EWM29634.1, cds1024 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|585112206|gb|EWM29634.1| (regulator of ribonuclease activity a [Nannochloropsis gaditana]) HSP 1 Score: 462.225 bits (1188), Expect = 1.099e-164 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query: 1 MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224
MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT
Sbjct: 1 MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|553193244|ref|XP_005855741.1| (regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526] >gi|422293323|gb|EKU20623.1| regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 376.711 bits (966), Expect = 1.281e-131 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 45 FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224
FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT
Sbjct: 1 FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 180
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|923028441|ref|WP_053422471.1| (ribonuclease activity regulator protein RraA [Azoarcus sp. PA01] >gi|922792669|gb|KON80291.1| ribonuclease activity regulator protein RraA [Azoarcus sp. PA01]) HSP 1 Score: 206.068 bits (523), Expect = 1.774e-64 Identity = 98/155 (63.23%), Postives = 120/155 (77.42%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
TADLCD HE R++V F S+G ++FCG I T+K FE+N LVRA L EPGEG+VLVVDGGGSLR AL GD +A L VKNGWAGV++YG IRDS I TM LGV ALGT+P+KS K+ G+R++ VTF GVTF PGH++Y+D DGI+VSE+ L
Sbjct: 5 TADLCDAHETRVKVVS-PMFRSYGARTAFCGPITTLKVFEDNSLVRAALEEPGEGKVLVVDGGGSLRCALVGDQLALLGVKNGWAGVIVYGCIRDSKPIGTMELGVFALGTHPLKSIKKGAGERDIAVTFGGVTFTPGHFLYADEDGIVVSESSL 158
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|550893879|ref|WP_022654614.1| (ribonuclease [Aquaspirillum serpens]) HSP 1 Score: 201.83 bits (512), Expect = 7.349e-63 Identity = 95/155 (61.29%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
T DLCD++ LQVA F S+G H+ FCGEI T+K FE+N LVR L++PG G+VLVVDGGGSLR AL GD I LAVKNGWAG+++YG IRDS IN +P+GV+AL T+P+KS K+ GD +V+TFAGVTF+PG VY D DG+IVS PL
Sbjct: 5 TTDLCDEYSDTLQVAT-PMFQSYGGHTRFCGEIQTVKVFEDNSLVREALAQPGHGKVLVVDGGGSLRCALVGDQIGELAVKNGWAGIIVYGCIRDSVAINALPIGVRALNTHPLKSVKKGAGDHQLVLTFAGVTFRPGQIVYVDEDGVIVSPKPL 158
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1094573463|emb|SEO80720.1| (regulator of ribonuclease activity A [Aquisalimonas asiatica]) HSP 1 Score: 197.593 bits (501), Expect = 3.781e-61 Identity = 96/157 (61.15%), Postives = 115/157 (73.25%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQ 223
T DLCDDH L +A F FG F G I T+K FE+N LVR LSEPGEGRVLVVDGGGS+R AL GDNIA LA+ NGW GVV+YG IRDSA I TM +GVKAL T+P+KS K+ G+R+V VTFAG+T + G Y+Y+D DG+IV++ LHQ
Sbjct: 5 TTDLCDDHSDNLSIA-SPMFRDFGGRREFHGPISTVKVFEDNSLVREALSEPGEGRVLVVDGGGSMRCALLGDNIAELAINNGWNGVVVYGCIRDSADIATMDIGVKALNTHPLKSVKKGVGERDVSVTFAGITIRAGQYLYADEDGLIVAQEALHQ 160
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1152023217|ref|WP_078120157.1| (ribonuclease activity regulator protein RraA [Chromatiaceae bacterium 2141T.STBD.0c.01a]) HSP 1 Score: 194.897 bits (494), Expect = 5.244e-60 Identity = 96/155 (61.94%), Postives = 114/155 (73.55%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
TADLCDDH +Q+ + F SFG + F G I TIKCFE+N LVR + EPGEGRVLVVD GGS R A+ GD +AA AV NGW+GVV+YG IRDSA I M LGVKALGT P+KS K+ G+R+V V F GV+F PGHY+Y+D DGII SE+ L
Sbjct: 5 TADLCDDHAESVQICE-PIFSSFGGKARFAGRISTIKCFEDNSLVREAVGEPGEGRVLVVDAGGSKRCAMLGDLLAAKAVDNGWSGVVMYGLIRDSADIAQMDLGVKALGTYPLKSVKKGIGERDVPVKFGGVSFAPGHYLYADEDGIICSESSL 158
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|751629852|ref|WP_041097661.1| (ribonuclease activity regulator protein RraA [Sulfuritalea hydrogenivorans] >gi|572100475|dbj|BAO28886.1| ribonuclease activity regulator protein RraA [Sulfuritalea hydrogenivorans sk43H]) HSP 1 Score: 193.356 bits (490), Expect = 2.123e-59 Identity = 90/156 (57.69%), Postives = 117/156 (75.00%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLH 222
T DLCD HE +++V + F+SFG ++F G I T+K FE+N LVR L PGEGRVLV+DGGGSLRRAL GD +AAL VKNGWAGV++YG IRDS I M +GV A+ T+P+K+ K++ G+ ++ VTF GVTF P ++Y+D DG+IVS TPLH
Sbjct: 5 TTDLCDAHEEKVRVVE-PMFNSFGGRTAFFGRIATLKLFEDNSLVRKALESPGEGRVLVIDGGGSLRRALVGDQLAALGVKNGWAGVIVYGCIRDSRAIGEMDIGVFAIDTHPMKTVKKNVGESDIPVTFGGVTFTPDEWLYADEDGVIVSATPLH 159
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1059956001|ref|WP_069037763.1| (ribonuclease activity regulator protein RraA [Methyloversatilis sp. RAC08] >gi|1059487500|gb|AOF80617.1| RraA family protein [Methyloversatilis sp. RAC08]) HSP 1 Score: 192.586 bits (488), Expect = 3.321e-59 Identity = 93/155 (60.00%), Postives = 115/155 (74.19%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
TADLCD E L++ F SFG HS+F G I T+K FE+N LVR L PG G+VLVVDGGGS+RRAL GD IAALAVKNGWAG+V+YG IRDSA I+ M +GV ALGT+P+K+ K++ G ++ V+F G+ F PGHY+Y+D DGIIVS L
Sbjct: 5 TADLCDQFEADLRIC-APMFRSFGGHSAFGGPISTLKLFEDNGLVRKALETPGNGKVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAISQMTIGVMALGTHPLKTVKRNEGQSDITVSFGGIDFVPGHYLYADGDGIIVSARAL 158
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|499557562|ref|WP_011238345.1| (ribonuclease [Aromatoleum aromaticum] >gi|81598678|sp|Q5P203.1|RRAAH_AROAE RecName: Full=Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Short=HMG aldolase; AltName: Full=Oxaloacetate decarboxylase; Short=OAA decarboxylase; AltName: Full=Regulator of ribonuclease activity homolog; AltName: Full=RraA-like protein >gi|56314016|emb|CAI08661.1| Demethylmenaquinone methyltransferase [Aromatoleum aromaticum EbN1]) HSP 1 Score: 192.586 bits (488), Expect = 3.911e-59 Identity = 89/155 (57.42%), Postives = 115/155 (74.19%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
TADLCD +E R+++ F S+G +FCG I T+K FE+N LVR L PG+G+VLVVDGGGS+R AL GD +A L VKN WAGV++YG IRDS I TM LGV ALG++P+KS K+ GD ++ VTF GVTF PGH++Y+D DG++VSE+ L
Sbjct: 5 TADLCDANESRVKIVS-PMFRSYGGRGAFCGRITTLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1148549045|ref|WP_077296774.1| (ribonuclease activity regulator protein RraA [Aquaspirillum sp. LM1] >gi|1148311049|gb|AQR64180.1| ribonuclease activity regulator protein RraA [Aquaspirillum sp. LM1]) HSP 1 Score: 192.2 bits (487), Expect = 5.857e-59 Identity = 93/155 (60.00%), Postives = 114/155 (73.55%), Query Frame = 0
Query: 67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
T DLCD H L+V F FG H+ F G++VT+K FE+N LVR TL++PGEGRVLVVDGGGSLR AL GD IA LAVKN WAG+V+YG IRDS IN +P+GV+AL T+P+KS K+ GD + VTF GVTF PG ++Y+D DG+IVS L
Sbjct: 5 TTDLCDAHSDHLRVV-APMFKRFGGHAQFSGQVVTLKLFEDNSLVRDTLAQPGEGRVLVVDGGGSLRCALVGDQIAELAVKNQWAGIVVYGCIRDSVAINALPIGVRALDTHPLKSIKKGVGDVEIPVTFGGVTFTPGDWLYADEDGVIVSAQAL 158 The following BLAST results are available for this feature:
BLAST of EWM29634.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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