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Properties
| Property Name | Value |
|---|
| Product | silencing group b protein |
| Orig transcript id | gnl|cribi|Naga_100050g40.6854.mrna |
| Orig protein id | gnl|cribi|Naga_100050g40.6854 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:985980..987900 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1021 ID=rna1021|Name=rna1021|organism=Nannochloropsis gaditana|type=mRNA|length=1269bp
ATGCCCCTTTTCTGCTGGAGGCTCCTTCTCGTCTTTCAGCTGTTGCAGTA
CTCTGCTTTCTCGTGGAGTCACTCTACCTCCTCAAAGGTCACGCACCCGC
CACCGGTGCACAGTTGCGGCCGTGGCTCGCGCCCGCGCAACCAGGTTCAG
ATGACATCTTTGGAGCTGTGGGTGGACGTGAGAAATACCAAGGCATTCAT
TCCTCTGGGAGCGAGCCGCTGTTTGACCCATCACGCTCCCACTGAACCTT
TAGACGTTCCTTTCCTTGTAGAGGAGGAGGCGACAGGTCGCCTCCAGGAC
GATCATGAGAGGTTGGTGGGAGCAGTGTTGGCCATCACCAAGCCGGAGGA
CGTGACGAAGGCTATCAACCTTATTGGTAGTGTTGACTGGGTCGTGCTCG
ATGCATTCATCGACTGGATCCAAATACCATGCGAAAACGTCATCGCTGCA
GCCCAAGGCGGGCCGACCCGAGTATGCGTGGCGGTAGAAGACGCGGAGCA
GCTTTCCGGCGTGGCGTTCGCGTTGGAGACAGGAGTAGATGCCGTGTTGC
TGAAGCCTGGCCGCGACCAACTCTGGTCTCACGCGCGACGAGTACAGGCC
GAGAAGAATGAAAAAATTCTGCCGGCCTCGGAAGGCTCAGGTGCCCAAAC
CGTCTTCCCTAGCGCGGTAGGAAAGGAGCAAGAGCACGTGCAGCTCGTGC
CTGCCAAAGTGGCGGAGGTCGTGCCGGGGGGCGTGGGCGACAGGGTCTGC
TTGGACCTGGTGCAGCTTCTCAAGGTCGGGGAAGGCTGTCTTGTGGGTTC
GTCGGCCAAGGGACTGATCCTGGTGCAAGCCGAGGTCCTGGCGACCACCT
ACATAAACCCTCGGCCCTTCCGGATCAACGCCGGGCCCGTGCACTCCTAC
GTGTTGATGGAGGATGGGAGCGCCAAGTACCTGTCCGAGATCGAAGCGGG
AGACCGAGTCAGAGTGGTCAGTGCGGACGGGCACTCACGGGGAGTGACGG
TGGGCCGCTGCAAGATTGAAAGCCGACCGCTCTTGAAGGTGTCGTTTCAA
TGGCCGGCTGGGGGCGAGGGCGGGAACGAGGGAGGGACGCGAACAGCGCA
GATCTTTTTGCAGCAGGCAGAGACAGTCTGTCTGGTGCGCGGGACGGCGG
AGGGGGGCGGTTGCACGAGCGTGACGAGGCTGCGGGCAGGAGACATGGTG
GTGGTGAGGGCGCGGAGCCAGGGGACTCACCTGGGAAACGCCATAAAGGC
TCATGTGGAGGAGAAATGA back to topprotein sequence of rna1021 >rna1021-protein ID=rna1021-protein|Name=rna1021|organism=Nannochloropsis gaditana|type=polypeptide|length=490bp
MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGM
KASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNA
GNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAI
EACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKTGHV
SSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLY
LNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHPDERWQEEGEEGRE
VQEALVGSNGRRGRVKGPGSGGSGVIGSGFSVREEETAPLTQDSRGYFHL
SPGPSRRGGVEGGAAAMTPAFRPGGSGGRRGKLAGGRQSECLRGWNNRAL
IQAYPGSERPERESERFQGCQTEPPRTRRMGRGRRILQPALGRDGSGGRE
RGNFKRSTNARKDPLPCERRGTWDVECDGGHRQDGVVGVQ back to topmRNA from alignment at CM002456.1:985980..987900- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1021 ID=rna1021|Name=rna1021|organism=Nannochloropsis gaditana|type=mRNA|length=1921bp|location=Sequence derived from alignment at CM002456.1:985980..987900- (Nannochloropsis gaditana)
ATGTTGGGCCCCTCTTTAATGCGCCGAGAGCTATCGGCAAATCTCTTATT
TTTGTACTTGCTTCGGACCTCGGCTGCCGTAGTGACTCCGCCAGAACGCC
CAGCTTGGGCGCGGGGCTATGTGGCCTTCCATAAAGACAGGTCGGGAATG
AAGGCCTCTGCCACAGCTAGCGCCGCAGCTGGCAACGCGGCACACGATCA
GGGCCATTTTTTTACACGTTCCAGTCCTTTCGGTCGGGTCGACGGGTCTT
CAGCCGGCCGTAGCTCGCCCTCCAAAAGGGATCCTTGTGGAAGCAACGCC
GGGAATCATGTGAGCAGTTTGAGCAAGACGAGCCATAGCATCAGGACATC
GGCGTCAGCCAAGGCCTCATTGTACGCTGGAAACACCTTGGAAGTCGCCC
CGCCCCAAGTCTGCATCCGGACGGCGAGGCGGGAGGATATCCCCGCTATC
GAAGCCTGCAACCTGAAGACACTGCCCGAGAACTACCCGAACGCCTTTTA
TTACAACCACTTGCTACAGTGGCCGTACTTGGCTCTGGTAGCGGAGAGGC
AGACTCCTGCTCGCGGTGAGGGAGAGCGCGGTGCCGGGGCCGCGACCGAT
GCGGGCGAGATGGGGGGGGAGGGGAAGAAGATTGTGGGGTACGTGTTGGG
CCGCGTGGAGGTATCGAACCGGAGCCCTCCGGAGGGTGTCGGCACAGCCT
CGCAGCTGCAGGGGGACTATTTTCCAGGCGTAGGGCCCCCAAGCCCCCCC
CGTTCCCCCCCTCCTCCTCACCCGGCGCTCCCGCCCCGGCCTCCACCCCC
CTTGGAGGGGCCGCGGCCGCAGCTGGCGCCTACCCGGGACGGAAAACGGG
CCACGTCTCGTCTCTGGCTGTACTGGACGACTTTCGCCGTCTGGGTATTG
CACGGGAGCTGATGGAAATCTTGCACGTGCAGATGAAGTTCCGGTATGGG
GTGGACTGTAGCACCCTCCACGTCCGGTGCAGCAACCGGGGGGCGCAGAA
GCTCTACTTGAACTCGCTGGGCTACCGCGTGGTGGAGACGGTTCAGAAAT
ATTACCAAGACGGCGCGGACGCCTACTACATGAAGCTGAATTTCCGCCCG
TCCGCGGACCAGCATCCAGATGAGCGGTGGCAGGAGGAGGGCGAGGAAGG
GAGGGAGGTGCAGGAGGCATTGGTGGGGTCGAACGGTCGGCGGGGCCGTG
TCAAGGGCCCGGGCAGTGGCGGAAGTGGTGTCATCGGCAGCGGTTTTAGC
GTGCGGGAGGAAGAGACAGCTCCCTTGACTCAGGACAGCCGAGGGTACTT
TCATCTCAGCCCGGGCCCGTCTAGGAGGGGCGGGGTAGAGGGAGGAGCGG
CGGCGATGGTGGGTGGTGCTTCCCGCTGAGTGTAATTGAAGAGTTGGATA
AAACGAATGCGGCATAAATTTGATAAAGACGTGTAATCTTGACAAGAGTA
AATACAATCCACCCTCTGACAGGCCGCGAGGCTCAGAGCTAGACTCCGGC
TTTTCGGCCAGGGGGGTCTGGAGGCCGTCGTGGGAAGTTGGCGGGGGGTC
GACAGAGCGAGTGCCTGAGGGGTTGGAACAATAGGGCTCTTATACAGGCA
TGTAAAGCTTAGAAAAGGACTGAGGGAGCACACGGTGTGTCCCTCTCTTC
GCGGGCAGATCCCGGGTCCGAGCGGCCCGAGAGAGAAAGCGAGCGGTTCC
AAGGATGCCAAACGGAGCCGCCTCGGACTCGGAGGATGGGAAGGGGAAGG
AGGATCCTGCAGCCAGCGCTTGGGAGGGACGGATCGGGAGGCAGAGAGAG
GGGCAATTTTAAGCGGTCCACAAATGCGAGAAAAGACCCGCTCCCTTGTG
AGAGGAGGGGCACGTGGGATGTAGAGTGTGACGGAGGACATAGACAAGAC
GGAGTGGTGGGCGTGCAATAA back to topCoding sequence (CDS) from alignment at CM002456.1:985980..987900- >rna1021 ID=rna1021|Name=rna1021|organism=Nannochloropsis gaditana|type=CDS|length=5892bp|location=Sequence derived from alignment at CM002456.1:985980..987900- (Nannochloropsis gaditana)
ATCCCGGGTCCGAGCGGCCCGAGAGAGAAAGCGAGCGGTTCCAAGGATGC
CAAACGGAGCCGCCTCGGACTCGGAGGATGGGAAGGGGAAGGAGGATCCT
GCAGCCAGCGCTTGGGAGGGACGGATCGGGAGGCAGAGAGAGGGGCAATT
TTAAGCGGTCCACAAATGCGAGAAAAGACCCGCTCCCTTGTGAGAGGAGG
GGCACGTGGGATGTAGAGTGTGACGGAGGACATAGACAAGACGGAGTGGT
GGGCGTGCAATAAACTCCGGCTTTTCGGCCAGGGGGGTCTGGAGGCCGTC
GTGGGAAGTTGGCGGGGGGTCGACAGAGCGAGTGCCTGAGGGGTTGGAAC
AATAGGGCTCTTATACAGGCATCTGGCGCCTACCCGGGACGGAAAACGGG
CCACGTCTCGTCTCTGGCTGTACTGGACGACTTTCGCCGTCTGGGTATTG
CACGGGAGCTGATGGAAATCTTGCACGTGCAGATGAAGTTCCGGTATGGG
GTGGACTGTAGCACCCTCCACGTCCGGTGCAGCAACCGGGGGGCGCAGAA
GCTCTACTTGAACTCGCTGGGCTACCGCGTGGTGGAGACGGTTCAGAAAT
ATTACCAAGACGGCGCGGACGCCTACTACATGAAGCTGAATTTCCGCCCG
TCCGCGGACCAGCATCCAGATGAGCGGTGGCAGGAGGAGGGCGAGGAAGG
GAGGGAGGTGCAGGAGGCATTGGTGGGGTCGAACGGTCGGCGGGGCCGTG
TCAAGGGCCCGGGCAGTGGCGGAAGTGGTGTCATCGGCAGCGGTTTTAGC
GTGCGGGAGGAAGAGACAGCTCCCTTGACTCAGGACAGCCGAGGGTACTT
TCATCTCAGCCCGGGCCCGTCTAGGAGGGGCGGGGTAGAGGGAGGAGCGG
CGGCGATGATGTTGGGCCCCTCTTTAATGCGCCGAGAGCTATCGGCAAAT
CTCTTATTTTTGTACTTGCTTCGGACCTCGGCTGCCGTAGTGACTCCGCC
AGAACGCCCAGCTTGGGCGCGGGGCTATGTGGCCTTCCATAAAGACAGGT
CGGGAATGAAGGCCTCTGCCACAGCTAGCGCCGCAGCTGGCAACGCGGCA
CACGATCAGGGCCATTTTTTTACACGTTCCAGTCCTTTCGGTCGGGTCGA
CGGGTCTTCAGCCGGCCGTAGCTCGCCCTCCAAAAGGGATCCTTGTGGAA
GCAACGCCGGGAATCATGTGAGCAGTTTGAGCAAGACGAGCCATAGCATC
AGGACATCGGCGTCAGCCAAGGCCTCATTGTACGCTGGAAACACCTTGGA
AGTCGCCCCGCCCCAAGTCTGCATCCGGACGGCGAGGCGGGAGGATATCC
CCGCTATCGAAGCCTGCAACCTGAAGACACTGCCCGAGAACTACCCGAAC
GCCTTTTATTACAACCACTTGCTACAGTGGCCGTACTTGGCTCTGGTAGC
GGAGAGGCAGACTCCTGCTCGCGATCCCGGGTCCGAGCGGCCCGAGAGAG
AAAGCGAGCGGTTCCAAGGATGCCAAACGGAGCCGCCTCGGACTCGGAGG
ATGGGAAGGGGAAGGAGGATCCTGCAGCCAGCGCTTGGGAGGGACGGATC
GGGAGGCAGAGAGAGGGGCAATTTTAAGCGGTCCACAAATGCGAGAAAAG
ACCCGCTCCCTTGTGAGAGGAGGGGCACGTGGGATGTAGAGTGTGACGGA
GGACATAGACAAGACGGAGTGGTGGGCGTGCAATAAACTCCGGCTTTTCG
GCCAGGGGGGTCTGGAGGCCGTCGTGGGAAGTTGGCGGGGGGTCGACAGA
GCGAGTGCCTGAGGGGTTGGAACAATAGGGCTCTTATACAGGCATCTGGC
GCCTACCCGGGACGGAAAACGGGCCACGTCTCGTCTCTGGCTGTACTGGA
CGACTTTCGCCGTCTGGGTATTGCACGGGAGCTGATGGAAATCTTGCACG
TGCAGATGAAGTTCCGGTATGGGGTGGACTGTAGCACCCTCCACGTCCGG
TGCAGCAACCGGGGGGCGCAGAAGCTCTACTTGAACTCGCTGGGCTACCG
CGTGGTGGAGACGGTTCAGAAATATTACCAAGACGGCGCGGACGCCTACT
ACATGAAGCTGAATTTCCGCCCGTCCGCGGACCAGCATCCAGATGAGCGG
TGGCAGGAGGAGGGCGAGGAAGGGAGGGAGGTGCAGGAGGCATTGGTGGG
GTCGAACGGTCGGCGGGGCCGTGTCAAGGGCCCGGGCAGTGGCGGAAGTG
GTGTCATCGGCAGCGGTTTTAGCGTGCGGGAGGAAGAGACAGCTCCCTTG
ACTCAGGACAGCCGAGGGTACTTTCATCTCAGCCCGGGCCCGTCTAGGAG
GGGCGGGGTAGAGGGAGGAGCGGCGGCGATGATGTTGGGCCCCTCTTTAA
TGCGCCGAGAGCTATCGGCAAATCTCTTATTTTTGTACTTGCTTCGGACC
TCGGCTGCCGTAGTGACTCCGCCAGAACGCCCAGCTTGGGCGCGGGGCTA
TGTGGCCTTCCATAAAGACAGGTCGGGAATGAAGGCCTCTGCCACAGCTA
GCGCCGCAGCTGGCAACGCGGCACACGATCAGGGCCATTTTTTTACACGT
TCCAGTCCTTTCGGTCGGGTCGACGGGTCTTCAGCCGGCCGTAGCTCGCC
CTCCAAAAGGGATCCTTGTGGAAGCAACGCCGGGAATCATGTGAGCAGTT
TGAGCAAGACGAGCCATAGCATCAGGACATCGGCGTCAGCCAAGGCCTCA
TTGTACGCTGGAAACACCTTGGAAGTCGCCCCGCCCCAAGTCTGCATCCG
GACGGCGAGGCGGGAGGATATCCCCGCTATCGAAGCCTGCAACCTGAAGA
CACTGCCCGAGAACTACCCGAACGCCTTTTATTACAACCACTTGCTACAG
TGGCCGTACTTGGCTCTGGTAGCGGAGAGGCAGACTCCTGCTCGCGATCC
CGGGTCCGAGCGGCCCGAGAGAGAAAGCGAGCGGTTCCAAGGATGCCAAA
CGGAGCCGCCTCGGACTCGGAGGATGGGAAGGGGAAGGAGGATCCTGCAG
CCAGCGCTTGGGAGGGACGGATCGGGAGGCAGAGAGAGGGGCAATTTTAA
GCGGTCCACAAATGCGAGAAAAGACCCGCTCCCTTGTGAGAGGAGGGGCA
CGTGGGATGTAGAGTGTGACGGAGGACATAGACAAGACGGAGTGGTGGGC
GTGCAATAAACTCCGGCTTTTCGGCCAGGGGGGTCTGGAGGCCGTCGTGG
GAAGTTGGCGGGGGGTCGACAGAGCGAGTGCCTGAGGGGTTGGAACAATA
GGGCTCTTATACAGGCATCTGGCGCCTACCCGGGACGGAAAACGGGCCAC
GTCTCGTCTCTGGCTGTACTGGACGACTTTCGCCGTCTGGGTATTGCACG
GGAGCTGATGGAAATCTTGCACGTGCAGATGAAGTTCCGGTATGGGGTGG
ACTGTAGCACCCTCCACGTCCGGTGCAGCAACCGGGGGGCGCAGAAGCTC
TACTTGAACTCGCTGGGCTACCGCGTGGTGGAGACGGTTCAGAAATATTA
CCAAGACGGCGCGGACGCCTACTACATGAAGCTGAATTTCCGCCCGTCCG
CGGACCAGCATCCAGATGAGCGGTGGCAGGAGGAGGGCGAGGAAGGGAGG
GAGGTGCAGGAGGCATTGGTGGGGTCGAACGGTCGGCGGGGCCGTGTCAA
GGGCCCGGGCAGTGGCGGAAGTGGTGTCATCGGCAGCGGTTTTAGCGTGC
GGGAGGAAGAGACAGCTCCCTTGACTCAGGACAGCCGAGGGTACTTTCAT
CTCAGCCCGGGCCCGTCTAGGAGGGGCGGGGTAGAGGGAGGAGCGGCGGC
GATGATGTTGGGCCCCTCTTTAATGCGCCGAGAGCTATCGGCAAATCTCT
TATTTTTGTACTTGCTTCGGACCTCGGCTGCCGTAGTGACTCCGCCAGAA
CGCCCAGCTTGGGCGCGGGGCTATGTGGCCTTCCATAAAGACAGGTCGGG
AATGAAGGCCTCTGCCACAGCTAGCGCCGCAGCTGGCAACGCGGCACACG
ATCAGGGCCATTTTTTTACACGTTCCAGTCCTTTCGGTCGGGTCGACGGG
TCTTCAGCCGGCCGTAGCTCGCCCTCCAAAAGGGATCCTTGTGGAAGCAA
CGCCGGGAATCATGTGAGCAGTTTGAGCAAGACGAGCCATAGCATCAGGA
CATCGGCGTCAGCCAAGGCCTCATTGTACGCTGGAAACACCTTGGAAGTC
GCCCCGCCCCAAGTCTGCATCCGGACGGCGAGGCGGGAGGATATCCCCGC
TATCGAAGCCTGCAACCTGAAGACACTGCCCGAGAACTACCCGAACGCCT
TTTATTACAACCACTTGCTACAGTGGCCGTACTTGGCTCTGGTAGCGGAG
AGGCAGACTCCTGCTCGCGATCCCGGGTCCGAGCGGCCCGAGAGAGAAAG
CGAGCGGTTCCAAGGATGCCAAACGGAGCCGCCTCGGACTCGGAGGATGG
GAAGGGGAAGGAGGATCCTGCAGCCAGCGCTTGGGAGGGACGGATCGGGA
GGCAGAGAGAGGGGCAATTTTAAGCGGTCCACAAATGCGAGAAAAGACCC
GCTCCCTTGTGAGAGGAGGGGCACGTGGGATGTAGAGTGTGACGGAGGAC
ATAGACAAGACGGAGTGGTGGGCGTGCAATAAACTCCGGCTTTTCGGCCA
GGGGGGTCTGGAGGCCGTCGTGGGAAGTTGGCGGGGGGTCGACAGAGCGA
GTGCCTGAGGGGTTGGAACAATAGGGCTCTTATACAGGCATCTGGCGCCT
ACCCGGGACGGAAAACGGGCCACGTCTCGTCTCTGGCTGTACTGGACGAC
TTTCGCCGTCTGGGTATTGCACGGGAGCTGATGGAAATCTTGCACGTGCA
GATGAAGTTCCGGTATGGGGTGGACTGTAGCACCCTCCACGTCCGGTGCA
GCAACCGGGGGGCGCAGAAGCTCTACTTGAACTCGCTGGGCTACCGCGTG
GTGGAGACGGTTCAGAAATATTACCAAGACGGCGCGGACGCCTACTACAT
GAAGCTGAATTTCCGCCCGTCCGCGGACCAGCATCCAGATGAGCGGTGGC
AGGAGGAGGGCGAGGAAGGGAGGGAGGTGCAGGAGGCATTGGTGGGGTCG
AACGGTCGGCGGGGCCGTGTCAAGGGCCCGGGCAGTGGCGGAAGTGGTGT
CATCGGCAGCGGTTTTAGCGTGCGGGAGGAAGAGACAGCTCCCTTGACTC
AGGACAGCCGAGGGTACTTTCATCTCAGCCCGGGCCCGTCTAGGAGGGGC
GGGGTAGAGGGAGGAGCGGCGGCGATGATGTTGGGCCCCTCTTTAATGCG
CCGAGAGCTATCGGCAAATCTCTTATTTTTGTACTTGCTTCGGACCTCGG
CTGCCGTAGTGACTCCGCCAGAACGCCCAGCTTGGGCGCGGGGCTATGTG
GCCTTCCATAAAGACAGGTCGGGAATGAAGGCCTCTGCCACAGCTAGCGC
CGCAGCTGGCAACGCGGCACACGATCAGGGCCATTTTTTTACACGTTCCA
GTCCTTTCGGTCGGGTCGACGGGTCTTCAGCCGGCCGTAGCTCGCCCTCC
AAAAGGGATCCTTGTGGAAGCAACGCCGGGAATCATGTGAGCAGTTTGAG
CAAGACGAGCCATAGCATCAGGACATCGGCGTCAGCCAAGGCCTCATTGT
ACGCTGGAAACACCTTGGAAGTCGCCCCGCCCCAAGTCTGCATCCGGACG
GCGAGGCGGGAGGATATCCCCGCTATCGAAGCCTGCAACCTGAAGACACT
GCCCGAGAACTACCCGAACGCCTTTTATTACAACCACTTGCTACAGTGGC
CGTACTTGGCTCTGGTAGCGGAGAGGCAGACTCCTGCTCGCG back to top
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