EWM29631.1, cds1020 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|585112203|gb|EWM29631.1| (silencing group b protein [Nannochloropsis gaditana]) HSP 1 Score: 1002.28 bits (2590), Expect = 0.000e+0 Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0
Query: 1 MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHPDERWQEEGEEGREVQEALVGSNGRRGRVKGPGSGGSGVIGSGFSVREEETAPLTQDSRGYFHLSPGPSRRGGVEGGAAAMTPAFRPGGSGGRRGKLAGGRQSECLRGWNNRALIQAYPGSERPERESERFQGCQTEPPRTRRMGRGRRILQPALGRDGSGGRERGNFKRSTNARKDPLPCERRGTWDVECDGGHRQDGVVGVQ 490
MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHPDERWQEEGEEGREVQEALVGSNGRRGRVKGPGSGGSGVIGSGFSVREEETAPLTQDSRGYFHLSPGPSRRGGVEGGAAAMTPAFRPGGSGGRRGKLAGGRQSECLRGWNNRALIQAYPGSERPERESERFQGCQTEPPRTRRMGRGRRILQPALGRDGSGGRERGNFKRSTNARKDPLPCERRGTWDVECDGGHRQDGVVGVQ
Sbjct: 1 MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHPDERWQEEGEEGREVQEALVGSNGRRGRVKGPGSGGSGVIGSGFSVREEETAPLTQDSRGYFHLSPGPSRRGGVEGGAAAMTPAFRPGGSGGRRGKLAGGRQSECLRGWNNRALIQAYPGSERPERESERFQGCQTEPPRTRRMGRGRRILQPALGRDGSGGRERGNFKRSTNARKDPLPCERRGTWDVECDGGHRQDGVVGVQ 490
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|553193234|ref|XP_005855738.1| (n-acetyltransferase subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422293320|gb|EKU20620.1| n-acetyltransferase subunit, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 385.956 bits (990), Expect = 2.128e-130 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPAR 188
MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPAR
Sbjct: 1 MLGPSLMRRELSANLLFLYLLRTSAAVVTPPERPAWARGYVAFHKDRSGMKASATASAAAGNAAHDQGHFFTRSSPFGRVDGSSAGRSSPSKRDPCGSNAGNHVSSLSKTSHSIRTSASAKASLYAGNTLEVAPPQVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPAR 188
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|224009141|ref|XP_002293529.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220970929|gb|EED89265.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 139.813 bits (351), Expect = 5.601e-36 Identity = 69/143 (48.25%), Postives = 84/143 (58.74%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNF 279
+ R AR+ DIP I+ NL TLPENY N FY NH+ +WP L LVAE G R GHV+SLAV RRLGIA L+ LH + Y + LHVR SN A KLY+ LGY V + + YY DG DAY+M+ +F
Sbjct: 1 ITFRLARKSDIPQIQKVNLATLPENYNNNFYINHMREWPELCLVAEHIVGYVLGKVETRPLGHVTSLAVHSHARRLGIASSLLHQLHFHLNSCYNANSVGLHVRISNSAAVKLYIEHLGYDVADIIPMYYGDGEDAYFMRKDF 143
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|676391387|ref|XP_009038971.1| (putative N-acetyltransferase activity [Aureococcus anophagefferens] >gi|323450515|gb|EGB06396.1| putative N-acetyltransferase activity [Aureococcus anophagefferens]) HSP 1 Score: 130.568 bits (327), Expect = 6.660e-32 Identity = 76/159 (47.80%), Postives = 94/159 (59.12%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVA---------------ERQTPARAGAYPGRKT-GHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNF 279
+CIR AR +DIP I+ CN +LPENY ++FY HL W +LA VA ER T AG R T GH++SLAV D FRR G+A++LM +H +M+ V S LHVRCSN GA +LY SLGY VV+ VQ YY DG AY M +
Sbjct: 1 MCIRRARADDIPQIQVCNRASLPENYNDSFYARHLADWGHLAFVADADREVVGYVLGRVNERHTETPAGPGSTRPTEGHITSLAVSDRFRRRGVAKQLMVAVHDEMEKL--VQTSKLHVRCSNAGALQLY-ASLGYAVVDVVQGYYHDGEAAYLMAADL 156
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|545707618|ref|XP_005706123.1| (N-acetyltransferase [Galdieria sulphuraria] >gi|452822585|gb|EME29603.1| N-acetyltransferase [Galdieria sulphuraria]) HSP 1 Score: 125.946 bits (315), Expect = 1.503e-30 Identity = 67/152 (44.08%), Postives = 88/152 (57.89%), Query Frame = 0
Query: 136 QVCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKT-------GHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFR 280
V IR A ED+ A++ CNL LPENY +Y HLL WP L VAE G + GH++SLAVL +R+LGIAR+LME H +M+ +G +LHVR +N AQ LY+ SL Y++ + KYY DG DAY M+ F+
Sbjct: 1 MVNIRRATPEDLFAMQTCNLLCLPENYQFKYYLYHLLSWPQLLFVAENFDKKIVGYVLAKMEEDAVEPHGHITSLAVLRHYRKLGIARKLMEAAHREMQVLFGAVYCSLHVRVTNVAAQHLYMESLSYQIHDVEAKYYADGEDAYDMRCIFK 152
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|168059517|ref|XP_001781748.1| (predicted protein [Physcomitrella patens] >gi|162666750|gb|EDQ53396.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 125.176 bits (313), Expect = 5.241e-30 Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKT-------GHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRP 281
VCIR A +D+ A+++CNL LPENY +Y+ H+L WP L VAE G + GH++SLAVL R+LG+A +LM M+ +G + +LHVR SNR A LY +LGYR+ + KYY DG DAY M+ +P
Sbjct: 2 VCIRQATVDDLLAMQSCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEDAEECHGHITSLAVLRTHRKLGLATKLMTAAQQCMQEVFGAEYVSLHVRKSNRAAFHLYTETLGYRITDVEAKYYADGEDAYDMRKTLKP 153
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|1035941163|gb|OAY67317.1| (N-alpha-acetyltransferase 10 [Ananas comosus]) HSP 1 Score: 125.946 bits (315), Expect = 6.564e-30 Identity = 68/159 (42.77%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKT--------GHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHP 287
VCIR A ED+ A++ACNL LPENY +Y H+L WP L VAE G + GH++SLAVL R+LG+A +LM M+ +G D +LHVR SNR A LY ++LGY++ + KYY DG DAY M+ + R Q P
Sbjct: 2 VCIRQATVEDLLAMQACNLMCLPENYQMKYYLYHILSWPQLLFVAEDYGSKIVGYVLAKMEEDASEPCHGHITSLAVLRTHRKLGLATKLMTAAQNAMESVFGADYVSLHVRRSNRAAINLYTSTLGYKIHDVEAKYYADGEDAYDMRKHLRGRQLQQP 160
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|1147622600|ref|XP_020079681.1| (N-alpha-acetyltransferase daf-31-like [Ananas comosus]) HSP 1 Score: 125.561 bits (314), Expect = 9.407e-30 Identity = 68/159 (42.77%), Postives = 88/159 (55.35%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAYPGRKT--------GHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHP 287
VCIR A ED+ A++ACNL LPENY +Y H+L WP L VAE G + GH++SLAVL R+LG+A +LM M+ +G D +LHVR SNR A LY ++LGY++ + KYY DG DAY M+ R Q P
Sbjct: 2 VCIRQATVEDLLAMQACNLMCLPENYQMKYYLYHILSWPQLLFVAEDYGSKIVGYVLAKMEEDASEPCHGHITSLAVLRTHRKLGLATKLMTAAQNAMESVFGADYVSLHVRRSNRAAINLYTSTLGYKIHDVEAKYYADGEDAYDMRKQLRGRQLQQP 160
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|597998489|ref|XP_007334014.1| (hypothetical protein AGABI1DRAFT_80054 [Agaricus bisporus var. burnettii JB137-S8] >gi|409074926|gb|EKM75313.1| hypothetical protein AGABI1DRAFT_80054 [Agaricus bisporus var. burnettii JB137-S8]) HSP 1 Score: 123.635 bits (309), Expect = 1.074e-29 Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 0
Query: 139 IRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAERQTPARAGAY------------PGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQH 286
+R AR ED+ ++A NL+ LPENY F+ HL+ WP L+ VAE G G GHV+S++VL ++RRLGIAR++M + M+ YG +LHVR SN+ A LY +LG+ V + +KYY DG DA YM+L F P +Q+
Sbjct: 3 VRLARAEDLIGMQASNLQNLPENYTMRFWIYHLMSWPQLSYVAEDHKGRIVGYVLSKIDEPDEDNPEGETHGHVNSISVLREYRRLGIARKMMLLSQDAMEKIYGAAYCSLHVRKSNKAAIALYKETLGFEVAKVEKKYYGDGEDALYMRLYFDPEENQN 162
BLAST of EWM29631.1 vs. NCBI_GenBank
Match: gi|545375208|ref|XP_005651809.1| (acyl-CoA N-acyltransferase [Coccomyxa subellipsoidea C-169] >gi|384253791|gb|EIE27265.1| acyl-CoA N-acyltransferase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 124.79 bits (312), Expect = 1.243e-29 Identity = 73/196 (37.24%), Postives = 101/196 (51.53%), Query Frame = 0
Query: 137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAER-------QTPARAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFRPSADQHPDERWQEEGEEGREVQEALVGSNGRRGRVK---GPGSGG 322
VCIR+A ED+ A++ CNL LPENY +Y+ H+L WP L VAE A+ GH++SLAV R+LG+A +LME H M+ +G ++LHVR N+GA LY +LGY++ + YY DG DAY M+ +PS+ AL +NG G+ K G +GG
Sbjct: 2 VCIRSATMEDLLAMQRCNLLCLPENYQLKYYFYHILSWPQLLFVAEECNGKIVGYVLAKMEEEAAETHGHITSLAVARTHRKLGVATKLMEAAHRAMEEVFGSVYASLHVRVMNKGAFHLYTQTLGYQIHDREPHYYADGEDAYDMRKYLKPSS--------------------ALAAANGTSGKAKQEDGKQAGG 177 The following BLAST results are available for this feature:
BLAST of EWM29631.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|