EWM29634.1, cds1024 (CDS) Nannochloropsis gaditana

Overview
NameEWM29634.1
Unique Namecds1024
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:992761..993435 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29634.1
Productregulator of ribonuclease activity a
Orig transcript idgnl|cribi|Naga_100050g35.6857.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:992761..993435 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0051252regulation of RNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0003824catalytic activity
GO:0008428ribonuclease inhibitor activity
Vocabulary: INTERPRO
TermDefinition
IPR010203RraA
IPR005493RNase_E_inh/diMeMenaQ_MeTrfase
Homology
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|585112206|gb|EWM29634.1| (regulator of ribonuclease activity a [Nannochloropsis gaditana])

HSP 1 Score: 462.225 bits (1188), Expect = 1.099e-164
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224
            MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT
Sbjct:    1 MLPRVVSNAFGRAGPKLSRHLTSSSHALSASRNSNAALFMAATTFTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|553193244|ref|XP_005855741.1| (regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526] >gi|422293323|gb|EKU20623.1| regulator of ribonuclease activity a, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 376.711 bits (966), Expect = 1.281e-131
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:   45 FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 224
            FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT
Sbjct:    1 FTLCQPIAIAHMMSTCASRPPATADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQT 180          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|923028441|ref|WP_053422471.1| (ribonuclease activity regulator protein RraA [Azoarcus sp. PA01] >gi|922792669|gb|KON80291.1| ribonuclease activity regulator protein RraA [Azoarcus sp. PA01])

HSP 1 Score: 206.068 bits (523), Expect = 1.774e-64
Identity = 98/155 (63.23%), Postives = 120/155 (77.42%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            TADLCD HE R++V     F S+G  ++FCG I T+K FE+N LVRA L EPGEG+VLVVDGGGSLR AL GD +A L VKNGWAGV++YG IRDS  I TM LGV ALGT+P+KS K+  G+R++ VTF GVTF PGH++Y+D DGI+VSE+ L
Sbjct:    5 TADLCDAHETRVKVVS-PMFRSYGARTAFCGPITTLKVFEDNSLVRAALEEPGEGKVLVVDGGGSLRCALVGDQLALLGVKNGWAGVIVYGCIRDSKPIGTMELGVFALGTHPLKSIKKGAGERDIAVTFGGVTFTPGHFLYADEDGIVVSESSL 158          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|550893879|ref|WP_022654614.1| (ribonuclease [Aquaspirillum serpens])

HSP 1 Score: 201.83 bits (512), Expect = 7.349e-63
Identity = 95/155 (61.29%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            T DLCD++   LQVA    F S+G H+ FCGEI T+K FE+N LVR  L++PG G+VLVVDGGGSLR AL GD I  LAVKNGWAG+++YG IRDS  IN +P+GV+AL T+P+KS K+  GD  +V+TFAGVTF+PG  VY D DG+IVS  PL
Sbjct:    5 TTDLCDEYSDTLQVAT-PMFQSYGGHTRFCGEIQTVKVFEDNSLVREALAQPGHGKVLVVDGGGSLRCALVGDQIGELAVKNGWAGIIVYGCIRDSVAINALPIGVRALNTHPLKSVKKGAGDHQLVLTFAGVTFRPGQIVYVDEDGVIVSPKPL 158          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1094573463|emb|SEO80720.1| (regulator of ribonuclease activity A [Aquisalimonas asiatica])

HSP 1 Score: 197.593 bits (501), Expect = 3.781e-61
Identity = 96/157 (61.15%), Postives = 115/157 (73.25%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLHQ 223
            T DLCDDH   L +A    F  FG    F G I T+K FE+N LVR  LSEPGEGRVLVVDGGGS+R AL GDNIA LA+ NGW GVV+YG IRDSA I TM +GVKAL T+P+KS K+  G+R+V VTFAG+T + G Y+Y+D DG+IV++  LHQ
Sbjct:    5 TTDLCDDHSDNLSIA-SPMFRDFGGRREFHGPISTVKVFEDNSLVREALSEPGEGRVLVVDGGGSMRCALLGDNIAELAINNGWNGVVVYGCIRDSADIATMDIGVKALNTHPLKSVKKGVGERDVSVTFAGITIRAGQYLYADEDGLIVAQEALHQ 160          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1152023217|ref|WP_078120157.1| (ribonuclease activity regulator protein RraA [Chromatiaceae bacterium 2141T.STBD.0c.01a])

HSP 1 Score: 194.897 bits (494), Expect = 5.244e-60
Identity = 96/155 (61.94%), Postives = 114/155 (73.55%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            TADLCDDH   +Q+ +   F SFG  + F G I TIKCFE+N LVR  + EPGEGRVLVVD GGS R A+ GD +AA AV NGW+GVV+YG IRDSA I  M LGVKALGT P+KS K+  G+R+V V F GV+F PGHY+Y+D DGII SE+ L
Sbjct:    5 TADLCDDHAESVQICE-PIFSSFGGKARFAGRISTIKCFEDNSLVREAVGEPGEGRVLVVDAGGSKRCAMLGDLLAAKAVDNGWSGVVMYGLIRDSADIAQMDLGVKALGTYPLKSVKKGIGERDVPVKFGGVSFAPGHYLYADEDGIICSESSL 158          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|751629852|ref|WP_041097661.1| (ribonuclease activity regulator protein RraA [Sulfuritalea hydrogenivorans] >gi|572100475|dbj|BAO28886.1| ribonuclease activity regulator protein RraA [Sulfuritalea hydrogenivorans sk43H])

HSP 1 Score: 193.356 bits (490), Expect = 2.123e-59
Identity = 90/156 (57.69%), Postives = 117/156 (75.00%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPLH 222
            T DLCD HE +++V +   F+SFG  ++F G I T+K FE+N LVR  L  PGEGRVLV+DGGGSLRRAL GD +AAL VKNGWAGV++YG IRDS  I  M +GV A+ T+P+K+ K++ G+ ++ VTF GVTF P  ++Y+D DG+IVS TPLH
Sbjct:    5 TTDLCDAHEEKVRVVE-PMFNSFGGRTAFFGRIATLKLFEDNSLVRKALESPGEGRVLVIDGGGSLRRALVGDQLAALGVKNGWAGVIVYGCIRDSRAIGEMDIGVFAIDTHPMKTVKKNVGESDIPVTFGGVTFTPDEWLYADEDGVIVSATPLH 159          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1059956001|ref|WP_069037763.1| (ribonuclease activity regulator protein RraA [Methyloversatilis sp. RAC08] >gi|1059487500|gb|AOF80617.1| RraA family protein [Methyloversatilis sp. RAC08])

HSP 1 Score: 192.586 bits (488), Expect = 3.321e-59
Identity = 93/155 (60.00%), Postives = 115/155 (74.19%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            TADLCD  E  L++     F SFG HS+F G I T+K FE+N LVR  L  PG G+VLVVDGGGS+RRAL GD IAALAVKNGWAG+V+YG IRDSA I+ M +GV ALGT+P+K+ K++ G  ++ V+F G+ F PGHY+Y+D DGIIVS   L
Sbjct:    5 TADLCDQFEADLRIC-APMFRSFGGHSAFGGPISTLKLFEDNGLVRKALETPGNGKVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAISQMTIGVMALGTHPLKTVKRNEGQSDITVSFGGIDFVPGHYLYADGDGIIVSARAL 158          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|499557562|ref|WP_011238345.1| (ribonuclease [Aromatoleum aromaticum] >gi|81598678|sp|Q5P203.1|RRAAH_AROAE RecName: Full=Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Short=HMG aldolase; AltName: Full=Oxaloacetate decarboxylase; Short=OAA decarboxylase; AltName: Full=Regulator of ribonuclease activity homolog; AltName: Full=RraA-like protein >gi|56314016|emb|CAI08661.1| Demethylmenaquinone methyltransferase [Aromatoleum aromaticum EbN1])

HSP 1 Score: 192.586 bits (488), Expect = 3.911e-59
Identity = 89/155 (57.42%), Postives = 115/155 (74.19%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            TADLCD +E R+++     F S+G   +FCG I T+K FE+N LVR  L  PG+G+VLVVDGGGS+R AL GD +A L VKN WAGV++YG IRDS  I TM LGV ALG++P+KS K+  GD ++ VTF GVTF PGH++Y+D DG++VSE+ L
Sbjct:    5 TADLCDANESRVKIVS-PMFRSYGGRGAFCGRITTLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158          
BLAST of EWM29634.1 vs. NCBI_GenBank
Match: gi|1148549045|ref|WP_077296774.1| (ribonuclease activity regulator protein RraA [Aquaspirillum sp. LM1] >gi|1148311049|gb|AQR64180.1| ribonuclease activity regulator protein RraA [Aquaspirillum sp. LM1])

HSP 1 Score: 192.2 bits (487), Expect = 5.857e-59
Identity = 93/155 (60.00%), Postives = 114/155 (73.55%), Query Frame = 0
Query:   67 TADLCDDHEHRLQVADGNAFHSFGQHSSFCGEIVTIKCFENNPLVRATLSEPGEGRVLVVDGGGSLRRALFGDNIAALAVKNGWAGVVIYGAIRDSAVINTMPLGVKALGTNPVKSAKQHPGDRNVVVTFAGVTFKPGHYVYSDSDGIIVSETPL 221
            T DLCD H   L+V     F  FG H+ F G++VT+K FE+N LVR TL++PGEGRVLVVDGGGSLR AL GD IA LAVKN WAG+V+YG IRDS  IN +P+GV+AL T+P+KS K+  GD  + VTF GVTF PG ++Y+D DG+IVS   L
Sbjct:    5 TTDLCDAHSDHLRVV-APMFKRFGGHAQFSGQVVTLKLFEDNSLVRDTLAQPGEGRVLVVDGGGSLRCALVGDQIAELAVKNQWAGIVVYGCIRDSVAINALPIGVRALDTHPLKSIKKGVGDVEIPVTFGGVTFTPGDWLYADEDGVIVSAQAL 158          
The following BLAST results are available for this feature:
BLAST of EWM29634.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112206|gb|EWM29634.1|1.099e-164100.00regulator of ribonuclease activity a [Nannochlorop... [more]
gi|553193244|ref|XP_005855741.1|1.281e-131100.00regulator of ribonuclease activity a, partial [Nan... [more]
gi|923028441|ref|WP_053422471.1|1.774e-6463.23ribonuclease activity regulator protein RraA [Azoa... [more]
gi|550893879|ref|WP_022654614.1|7.349e-6361.29ribonuclease [Aquaspirillum serpens][more]
gi|1094573463|emb|SEO80720.1|3.781e-6161.15regulator of ribonuclease activity A [Aquisalimona... [more]
gi|1152023217|ref|WP_078120157.1|5.244e-6061.94ribonuclease activity regulator protein RraA [Chro... [more]
gi|751629852|ref|WP_041097661.1|2.123e-5957.69ribonuclease activity regulator protein RraA [Sulf... [more]
gi|1059956001|ref|WP_069037763.1|3.321e-5960.00ribonuclease activity regulator protein RraA [Meth... [more]
gi|499557562|ref|WP_011238345.1|3.911e-5957.42ribonuclease [Aromatoleum aromaticum] >gi|81598678... [more]
gi|1148549045|ref|WP_077296774.1|5.857e-5960.00ribonuclease activity regulator protein RraA [Aqua... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1025rna1025Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications