rna10225, rna10225 (mRNA) Nannochloropsis gaditana

Overview
Namerna10225
Unique Namerna10225
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationKK037266.1:55645..56388 +

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Properties
Property NameValue
Productpotassium sodium efflux p-type atpase
Orig transcript idgnl|cribi|Naga_102662g1.545.mrna
Orig protein idgnl|cribi|Naga_102662g1.545
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:55645..56388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102662g1gene9929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10225rna10225-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20479.1cds10194Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10225 ID=rna10225|Name=rna10225|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGATGGTGATAGCCTCTGGAAAGTCAGAACCCTGCATAAACCAGTTGTT
GGATTCTACGAATAACGTACAGATAGATGTAAGGATGGAGATCATGGGCA
GCCTTCTTGGAAAGAGCTTAATTCGAGATCAACCTACTGAGTATTTTCGA
CCTTTGGAGATGACCATGAATTGCGTGCAGCTAGGAAAAACCTTGTCACG
CATAATTTCTTATTGTCTGGCGTATACATCTAGAGAACACTAA
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protein sequence of rna10225

>rna10225-protein ID=rna10225-protein|Name=rna10225|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
PSLPPFLPQEVALTVLARKGGLPPKEQASSLPSSPRFVAELPFDSVLKRM
SVVYGYPSAGSSPSTLRVMTKGAFESVWGISTSIRGKDGKKKKKADDDEH
LSEWDLKFWQSQVEHLAGKGLRVLAFAERIVEDEGEGGGEGGGRARTGRT
GSGGRRRWSSWASWACSTPLGPR
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mRNA from alignment at KK037266.1:55645..56388+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10225 ID=rna10225|Name=rna10225|organism=Nannochloropsis gaditana|type=mRNA|length=744bp|location=Sequence derived from alignment at KK037266.1:55645..56388+ (Nannochloropsis gaditana)
ccctccctccctcccttcctccctcaggaaGTTGCTCTGACCGTCCTAGC
CCGCAAAGGGGGGCTCCCGCCCAAGGAAcaggcttcctccctcccctcct
ctccccgcttTGTCGCCGAGTTACCCTTCGACAGCGTCTTGAAACGCATG
TCCGTTGTCTACGGGTATCCCTCCGccggttcctccccttcgaccCTGCG
GGTCATGACCAAGGGTGCTTTTGAAAGTGTCTGGGGCATCTCCACTTCTA
TTCGGGGAAAagacgggaaaaaaaagaaaaaggccgaCGACGACGAACAT
TTGAGCGAGTGGGACCTTAAGTTTTGGCAGAGCCAGGTCGAACAtttggc
gggaaaaggcTTGCGGGTCTTGGCCTTTGCGGAACGGATagtggaggatg
agggggagggcgggggcgaggggggggggagggcgaggacggggaggacc
gGGAgcggtgggagaaggagatggtcTTCTTGGGCCTCGTGGGCATGCTC
GACCCCCCTCGGCccgaggtagggagggagggagggagggagggagggag
ggagggagggaggtaagtAGGGCCGAAGATGGCTGTGCACCGTCCGTCTT
GTGATGCTTACATGGGTATTCGCGCCTTTTCCCAAGAATTCGAAGAATTC
GAGGATGACTAATCATTGATATTTGATACCAACAGACCATCGGCGCGGTT
CAGTCGTGCACGGAGGCCGGCATCGTCGtccggtggggagggag
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Coding sequence (CDS) from alignment at KK037266.1:55645..56388+

>rna10225 ID=rna10225|Name=rna10225|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at KK037266.1:55645..56388+ (Nannochloropsis gaditana)
ccctccctccctcccttcctccctcaggaaGTTGCTCTGACCGTCCTAGC
CCGCAAAGGGGGGCTCCCGCCCAAGGAAcaggcttcctccctcccctcct
ctccccgcttTGTCGCCGAGTTACCCTTCGACAGCGTCTTGAAACGCATG
TCCGTTGTCTACGGGTATCCCTCCGccggttcctccccttcgaccCTGCG
GGTCATGACCAAGGGTGCTTTTGAAAGTGTCTGGGGCATCTCCACTTCTA
TTCGGGGAAAagacgggaaaaaaaagaaaaaggccgaCGACGACGAACAT
TTGAGCGAGTGGGACCTTAAGTTTTGGCAGAGCCAGGTCGAACAtttggc
gggaaaaggcTTGCGGGTCTTGGCCTTTGCGGAACGGATagtggaggatg
agggggagggcgggggcgaggggggggggagggcgaggacggggaggacc
gGGAgcggtgggagaaggagatggtcTTCTTGGGCCTCGTGGGCATGCTC
GACCCCCCTCGGCccgaggtag
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Synonyms
Publications