATG
CCAACCAATAGCAATAGCTCACATGATGAGCACTTGCGCATCCAGGCCGC
CCGCAACGGCTGACTTGTGTGACGACCACGAGCACCGCCTGCAGGTTGCC
GACGGCAATGCTTTTCACTCTTTTGGACAGCATTCTTCGTTTTGTGGCGA
GATAGTCACCATCAAATGCTTTGAGAACAATCCATTGGTGCGAGCCACCC
TGAGTGAGCCCGGAGAGGGACGGGTGCTGGTGGTTGACGGAGGGGGTTCC
CTACGCCGAGCTTTGTTTGGTGATAACATTGCAGCGCTGGCGGTGAAGAA
CGGATGGGCGGGCGTCGTCATTTACGGCGCTATCCGAGACTCTGCTGTTA
TAAACACCATGCCCTTGGGAGTCAAAGCTCTGGGTACAAATCCTGTGAAA
AGTGCCAAGCAGCATCCAGGCGACAGAAACGTTGTGGTCACTTTTGCAGG
AGTCACCTTCAAGCCTGGACACTACGTGTACTCCGACTCTGACGGCATAA
TCGTGTCCGAGACCCCACTTCACCAGACGTGATCGACCATTCATCCTTGA
AGTAGAGAAGGGGTGAAAAGAAGGAGGAAGAGAAAGCACGGCGGGCGACC
TCGTATTGTCCGTAAACGGGAGTGGCCACACAGAAATAAAAGCTGTACCA
TAAATGAAAAAAACTGGAAAAACCATTTGC

Coding sequence (CDS) from alignment at CM002456.1:992613..993842-

>rna1025 ID=rna1025|Name=rna1025|organism=Nannochloropsis gaditana|type=CDS|length=675bp|location=Sequence derived from alignment at CM002456.1:992613..993842- (Nannochloropsis gaditana)
ATGCTGCCGCGCGTCGTCTCTAATGCCTTCGGACGGGCTGGTCCCAAATT
GAGCCGGCACCTCACTTCATCGTCTCATGCACTCTCCGCGAGTCGTAACT
CCAATGCCGCGCTATTTATGGCCGCGACTACCTTCACATTATGCCAACCA
ATAGCAATAGCTCACATGATGAGCACTTGCGCATCCAGGCCGCCCGCAAC
GGCTGACTTGTGTGACGACCACGAGCACCGCCTGCAGGTTGCCGACGGCA
ATGCTTTTCACTCTTTTGGACAGCATTCTTCGTTTTGTGGCGAGATAGTC
ACCATCAAATGCTTTGAGAACAATCCATTGGTGCGAGCCACCCTGAGTGA
GCCCGGAGAGGGACGGGTGCTGGTGGTTGACGGAGGGGGTTCCCTACGCC
GAGCTTTGTTTGGTGATAACATTGCAGCGCTGGCGGTGAAGAACGGATGG
GCGGGCGTCGTCATTTACGGCGCTATCCGAGACTCTGCTGTTATAAACAC
CATGCCCTTGGGAGTCAAAGCTCTGGGTACAAATCCTGTGAAAAGTGCCA
AGCAGCATCCAGGCGACAGAAACGTTGTGGTCACTTTTGCAGGAGTCACC
TTCAAGCCTGGACACTACGTGTACTCCGACTCTGACGGCATAATCGTGTC
CGAGACCCCACTTCACCAGACGTGA

Synonyms

Publications