rna10215, rna10215 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10215
Unique Name	rna10215
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1168
Alignment location	KK037266.1:22636..27452 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100382g3.7177.mrna
Orig protein id	gnl\|cribi\|Naga_100382g3.7177
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:22636..27452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100382g3	gene9918	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10215	rna10215-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20491.1	cds10184	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:22636..27452+
coding sequence from alignment at KK037266.1:22636..27452+

mRNA sequence

>rna10215 ID=rna10215|Name=rna10215|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp
GTGACCATATTGTTTGCTACATCGCCAATCTATCATGAATGGATTTGTCT
GGCCGAATTGTTTCAAATTCTGTATACAGCATAGCTAGGATGGCTTTCAA
GAGCTCATACTTCTCAACACCACCCTCTAAACCAGGACAAGAAATGTTTT
TCCGGAACACACGCCAATGCCTAGATCCTTAGCCGCCGTTAGTCGTCCAC
ATCGCCGCAGCAGCGACAACGAGGCTGAAGTGCATGGTTTTGAGGCGCTT
GTGGAGGCTGCCTGTGGTATCAGTGCAGAATCGCTAATAGAAAAATAACT
TTACTCGTTGAAGGTGCTGTCAAGCCCCCCTTGTTGTCAAGGTAGCTCCC
GGCTGAAGGCAACCTTTGAACGTCGATCTATTTGGCGCCGAAGGTATTTC
CCGAGAAGTACCGATCTACGACAAATCAACAAGCACACATGCCTGGCATG
GGCAGAGATCAGGCGGGACAATCCCCGTTTCCAGGTATAGCAGTAGGTGC
CTTTCCCTGTATTTGGCCGCAAAATGGCACGACGTCCCCTAAGATTGCCG
TGCCTGTCCACGCACGACACGCTTCCTCTGGACCCACCGAGAGGTTCAGG
CAGACAGACCCTCCCGAAGCCTATGGAAGTGAGGACGCATTTACACCGTT
CCTGTCCTCCTTTGCTCTGTTTATGGCCACCGCGACATCCTGCGTCGATG
CCTACGGGTCTATGCCCGGAGCAAATTGCTCTAACGTCTTATGGGCCACG
CTAGGAGTCAGTCCCATGCAGAGATCGGCCTCTGAATGAAAAACTTCCTT
CTCAATCTACATACCATCATGGTTCCGTGATCATGCCCAGTAAGTTGGAT
CTTCTCCACACCACACAATGCAGCGTGGCATCGGGGTGAGGAGCGTCATT
CCCAATGGCAAGGACAAGGGATCTTCGTTTCAGCGACCAAGGTGATATGC
AGGATAATGCGTGGATCGATGGAAGGGATCATTGTTATCTATAGCCATTG
GCAATATTTGGGCTCCTCCCGCCTCATACCAACCGTGCCTATCGAGAGGG
CACACTCGAGGTTTGCCAGTGTAATGACTACGTATGGCGGGCGGTGTTAG
GAATACTGAAGCCGGAAGGTATTAGCAAGTAAATGTACAGCAGCTTTAAC
AAGGACATTTCAAGAGCT

protein sequence of rna10215

>rna10215-protein ID=rna10215-protein|Name=rna10215|organism=Nannochloropsis gaditana|type=polypeptide|length=827bp
METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQ
FLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALK
VEAWELQYRGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEE
GPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVI
VASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLE
ALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLE
VSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETG
SLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVA
LQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSP
SGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLL
PADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKKSKISCARNEGK
AQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLP
QQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVK
DHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHRE
HHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSE
EIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGH
SPSPIPHSTTKVGTGLFLLSMAAAQRK

mRNA from alignment at KK037266.1:22636..27452+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10215 ID=rna10215|Name=rna10215|organism=Nannochloropsis gaditana|type=mRNA|length=4817bp|location=Sequence derived from alignment at KK037266.1:22636..27452+ (Nannochloropsis gaditana)
TTTCATTCAAAGATGTCCTCTGGCCTGCTATCATGCATGCTTACTTAGAT
ATGGTTGTGGCGTTGGTTTGGAAAGCTGTATGTCTGCGAACATCAAGCCA
AATGATTTGTCATCTGGCTACAAAGAATGCCCGATTATGGAAGATTCATC
CGGTCTACCGAGGCTACGAACTGAAAAAAAGAATCTGTGGGCTATATTGC
CGGACCGTCAATAGATTTAACCATTTGGTAGCTGATCAACCATGTACTTG
TATTGCGAGCGGGATAAATTGTATCTTGTGATGCTTGATCATACACATTT
TCCCCGTTAAAACAATGCAGATAACGCTACGCGACACGACATTCTATTAG
CTTTTTGCGGTTGCTTGCAGCCTTTcgttctcttctcccttgcTTTCAGG
CACGAATCATGAGAAAAAGCGATGGGAGCTGGCACGTCATACCTTACAGG
GGTATCTGCTGGAGAAAAGAATCTGGCGGTCTTGCCGGACTTTCGGTGGA
TGCATCCGCTTTCATGGTTGCTGACCACCCACTTGTATGCGTAGATCACG
AATGGGGTTGTGGTATGGTGTGGTACTTTATCGTCCGAGTACACTGGATA
CAGCAGAGCAGATTAAACTGCACAACGTGACATCGAGTATTTGGGCGCAT
GAGCGCAGCCTTCATTCCCTCGTTGCTCTTACTATATAGCACGAATTATG
TAGCCAAGAGATCTTCTATTAGGAACTTCCATCATGGACATGTTGTAAGT
TTTCGAACAAAAATGTTGTGATGAGTAAGTGAAGATAATACTACGGGGTC
GTCCCATTCGCGATAAAACGCGTGCGGTATCGCGTCATTGGATCGTACCA
TCACACCGCCCAATTGGCCGACCGACCCTAACAGACTGTCTATGAGTCTA
TTCTTCGGAGACAATGCGCGTAAGCCAGCGCGTTGGCTTTGAAATTCAAG
GCCTCGTACTCTTATTTCCTCATTGAGTCTTGTAGGGATACAGACGCGCG
CGGAAAAGACCTTTATATCTCTTTTcgctcctctctttctcagTCAGGAA
CGAAAGCGTTGTCGCACGATTGATCTGGTCTTGCCTCACGGAATGCATGG
CTATGAATTCCCGCGGAAAATTTCAAGACGTTCCTTCTTTGTCCAAGAAG
GAGGCTTGTGAGAAATGCTACGTTGCCAAGGTAATGTGTCCAAGCATGTC
CGGTgcttttttattttttgttcgtcgcggcggccgaggaggtaTTGTCA
ATCCGGGATTCGATCTCACACAAAGATAGACTACAACAACGAGATCaaca
cccttcccccctaccACTTGCTTATAGAGTAAATGCGACCTCAGCCTTCC
TTGCGAGAGGTACGTGTGAGAGagctggcgggggaggaaaacgGGGAAAT
ACTCTAAGCTACGGGCTTGAGAGGACCGTACTTCAGATTAAGGGCTAACT
GGGGTCTGCACGTGGACATAAGACCTTGCAGGCATAGACCTGTCATGCTA
GTCTTCCACACACATGTAGGCACGTTTTGTATCTTCCGGTGTCCCCCATT
GCTTGCTGGTCACCTTTCCTGTCTCTTTAGAGGATTCAGCTTGGGAAATA
TATTACCAACTTGGCTTTCCTGCACTCATCGCCATTACGGCGCATTACCT
TTCACCGCAGGTGCTTCCGCCTAAACTTACCTTGCCGGCCGCGGGCTCGT
GGATCTGTGGATGGGGGAAGTCGGAATGGAACCCGGGTTTGTCCCATTTC
TGCGTTGAAAGGTACGGCAATCGAAAGCGCAGGTTGGCCTCCACAGGAGT
CACTGCCCCAGCTAGGCGGGCATGGCAAAGTGCCGAGGACCGGCGAGGAC
GGCAGGCAATGGACAGAAAGGGGCAGTTACACCAGCACCGAGGCCGAtag
cgaggacggggaggaggatgcgggcGAGGGATGGCGACCCAAAGAGACGA
AAGCGTACCTTTGGAACTCTGCGTGGGGATTACTGCTGGAACGAGCACGC
TTAGACTTCCAGCGTAGCATGGAAACACAAGCTTTGGAAGAGGAATTATT
GACGAAAGGTCAGACCTCGGGAGCATCggcaagcgaggaggaggaggggg
acgggaaggggcagagcCTTTTAGGGACCATCCTGGAGCGGGTAGACAGG
CCCCGCATGGCTGAACAGTTCTTAGACGCCTTCCACGCGGtgcagaggcg
ggggaagataCACCgagaggggatggtgggTATGCTCCGTCATTGGAAGA
AGCTCTCTGACCTGGCTGGGGAGGATCTGACGCTCGGCATAGGCGCTGCC
ATTGCCAATGCGCTAAAAGTCGAGGCGTGGGAGCTGCAGTACCGCGGGGG
GGATACAGTCAAAAGATCCGAATCTTGGACCGGGGACAGCAGCCTCGGGA
TCATTCATACCCCCAACTCTTTCCAAGGGCGACTCTCATCGAAGCGGTTC
CCCACGACTGTCGAAGAAGGGCCTATGGGACtgctcttggaggaggagct
ggcggctGTGGAGGCCGGTGCCGCGCGACTCAAGgcgtctcccctcttcc
ggGAGCGCGACGACGGGTACACGGGCCTGCTGCTGATCGAGGTGGACCGA
ACGGAGGACCGAGTCATCGTCGCCAGCAATCAGGCCTACCTGGACGTCTT
CTTGGGCCCcggcttccttctctccgaGGGCCTGGCGCGGGGCTGCCTtg
agcccttcctcttcgcggCCTTTGTGGCCCATAGCGACAGAGACACCTGG
TTCCGCATGAACCTGGAGGCCCTCTGCTCGCCCCGCTTCCGGccagaaag
gggaaggaggagggacggggttCCTCGGCGAGAAAGGCTGCTGTACTCGG
AGTTCCTGAAGATCTTCAGTCGGGATGGTCACGTGCGTCTGTATTGGGCG
CGTCTCGCCCAGTTGGAGGTGAGcatgagggaaggggaagaggagaaaat
gcACTTCCTCTTGTGGATGGAACCGGTGCCCGCCTCCCGGTACATCACAG
ACCGCCCGGAGAAGACAACGCAGAGCAAGACCACACTCTTCCGGCAGCGG
CCTAGTGCGGAGACGGGGTCCTTATCGCGGGAAGCAAGGGAGGTCTGTGC
TTCGGTCGGTGAGGGTGAGGAGCTGGGGTGGAGGCCGTTGAAGCTGCAGG
ATTTTTccgagacggaggaaaagggggatgGGGCATCGTCGGGCTGCGGG
GAAAGACAGCAGGTCGCTCTTCAAAAGAGGAGCCCGCCAAGCTTATTCTT
TCCAGCCCTAGCCTCcgtacctctccctccgggaacctcccttccctctc
tcccgtcgAGCTGGACTGTAAACACCGACCAAACCAGGGCAGGGCCACCA
CCTGGTTTCCTGTCTCCGTCGGGCTTCCCAACGCCCCCTTTTCTATTTCG
GTCatactccccctcccaccccagcTCTCGTTATCCCTTGGACTCCCCCG
CATTCCCCATCTCTTCCACGCTCCCGGACATGTTTGAGATCAAGAGCGAC
TTCATCAAGGGTCTACTCCCCGCTGACCCTAAGACCGGGCTTGCGGGCAA
ATCACACGGAGAGAGCACGGTGACGAATCCTGTCGTCGATGTCAAGTGTA
AACATATAACAAAGCGAGAAATGCAGCGAAAGAAAAGTAAGATTTCATGC
GCGCGGAACGAGGGAAAGGCTCAAGGAGTCTTTCAAGTGACGGCCGAGCC
CAAGCACTCGCCAAAGCACCAcaaagagcagcagcaacaagaaCGACaac
tgcagcagcagcagcagcagcaacaacaagaACAACAAAATCATCATCAA
CAACAACCAGGGCtgccgcagcaacagcatATGTCCGTCTTCCCAATTTC
GAGATCATCGCAATACCTACCTTCCAGTATAGATATGaaaggggagatgg
agcagcAATACCAGAGGCATCCATCAATCTTTTTTCACACATATCAGGAT
CCTTGCTGGGGGGTAAAGGATCATCAGGTTTTTAGACAGACTCACCAGGG
GCATGACTTGAACGTCGATGCATCCATTCTTCCGCCTGTCGCGATGCTGA
ACGAGCAGCAGCTTGAcaagcagcaaaagcagctAATTCTTCGGCTCTTT
TCTCATGCTCATCGAGAGCATCATTATAAGCAGCATAAGCAGCATACTAC
ATACATAGAAAATCATGAAGCATGCTATCTTCCTTTGGATGGGCGGGAGC
GACGACATAATGCAGACGAAAATGAGGACCTTAGGGGAGCTTACCGGCAT
TGGGACATTCACTCGGAGGAAATCTATGACGATCATCTGCAACCTTACTT
GCAGAGGCAACTTCAACAACACGAGCAAGAGCATGGCTGGTCCACGTCTT
GTTGGCCACCCTCCACGCCATGGCAGGGTGGACAATCTCAACCGATCCAG
CAAGGAGAGCACGGGCACTCGCCTTCTCCGATACCACACTCTACAACCAA
GGTAGGGACTGGACTCTTCTTACTTAGCATGGCAGCCGCGCAGAGGAAGT
AAAATGTGTCATATAATGCTTCCGAGAAACATGGAGCGTGTCGGACGAGT
TGTAGAACTGTAAAAGGCAAGCTATGACGAGCAAGGAAATAAATCAGGTT
TGTAATAAGAATTTCTGTAATGTGCATTGTATTGCTCTAGGGGTTTTCTG
AAGTTAGCACAGGCACGCCATTGTCCAAAGATTGAACCAAGGGAATTGAA
TTAGATGAaagttagggttagggttaagGTTAGTAACCACGCATTTAAGA
TAAGAGATAAAGTCAAGATTAAGGTGAAGGTCATTTTTGGGATCAAAATT
AGTGTGGACGATCATCC

Coding sequence (CDS) from alignment at KK037266.1:22636..27452+

>rna10215 ID=rna10215|Name=rna10215|organism=Nannochloropsis gaditana|type=CDS|length=2484bp|location=Sequence derived from alignment at KK037266.1:22636..27452+ (Nannochloropsis gaditana)
ATGGAAACACAAGCTTTGGAAGAGGAATTATTGACGAAAGGTCAGACCTC
GGGAGCATCggcaagcgaggaggaggagggggacgggaaggggcagagcC
TTTTAGGGACCATCCTGGAGCGGGTAGACAGGCCCCGCATGGCTGAACAG
TTCTTAGACGCCTTCCACGCGGtgcagaggcgggggaagataCACCgaga
ggggatggtgggTATGCTCCGTCATTGGAAGAAGCTCTCTGACCTGGCTG
GGGAGGATCTGACGCTCGGCATAGGCGCTGCCATTGCCAATGCGCTAAAA
GTCGAGGCGTGGGAGCTGCAGTACCGCGGGGGGGATACAGTCAAAAGATC
CGAATCTTGGACCGGGGACAGCAGCCTCGGGATCATTCATACCCCCAACT
CTTTCCAAGGGCGACTCTCATCGAAGCGGTTCCCCACGACTGTCGAAGAA
GGGCCTATGGGACtgctcttggaggaggagctggcggctGTGGAGGCCGG
TGCCGCGCGACTCAAGgcgtctcccctcttccggGAGCGCGACGACGGGT
ACACGGGCCTGCTGCTGATCGAGGTGGACCGAACGGAGGACCGAGTCATC
GTCGCCAGCAATCAGGCCTACCTGGACGTCTTCTTGGGCCCcggcttcct
tctctccgaGGGCCTGGCGCGGGGCTGCCTtgagcccttcctcttcgcgg
CCTTTGTGGCCCATAGCGACAGAGACACCTGGTTCCGCATGAACCTGGAG
GCCCTCTGCTCGCCCCGCTTCCGGccagaaaggggaaggaggagggacgg
ggttCCTCGGCGAGAAAGGCTGCTGTACTCGGAGTTCCTGAAGATCTTCA
GTCGGGATGGTCACGTGCGTCTGTATTGGGCGCGTCTCGCCCAGTTGGAG
GTGAGcatgagggaaggggaagaggagaaaatgcACTTCCTCTTGTGGAT
GGAACCGGTGCCCGCCTCCCGGTACATCACAGACCGCCCGGAGAAGACAA
CGCAGAGCAAGACCACACTCTTCCGGCAGCGGCCTAGTGCGGAGACGGGG
TCCTTATCGCGGGAAGCAAGGGAGGTCTGTGCTTCGGTCGGTGAGGGTGA
GGAGCTGGGGTGGAGGCCGTTGAAGCTGCAGGATTTTTccgagacggagg
aaaagggggatgGGGCATCGTCGGGCTGCGGGGAAAGACAGCAGGTCGCT
CTTCAAAAGAGGAGCCCGCCAAGCTTATTCTTTCCAGCCCTAGCCTCcgt
acctctccctccgggaacctcccttccctctctcccgtcgAGCTGGACTG
TAAACACCGACCAAACCAGGGCAGGGCCACCACCTGGTTTCCTGTCTCCG
TCGGGCTTCCCAACGCCCCCTTTTCTATTTCGGTCatactccccctccca
ccccagcTCTCGTTATCCCTTGGACTCCCCCGCATTCCCCATCTCTTCCA
CGCTCCCGGACATGTTTGAGATCAAGAGCGACTTCATCAAGGGTCTACTC
CCCGCTGACCCTAAGACCGGGCTTGCGGGCAAATCACACGGAGAGAGCAC
GGTGACGAATCCTGTCGTCGATGTCAAGTGTAAACATATAACAAAGCGAG
AAATGCAGCGAAAGAAAAGTAAGATTTCATGCGCGCGGAACGAGGGAAAG
GCTCAAGGAGTCTTTCAAGTGACGGCCGAGCCCAAGCACTCGCCAAAGCA
CCAcaaagagcagcagcaacaagaaCGACaactgcagcagcagcagcagc
agcaacaacaagaACAACAAAATCATCATCAACAACAACCAGGGCtgccg
cagcaacagcatATGTCCGTCTTCCCAATTTCGAGATCATCGCAATACCT
ACCTTCCAGTATAGATATGaaaggggagatggagcagcAATACCAGAGGC
ATCCATCAATCTTTTTTCACACATATCAGGATCCTTGCTGGGGGGTAAAG
GATCATCAGGTTTTTAGACAGACTCACCAGGGGCATGACTTGAACGTCGA
TGCATCCATTCTTCCGCCTGTCGCGATGCTGAACGAGCAGCAGCTTGAca
agcagcaaaagcagctAATTCTTCGGCTCTTTTCTCATGCTCATCGAGAG
CATCATTATAAGCAGCATAAGCAGCATACTACATACATAGAAAATCATGA
AGCATGCTATCTTCCTTTGGATGGGCGGGAGCGACGACATAATGCAGACG
AAAATGAGGACCTTAGGGGAGCTTACCGGCATTGGGACATTCACTCGGAG
GAAATCTATGACGATCATCTGCAACCTTACTTGCAGAGGCAACTTCAACA
ACACGAGCAAGAGCATGGCTGGTCCACGTCTTGTTGGCCACCCTCCACGC
CATGGCAGGGTGGACAATCTCAACCGATCCAGCAAGGAGAGCACGGGCAC
TCGCCTTCTCCGATACCACACTCTACAACCAAGGTAGGGACTGGACTCTT
CTTACTTAGCATGGCAGCCGCGCAGAGGAAGTAA

Synonyms

Publications