EWM29627.1, cds1023 (CDS) Nannochloropsis gaditana

Overview
NameEWM29627.1
Unique Namecds1023
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:991163..991165 +
Alignment locationCM002456.1:991319..991491 +
Alignment locationCM002456.1:991612..992107 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29627.1
ProductHAD-like domain protein
Orig transcript idgnl|cribi|Naga_100050g37.6850.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:991163..991165 +
CM002456.1supercontigCM002456.1:991319..991491 +
CM002456.1supercontigCM002456.1:991612..992107 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
Homology
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|585112199|gb|EWM29627.1| (HAD-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 468.774 bits (1205), Expect = 2.064e-167
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLICE 223
            MASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLICE
Sbjct:    1 MASVAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLICE 223          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|1072230539|gb|OEU15272.1| (HAD-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 142.51 bits (358), Expect = 5.454e-39
Identity = 81/212 (38.21%), Postives = 117/212 (55.19%), Query Frame = 0
Query:   17 LFDLDGTLYSNENGYRDNILKNLWEYMHEHMG-----IPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHM--GDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLI 221
            LFDLDGTLY +  GY + I  N++++M E  G     I     A+ +W+P+FDKY+ + RA   +G++ DSK  +Y +++R+  DK+ V D  L  FLES P    K +FTNA E  A E L  LGV+  F+ + G++ +  G  CKP+P+AF KV+  + ++  E                      +  FEDSFKNL A K LG +TV I
Sbjct:    1 LFDLDGTLYDHACGYEEEIHSNIFKFMVEMSGGKFNTITTVDEAQRVWQPMFDKYNLTKRALIGEGYVFDSK--YYDTFVRRGADKYFVKDDQLREFLESFPSEMKKVVFTNAPESSANEILNLLGVDDLFDHVLGTDFLDYGSICKPDPKAFTKVMNYLNVSPSEYH-------------------RVCYFEDSFKNLKAGKNLGFRTVFI 191          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|298712162|emb|CBJ33036.1| (HAD-superfamily hydrolase [Ectocarpus siliculosus])

HSP 1 Score: 142.124 bits (357), Expect = 1.746e-38
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 0
Query:   17 LFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLV-PDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLI 221
            LFDLDGTLY  +NGY  ++ +N+W +M + +GI    P K +WRPLF KY+QS +  +  G  +      +W+ +R     F+    P + + LE LP+   KY+FTN  E +A EALA LG+  HF+G+ G++ MG+ CKP+  AFE VL+++                      G      V+FEDSFKNL+ A  LGM TV +
Sbjct:    5 LFDLDGTLYPLDNGYHIHVRQNMWRFMSDKLGIEE--PEK-VWRPLFQKYNQSAKGLRVGGGYEFDLE-DFWTSVRAGAADFIKEAPPGVKSALEKLPQK-DKYVFTNCNEVEAEEALALLGIRHHFKGVIGAKAMGETCKPDKAAFEGVLQSV----------------------GADPAKTVMFEDSFKNLVTATSLGMATVFV 183          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|255074135|ref|XP_002500742.1| (predicted protein [Micromonas commoda] >gi|226516005|gb|ACO62000.1| predicted protein [Micromonas commoda])

HSP 1 Score: 137.887 bits (346), Expect = 8.681e-37
Identity = 81/205 (39.51%), Postives = 111/205 (54.15%), Query Frame = 0
Query:   17 LFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLI 221
            LFDLDGTLY  ENGY + + + ++E+M + + +     AK +W   F  Y+Q+ R+ + QG   +     YWS+IR D   FL  + D    L S P  C K++FTN  E+QA EAL  LG+E  F+G++G++ MGD CKPE  AFE V           R   E N               V FEDS KNL+ AK++G  TVL+
Sbjct:   14 LFDLDGTLYPIENGYEEKVRERVFEFMVDELKVSSVEQAKEMWWEHFKVYNQTLRSLR-QGMGFEFDREKYWSHIRGDPADFLQANFDALEMLRSFP-GCKKFVFTNCAEKQAIEALQVLGLEGEFDGVYGADFMGDVCKPERAAFEAVC---------ARAKIEPNGT-------------VFFEDSVKNLVTAKEMGFTTVLV 194          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|1199290019|gb|OUS45120.1| (HAD-superfamily hydrolase, subfamily [Ostreococcus tauri])

HSP 1 Score: 138.272 bits (347), Expect = 7.983e-36
Identity = 84/219 (38.36%), Postives = 110/219 (50.23%), Query Frame = 0
Query:    8 QGSRPR---WLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKH-CPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQL-GMKTVLI 221
            + S PR   W Y+FDLDGTLY  ENGY       ++EYM + +G      A+ IWR  F K++Q+ RA +  G+  D  +  YW+  R D  +FL P  +    L+++      + +FTN  E QAREAL  LG+E  F+G+FG+  MGD  KP   AFE+   A                      D       V FEDS KNL AA  L GM TVLI
Sbjct:   79 RTSHPRAMAWTYVFDLDGTLYDIENGYERRCRARVYEYMRDALGCESVARAEEIWREHFPKHNQTLRALRRAGY--DVDADAYWARTRGDPSEFLTPRAETRAMLDAIAATGGRRLVFTNCHERQAREALRALGIEDCFDGVFGAGGMGDEAKPSAGAFERFFHA---------------------HDVRDPTRCVFFEDSLKNLRAASSLFGMVTVLI 274          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|693496226|emb|CEG00750.1| (HAD-superfamily hydrolase, subfamily IA, variant 3 [Ostreococcus tauri])

HSP 1 Score: 135.576 bits (340), Expect = 1.190e-35
Identity = 80/210 (38.10%), Postives = 105/210 (50.00%), Query Frame = 0
Query:   14 WLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCP-KYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQL-GMKTVLI 221
            W Y+FDLDGTLY   NGY       ++EYM + +G      A+ IWR  F K++Q+ RA +  G+  D  +  YW+  R D  +FL P  +    L+++      + +FTN  E QAREAL  LG+E  F+G+FG+  MGD  KP   AFE+   A                      D       V FEDS KNL AA  L GM TVLI
Sbjct:    3 WTYVFDLDGTLYDIGNGYERRCRARVYEYMRDALGCESVARAEEIWREHFPKHNQTLRALRRAGY--DVDADAYWARTRGDPSEFLTPRAETRAMLDAIAATGGRRLVFTNCHERQAREALRALGIEDCFDGVFGAGGMGDEAKPSAGAFERFFHA---------------------HDVRDPTRCVFFEDSLKNLRAASSLFGMVTVLI 189          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|308813752|ref|XP_003084182.1| (HAD-superfamily hydrolase, subfamily (ISS) [Ostreococcus tauri])

HSP 1 Score: 134.806 bits (338), Expect = 1.564e-34
Identity = 82/217 (37.79%), Postives = 109/217 (50.23%), Query Frame = 0
Query:   10 SRPR---WLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKH-CPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQL-GMKTVLI 221
            S PR   W Y+FDLDGTLY   NGY       ++EYM + +G      A+ IWR  F K++Q+ RA +  G+  D+ +  YW+  R D  +FL P  +    L+++      + +FTN  E QAREAL  LG+E  F+G+FG+  MGD  KP   AFE+   A                      D       V FEDS +NL AA  L GM TVLI
Sbjct:   81 SHPRAMAWTYVFDLDGTLYDIGNGYERRCRARVYEYMRDALGCESVARAEEIWREHFPKHNQTLRALRRAGYDVDADA--YWARTRGDPSEFLTPRAETRAMLDAIAATGGRRLVFTNCHERQAREALRALGIEDCFDGVFGAGGMGDEAKPSAGAFERFFHA---------------------HDVRDPTRCVFFEDSLRNLRAASSLFGMVTVLI 274          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|145355806|ref|XP_001422140.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144582380|gb|ABP00457.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 131.339 bits (329), Expect = 8.569e-34
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 0
Query:   16 YLFDLDGTLYSNENGYRDNILKNLWEYMHEHM-GIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLP-KHCPKYIFTNAREEQAREALACLGVERHF-EGIFGSEHMGDHCKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQL-GMKTVLI 221
            Y+FDLDGTLY+  NGY     + ++E+M     G+     A+ +W   F +Y+Q+ RA +  G   +  +  YW + R D  + L P  D+  F+ESLP     KY+FTN  E QA EAL  LG+   F + +FG+  MG+ CKPE EAFEK      + + +  +                    V FEDS KNL AAK++ GM TVL+
Sbjct:   18 YVFDLDGTLYAIANGYEAACRRRVYEFMATRCAGVDDVAEARVVWEKWFKRYNQTLRALR-HGAGYEFDAAEYWRFTRGDAREHLAPSADVRAFVESLPGGRENKYVFTNCNETQALEALEALGLRDCFADRVFGAGGMGECCKPEREAFEKFFAFCGVDVADASE-------------------CVFFEDSLKNLRAAKEIFGMTTVLV 207          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|612391424|ref|XP_007511233.1| (unknown [Bathycoccus prasinos] >gi|424513209|emb|CCO66793.1| unknown [Bathycoccus prasinos])

HSP 1 Score: 125.176 bits (313), Expect = 1.808e-31
Identity = 75/236 (31.78%), Postives = 121/236 (51.27%), Query Frame = 0
Query:    4 VAAKQGSRPRWLYLFDLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHCPKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDHCKPEPEAFEKVLKAIP--LTLVEG--RDGREGNA-------------AEETGQDGWAGESIVLFEDSFKNLMAAK-QLGMKTVLI 221
            + A+  ++     LFDLDG LY  ENGY       ++E+M   +G      AK IW+  F K++Q+ ++ +  G +   K   YW + R D  + L PD  +   L  + K  PK++ TN  E +A++AL  L +   F+ ++G++ MGD CKP  EAF KVL+ +   +  ++G   DG + +              A E  Q+ +  + + +FEDS KNL++AK    +  VLI
Sbjct:    1 MGAQNTTKKVKFALFDLDGCLYPIENGYEHACRARVFEFMVSQLGYETIDKAKTIWKREFTKHNQTLKSLRELGHVRFKKET-YWEFTRGDCSQHLEPDEQVRECLRKMSKSFPKFVLTNCAETEAKQALERLNILDQFDYVYGADFMGDTCKPSKEAFGKVLRDVKRRMKAMDGVRSDGTDDDVHSVDEDDITEEEEANEGIQEPFDDDEVFMFEDSLKNLVSAKDNFNITGVLI 235          
BLAST of EWM29627.1 vs. NCBI_GenBank
Match: gi|303290292|ref|XP_003064433.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226454031|gb|EEH51338.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 123.25 bits (308), Expect = 6.848e-30
Identity = 80/238 (33.61%), Postives = 108/238 (45.38%), Query Frame = 0
Query:   19 DLDGTLYSNENGYRDNILKNLWEYMHEHMGIPRSTPAKHIWRPLFDKYHQSFRAFKAQGWIDDSKSGHYWSYIRKDVDKFLVPDPDLDTFLESLPKHC----------------------------------PKYIFTNAREEQAREALACLGVERHFEGIFGSEHMGDH-CKPEPEAFEKVLKAIPLTLVEGRDGREGNAAEETGQDGWAGESIVLFEDSFKNLMAAKQLGMKTVLI 221
            DLDGTLY+ ENGY     + L+E+M E +G+P    A+ +WRP F  ++QS +A +A G++ DS    YW+Y R D    L  + D   F ESL                                        ++ TN  E+Q  EALA L +  +F+ ++G+ HMGD   KP+ EAFE V+                      G  G        FEDS KNL AAK LGM TVL+
Sbjct:  108 DLDGTLYAIENGYELACRERLFEFMVERLGLPSKDAARELWRPHFATHNQSLKALRAAGFVVDSD--EYWAYTRGDASTHLGANDDAIAFFESLMTRRGEEEEEEEEEEEGGGEDAGGVGGDGRRRRMRRIKSSHVLTNCHEKQGAEALAVLRLSGYFDRVYGAGHMGDDLAKPQIEAFELVI----------------------GMAGIDPARTAFFEDSVKNLAAAKTLGMTTVLV 321          
The following BLAST results are available for this feature:
BLAST of EWM29627.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112199|gb|EWM29627.1|2.064e-167100.00HAD-like domain protein [Nannochloropsis gaditana][more]
gi|1072230539|gb|OEU15272.1|5.454e-3938.21HAD-like protein, partial [Fragilariopsis cylindru... [more]
gi|298712162|emb|CBJ33036.1|1.746e-3838.83HAD-superfamily hydrolase [Ectocarpus siliculosus][more]
gi|255074135|ref|XP_002500742.1|8.681e-3739.51predicted protein [Micromonas commoda] >gi|2265160... [more]
gi|1199290019|gb|OUS45120.1|7.983e-3638.36HAD-superfamily hydrolase, subfamily [Ostreococcus... [more]
gi|693496226|emb|CEG00750.1|1.190e-3538.10HAD-superfamily hydrolase, subfamily IA, variant 3... [more]
gi|308813752|ref|XP_003084182.1|1.564e-3437.79HAD-superfamily hydrolase, subfamily (ISS) [Ostreo... [more]
gi|145355806|ref|XP_001422140.1|8.569e-3437.14predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|612391424|ref|XP_007511233.1|1.808e-3131.78unknown [Bathycoccus prasinos] >gi|424513209|emb|C... [more]
gi|303290292|ref|XP_003064433.1|6.848e-3033.61predicted protein [Micromonas pusilla CCMP1545] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1024rna1024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications