EWM20491.1, cds10184 (CDS) Nannochloropsis gaditana

Overview
NameEWM20491.1
Unique Namecds10184
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:24654..27137 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20491.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100382g3.7177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:24654..27137 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of EWM20491.1 vs. NCBI_GenBank
Match: gi|585100154|gb|EWM20491.1| (hypothetical protein Naga_100382g3 [Nannochloropsis gaditana])

HSP 1 Score: 1704.88 bits (4414), Expect = 0.000e+0
Identity = 827/827 (100.00%), Postives = 827/827 (100.00%), Query Frame = 0
Query:    1 METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETGSLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSPSGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLLPADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKKSKISCARNEGKAQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLPQQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVKDHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHREHHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSEEIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGHSPSPIPHSTTKVGTGLFLLSMAAAQRK 827
            METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETGSLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSPSGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLLPADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKKSKISCARNEGKAQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLPQQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVKDHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHREHHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSEEIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGHSPSPIPHSTTKVGTGLFLLSMAAAQRK
Sbjct:    1 METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETGSLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSPSGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLLPADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKKSKISCARNEGKAQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLPQQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVKDHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHREHHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSEEIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGHSPSPIPHSTTKVGTGLFLLSMAAAQRK 827          
BLAST of EWM20491.1 vs. NCBI_GenBank
Match: gi|585104545|gb|EWM23477.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 511/830 (61.57%), Postives = 599/830 (72.17%), Query Frame = 0
Query:    1 METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQYRGGDTV-KRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKTTQSKTTLFRQRPSAETGSLSREAREVCASVGEGEELGWRPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPLPPGTSLPSLPSSWTVNTDQTRAGPPPGFLSPSGFPTPPFLFRSYSPSHPSSRYPLDSPAFPISSTLPDMFEIKSDFIKGLLPADPKTGLAGKSHGESTVTNPVVDVKCKHITKREMQRKK----SKISCARNEGKAQGVFQVTAEPKHSPKHHKEQQQQERQLQQQQQQQQQEQQNHHQQQPGLPQQQHMSVFPISRSSQYLPSSIDMKGEMEQQYQRHPSIFFHTYQDPCWGVKDHQVFRQTHQGHDLNVDASILPPVAMLNEQQLDKQQKQLILRLFSHAHREHHYKQHKQHTTYIENHEACYLPLDGRERRHNADENEDLRGAYRHWDIHSEEIYDDHLQPYLQRQLQQHEQEHGWSTSCWPPSTPWQGGQSQPIQQGEHGHSPSPIPHSTTKVGTGLFLLSMAAAQ 825
            M TQ   EE   K Q S ASAS+EEE DG GQSLL TILERVDR RMAE+FLDAFHAVQRRG +HREGMVGMLRHWKKLSDL+G+DLTLG+GAAIA A  VE WEL+YR  + V  RSES  G+ SLG   T NS QG+LSSKRF T V+EGP GLLLEE L AVEAGAARLKAS LFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCL+PFLFAAFVAHSDRDTWFRMNLEALCSPRFRPE G  R+GVP RERLLYSEFLKIFSRDGHVRLYWARLAQLE + REGEEEK+HFLLWMEPVPASRYITDRPEK T SKT LF++RP  + GS S           +GE +G RPL+ QD  E  +KG+G SSGCGERQQVA QK  PP L FPALASVPLPPG +LPS PSSWT++TDQ R G      SPS F  PP      SPS P + +  DS   P++STLP +FEIKS+FI+ LL    K+  A K+HG+ TVTN V+D +CK +T ++  R+     SKIS ++ + + + +F+ TA PKH P  H++QQ++++Q Q Q++QQQQ+QQ         PQ+Q M +FP S+SS  LPS + +  EMEQQ QRHP +F H +Q  C G +    F QT+Q +DLNV A +L P AM N+QQL+                EHH  Q       I NHEA Y    G +RR  A++ E  R  +++ D++S+E  ++H QP+L+RQ  QHE E G S SCWPPSTPWQ  QS+P QQ EH    S IPHS +++GTGLFLLSMAAAQ
Sbjct:  157 MGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHREGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVFNRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLLEE-LMAVEAGAARLKASSLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLDPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPEGGSSREGVPPRERLLYSEFLKIFSRDGHVRLYWARLAQLEATTREGEEEKLHFLLWMEPVPASRYITDRPEKATHSKTKLFKRRPHPKIGSSS------LTVAADGEMMGERPLE-QDVPEG-QKGNGDSSGCGERQQVAQQKSGPPILLFPALASVPLPPGVTLPSFPSSWTISTDQARTGRQAAAFSPSCF--PPLA----SPS-PFTLHSSDSSPQPLASTLPHIFEIKSEFIRDLLRTAHKSVPAAKAHGKDTVTNSVIDAECKRVTNKQKVRRNKFLLSKISRSQEQNEVREIFRTTAGPKHLPPQHEQQQEEQKQEQPQKRQQQQQQQQPPPPG--QPQEQQMPIFPFSKSSHCLPSGMSIGWEMEQQCQRHPLVFLHAHQKICSGGEHPPPFGQTNQEYDLNVGAFMLSPAAMSNDQQLN----------------EHHVTQ-------IRNHEAWYPASVGAKRRQYAEKQEHFRENFQYVDVNSQESNEEHRQPFLRRQF-QHELEQGCSMSCWPPSTPWQRVQSRPTQQEEHRQPLSSIPHSKSRLGTGLFLLSMAAAQ 944          
BLAST of EWM20491.1 vs. NCBI_GenBank
Match: gi|553187661|ref|XP_005854653.1| (hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526] >gi|422294410|gb|EKU21710.1| hypothetical protein NGA_0196000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 222.631 bits (566), Expect = 2.570e-63
Identity = 123/173 (71.10%), Postives = 134/173 (77.46%), Query Frame = 0
Query:    1 METQALEEELLTKGQTSGASASEEEEGDGKGQSLLGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDLTLGIGAAIANALKVEAWELQY-RGGDTVKRSESWTGDSSLGIIHTPNSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLK 172
            M TQ   EE   K Q S ASAS+EEE DG GQSLL TILERVDR RMAE+FLDAFHAVQRRG +HR GMVGMLRHWKKLSDL+G+DLTLG+GAAIA A  VE WEL+Y R    + RSES  G+ SLG   T NS QG+LSSKRF T V+EGP GLLL EEL AVEAGAARLK
Sbjct:   74 MGTQPSGEESPIKAQPSRASASKEEENDGDGQSLLETILERVDRSRMAEEFLDAFHAVQRRGTVHRGGMVGMLRHWKKLSDLSGQDLTLGVGAAIAKAFHVEQWELRYRRRNKVINRSESSAGNVSLGSTPTSNSSQGQLSSKRFLTAVKEGPRGLLL-EELMAVEAGAARLK 245          
BLAST of EWM20491.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 78.5666 bits (192), Expect = 1.958e-11
Identity = 95/404 (23.51%), Postives = 160/404 (39.60%), Query Frame = 0
Query:   35 LGTILERVDRPRMAEQFLDAFHAVQRRGKIHREGMVGMLRHWKKLSDLAGEDL--TLGIGAAIANALKVEAWELQYRGGDTVKRSESWTGDSSLGIIHTP-NSFQGRLSSKRFPTTVEEGPMGLLLEEELAAVEAGAARLKASPLFRERDDGYTGLLLIEVDRTEDRVIVASNQAYLDVFLGPGFLLSEGLARGCLEPFLFAAFVAHSDRDTWFRMNLEALCSPRFRPERGRRRDGVPRRERLLYSEFLKIFSRDGHVRLYWARLAQLEVSMREGEEEKMHFLLWMEPVPASRYITDRPEKT---------TQSKTTLFRQRPSAETGSL-SREAREVCASVGEGEELGW------RPLKLQDFSETEEKGDGASSGCGERQQVALQKRSPPSLFFPALASVPL 419
            L  ++ER D P M   +L AF  + + G ++R+  +G+L+ W  L  +   D   T G  A +  A ++   EL+               D        P ++ +GRL + R    + E                GA  L+ + + R+ ++    + +  +D  +  VI  SN+A+   F  P   + +   R CL  FLFAA VA  DR  +F++   A  S                   +  + FLKIF R G + LY   L+  +V ++ G  E     +  EP P SR++T RP+ T           S  ++FR      +G +  R+A +V        E+ W      R   +++            S        +   R+ P +  P +AS+P+
Sbjct:  173 LDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELE---------------DPECLAYEPPLHAEKGRLWAARADRVLGE----------------GAKHLEENLVCRQANNSSRAVYMARMDCKDQWVI--SNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFKLLHFATLSTSL----------------MKRTAFLKIFDRQGRMTLY---LSDHQV-VKMGPNEYASLCV-TEPAPPSRHVTTRPDVTRLRSTHHPCNSSSASMFR----VASGDMRRRQACDVSKQWSRAGEIRWPDDTTGRGADMREEKAFNVLRVSEESPASPTSTFSTMPRADPEMLVPCIASIPV 518          
The following BLAST results are available for this feature:
BLAST of EWM20491.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100154|gb|EWM20491.1|0.000e+0100.00hypothetical protein Naga_100382g3 [Nannochloropsi... [more]
gi|585104545|gb|EWM23477.1|0.000e+061.57Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|553187661|ref|XP_005854653.1|2.570e-6371.10hypothetical protein NGA_0196000, partial [Nannoch... [more]
gi|585100606|gb|EWM20744.1|1.958e-1123.51Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10215rna10215Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications