rna1024, rna1024 (mRNA) Nannochloropsis gaditana

Overview
Namerna1024
Unique Namerna1024
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1570
Alignment locationCM002456.1:991163..992107 +

Link to JBrowse

Properties
Property NameValue
ProductHAD-like domain protein
Orig transcript idgnl|cribi|Naga_100050g37.6850.mrna
Orig protein idgnl|cribi|Naga_100050g37.6850
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:991163..992107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g37gene987Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1024rna1024-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29627.1cds1023Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1024 ID=rna1024|Name=rna1024|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp
CTGTAATTTCGTTCTCCGGGGACAAGACACTGTGAAACATTTGGGGAAAG
GTTATGAGAGTAGATGCGGGGCTAGTGAGAACCCAGTCGCTAAAATCGCT
TGCTTTCACTGGCAGTTTCCTCTCGAGGGTTTTTCGAAGAGTCTCACAGG
TTCTGCCAATCGTTTGCATAAAAAAGACGTCTTTCTCCGAGCCTGGTGGT
AATGCGAAAGTCCTGGTATATCATGGCTAAGTTAAACATTTGATGGAAGC
TTAAACGCTCCAACCAACCTCCTCCCTGCTGAAGCATTCAGACGCTGCGC
TGACCAGCATAAGCTTTGCATCCACAATGATCTGCATGAAGCCCGGGCTC
TTAAAAACAAATTTTATATTTGAAGCTAGCTTTTCGAAGACGATGAAAGA
CCATTATGGTGTGCGCATAAAGTCGTGTTGTGAGAAAGTGCTCAATATGG
CAAGCAACCGCATCTCCTCACTGCGGCTGGTGTGTTGCCTTCTAGCCGGT
GACTGTGCGACAGGGCATTATGGTCGAATGTGGTTCATGTTCAAATGTAA
TGAGTGGCGGAGTATGATTCACATACACTCTTTATGTTCTGTAGATACCC
CTCGTACAGGTGCATGCATGCCTTGGTCAAATCGAAGAAGTCCCACATCC
ACTGTCCTTCGGTTTGGTTTGTCCCTCGTCCTTCTCAGGGGACCATCCGG
TTTTTCAACCAGAAGATCACCCTATGCACGGACAAACGAAATAAACAGCC
TTCCAGGGCGTCGTTTTTGCAGCACCACCCGTCCACGTGGTTTCACACAT
ACAATCGCGTTGTCTCCAATTGGCCTCTCACCTCTACCTTCCAAAATCGT
AGCCCTGCCTGCCTCTTCTTCCACCAGTTCCTCTTCGTTTAACCCCTCGT
CATCTCCGTCTGGAATGGACGATGCGGCTGTCATAGCGCGTACCCAAGCT
TGGATACACAATATGGTCATTCGCATCCCACTCTGCCCCTTTGCGGAGAA
AGTAGTGCAAGACAACACCGTTCGTTACGTCGTTGTTCGAGCCCGGAGAA
AGAGTGACATAATTGCACATGTCCTAGAAGAGGCTAGAGCCTTGGTCGAG
ACGCCCGAGGACGTGACCGCCACAACCATCGTCCTCGCCCCCGACGCCTT
TGTCGAAGATTTTTCCGCGTTCTACGAGACAGAGCGCTTCCTGGAGGCAT
CTTTGGAAGCGTCGGATCTTCAACATGTCGTCCTATTGGCAGCATTTCAT
CCGCAGTACACGTTCGGGGGTGGACTGTCGGAGCTGGATCCCATACATTT
TGAAAAGCGCTCGCCTTTCCCGGTGTTCAATTTGCTACGAGCGGAGAGGG
TGTGGGCCTACGCGAACGAAGGATTGACCGAGAAGATTGCGGATCGGAAC
GAAGCGGCATTGGCTGCGATCGGGATCGACGAGGTGCGAAGGAGATTCAC
CTTGTCGGAGAAAGAAGTAGAGCGATATAATGGGGGGAAGGAATACGGAG
TCTCAGAAGGAAGCGGGGTTTAAAGCTGCAAGAAGTACATGACCTGCAAA
TGAAAGAGACCGGGTCTCGA
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protein sequence of rna1024

>rna1024-protein ID=rna1024-protein|Name=rna1024|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIP
RSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLV
PDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEH
MGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVL
FEDSFKNLMAAKQLGMKTVLICE
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mRNA from alignment at CM002456.1:991163..992107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1024 ID=rna1024|Name=rna1024|organism=Nannochloropsis gaditana|type=mRNA|length=945bp|location=Sequence derived from alignment at CM002456.1:991163..992107+ (Nannochloropsis gaditana)
ATGGTATTGTGGGCTGTCGAAAATAGGCTGGGGCTGATATATACCAAGTA
ATCAAATTAAAACTTTTTTTGGTATATACATTATTCATACGTGGAATAGT
ATGAAGTCCAGTTATATCCATTTCATATCTTTTTCACGCCTTCAAAATAT
GCGAAGGCGAGTGTCGCCGCGAAACAGGGTAGCCGTCCTCGTTGGCTGTA
CTTGTTCGACCTGGACGGCACTCTTTACTCCAACGAAAATGGTTACCGCG
ACAACATCCTCAAAAACCTATGGGAATACATGCACGAGCATATGGGAATT
CCACGCTCGACTCCCGCGAAGCACATATGGTAAAacatccttttcccttc
cggGGTCATCCGCACATTCCGTCCGTCTCATGCCCTCCGTGCCactcctc
caaccccttttGTCTCTGCTCCCAATCTTTGTGGTAATTATTGCGACAGG
CGACCGTTGTTTGACAAATATCATCAGTCTTTTCGGGCATTCAAGGCTCA
AGGGTGGATAGATGACTCTAAATCTGGGCATTATTGGAGTTATATCCGAA
AAGACGTCGACAAATTTCTCGTCCCTGATCCTGACCTGGATACTTTCCTG
GAGTCATTGCCAAAGCATTGTCCCAAGTATATTTTCACAAATGCAAGAGA
AGAACAGGCGCGCGAAGCTCTGGCCTGCTTGGGTGTAGAAAGGCATTTCG
AGGGGATTTTCGGGAGCGAGCACATGGGGGACCATTGCAAGCCCGAGCCA
GAAGCCTTTGAGAAGGTGCTCAAGGCAATACCATTGACTCTAGTGGAAGG
cagagatggaagagaaggaaacgcGGCAGAGGAAACGGGGCAGGATGGAT
GGGCGGGTGAGAGCATCGTCTTATTTGAAGATAGCTTCAAAAATTTAATG
GCGGCCAAGCAGCTCGGAATGAAAACGGTGTTGATCTGTGAGTAG
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Coding sequence (CDS) from alignment at CM002456.1:991163..992107+

>rna1024 ID=rna1024|Name=rna1024|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002456.1:991163..992107+ (Nannochloropsis gaditana)
ATGGCGAGTGTCGCCGCGAAACAGGGTAGCCGTCCTCGTTGGCTGTACTT
GTTCGACCTGGACGGCACTCTTTACTCCAACGAAAATGGTTACCGCGACA
ACATCCTCAAAAACCTATGGGAATACATGCACGAGCATATGGGAATTCCA
CGCTCGACTCCCGCGAAGCACATATGGCGACCGTTGTTTGACAAATATCA
TCAGTCTTTTCGGGCATTCAAGGCTCAAGGGTGGATAGATGACTCTAAAT
CTGGGCATTATTGGAGTTATATCCGAAAAGACGTCGACAAATTTCTCGTC
CCTGATCCTGACCTGGATACTTTCCTGGAGTCATTGCCAAAGCATTGTCC
CAAGTATATTTTCACAAATGCAAGAGAAGAACAGGCGCGCGAAGCTCTGG
CCTGCTTGGGTGTAGAAAGGCATTTCGAGGGGATTTTCGGGAGCGAGCAC
ATGGGGGACCATTGCAAGCCCGAGCCAGAAGCCTTTGAGAAGGTGCTCAA
GGCAATACCATTGACTCTAGTGGAAGGcagagatggaagagaaggaaacg
cGGCAGAGGAAACGGGGCAGGATGGATGGGCGGGTGAGAGCATCGTCTTA
TTTGAAGATAGCTTCAAAAATTTAATGGCGGCCAAGCAGCTCGGAATGAA
AACGGTGTTGATCTGTGAGTAGATGGCGAGTGTCGCCGCGAAACAGGGTA
GCCGTCCTCGTTGGCTGTACTTGTTCGACCTGGACGGCACTCTTTACTCC
AACGAAAATGGTTACCGCGACAACATCCTCAAAAACCTATGGGAATACAT
GCACGAGCATATGGGAATTCCACGCTCGACTCCCGCGAAGCACATATGGC
GACCGTTGTTTGACAAATATCATCAGTCTTTTCGGGCATTCAAGGCTCAA
GGGTGGATAGATGACTCTAAATCTGGGCATTATTGGAGTTATATCCGAAA
AGACGTCGACAAATTTCTCGTCCCTGATCCTGACCTGGATACTTTCCTGG
AGTCATTGCCAAAGCATTGTCCCAAGTATATTTTCACAAATGCAAGAGAA
GAACAGGCGCGCGAAGCTCTGGCCTGCTTGGGTGTAGAAAGGCATTTCGA
GGGGATTTTCGGGAGCGAGCACATGGGGGACCATTGCAAGCCCGAGCCAG
AAGCCTTTGAGAAGGTGCTCAAGGCAATACCATTGACTCTAGTGGAAGGc
agagatggaagagaaggaaacgcGGCAGAGGAAACGGGGCAGGATGGATG
GGCGGGTGAGAGCATCGTCTTATTTGAAGATAGCTTCAAAAATTTAATGG
CGGCCAAGCAGCTCGGAATGAAAACGGTGTTGATCTGTGAGTAGATGGCG
AGTGTCGCCGCGAAACAGGGTAGCCGTCCTCGTTGGCTGTACTTGTTCGA
CCTGGACGGCACTCTTTACTCCAACGAAAATGGTTACCGCGACAACATCC
TCAAAAACCTATGGGAATACATGCACGAGCATATGGGAATTCCACGCTCG
ACTCCCGCGAAGCACATATGGCGACCGTTGTTTGACAAATATCATCAGTC
TTTTCGGGCATTCAAGGCTCAAGGGTGGATAGATGACTCTAAATCTGGGC
ATTATTGGAGTTATATCCGAAAAGACGTCGACAAATTTCTCGTCCCTGAT
CCTGACCTGGATACTTTCCTGGAGTCATTGCCAAAGCATTGTCCCAAGTA
TATTTTCACAAATGCAAGAGAAGAACAGGCGCGCGAAGCTCTGGCCTGCT
TGGGTGTAGAAAGGCATTTCGAGGGGATTTTCGGGAGCGAGCACATGGGG
GACCATTGCAAGCCCGAGCCAGAAGCCTTTGAGAAGGTGCTCAAGGCAAT
ACCATTGACTCTAGTGGAAGGcagagatggaagagaaggaaacgcGGCAG
AGGAAACGGGGCAGGATGGATGGGCGGGTGAGAGCATCGTCTTATTTGAA
GATAGCTTCAAAAATTTAATGGCGGCCAAGCAGCTCGGAATGAAAACGGT
GTTGATCTGTGAGTAG
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Synonyms
Publications