rna1018, rna1018 (mRNA) Nannochloropsis gaditana

Overview
Namerna1018
Unique Namerna1018
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1536
Alignment locationCM002456.1:981197..982130 +

Link to JBrowse

Properties
Property NameValue
Productprotein mis18-alpha
Orig transcript idgnl|cribi|Naga_100050g43.6869.mrna
Orig protein idgnl|cribi|Naga_100050g43.6869
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:981197..982130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g43gene981Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1018rna1018-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29646.1cds1017Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1018 ID=rna1018|Name=rna1018|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp
GCGACTTAGGGGCCCTTCACATTTCATCTCAGACCAGAGTCGAGAGGTGA
TACGAACCAAAAGCAGAAAGGCCTAGGGTTCTCGGGGGTGTGATCTTCCT
CCATGTCATTGTGGAAGGTCTGCGTGCCCACTGCATCCGGCTCGCCAGCC
CCGCTGTTTCCTCTTCAAACAGCCTCGGGTGGTATTTTGTTTGTACTACA
TTCAACTCCTCATGACCAGAACCCTTCATGCGCCCAGGAAATTTGTCGAA
GAGGGAATTTGTGATTATCTTTTCGCGCTGATTTGGTCCCATCGGCTTCA
TCGCTTTGTTTCGTGCCGGCTCCAGGGAGTACAACCAACTTTGGCGAGAC
GGGGTCTCCCCTTGAACCCTTAAATAGGTTTTTGCCCATGAATTTATTCG
CAATCATGGGTGTCCTTGTCTACTATCCTGCCGTATCATTTGCATCTGCG
CTGCCTTTGGTGCTTAACACATGGAGCGAGGATTTTACGGGTGCGACGCG
CACAGCTTTTGACGTCATTTCCCAAGCAACCGGGAGAGGAGGTCGCCTCG
ACGCTCTGGAGCAAGGGCTCAATTTTTGCGAACTGCACCAATGTGGCGGC
TCGGTTGGGTTCGGGGGCCACTCGGATGCCTCCGGTGAGGTGACCTTAGA
CGCCATGGTTATGGACGGCGTCACGCATGACGTAGGCGGCGTGGGAGGGC
TTCGGCGGGTAAAGCGAGCCGTCTCTGTGGCCCGAGGCGTGCTCGAGCAC
ACGAACCACTCTTTGCTAGTGGGCGAGGCGGCCACGCGCTTTGCCGTCGA
CTTCCTGGGCTTCGAAGAAGAGTCTCTGAGCACGCCGGAAAGCGTCGAGG
AGCAGGCCGCATGGGTGGCGGGGGGGTGCCAGCCCAACTACTACCGGGCC
TTCGACCATTGCACGTCCTCGTGCCCGCCCTACGTGCTCCAGGCGCCAGG
CACTCGGGAAAGCGGAACAGGGCAGCAGATGGGGCGGTGGGGCCGGGTCG
GGAGGGAGGAGCATCGGCCTCGTTACTCGCCCTATGTGGAGGAGGGCAGT
CGCCAACAGCAACAGCCCAGCAACCACGACACGATCGGCATGGTGGTGGT
GGACCGAGAAGGGGAGCTGGCGTGCGGCGTTACTACCAATGGCCTCGGTC
ACAAGGTGCCCGGGCGCGTGGGCGACTCGCCCGTGCCAGGCGCCGGTTGC
TACGTGGAGCGCGGGGTGGGAGGTTGTGCCTGTACTGGGGACGGCGACGT
GATGATGCGCTTTTCCCCCTCGGCGCGGGCGGTGATGGGGATGGAGGCGG
GCATGGCGCCCCAAGAGGCGGCCGAGGCGGTGGTCGGGAGCATCGCCAGG
TACTATCCTGACTTCCGGGGGGGGATTGTCTGCGCGGACGCGGGGGGCGG
GGTGGGGGCGGCGGCGTGGAAGCTGCCGCTGTCATTCTCGACCCAGAGCC
CGGAGACGGAGGGGGTGCAAGTCTATTCGGTGACGCCGCTGGGGAGGAAG
AAGGGCCAGGCGGGGGATGTAGCGCGCGTGAGCTGA
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protein sequence of rna1018

>rna1018-protein ID=rna1018-protein|Name=rna1018|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEE
LRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTT
PPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESK
TSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWG
VDGTENTAAGGPTFKRRK
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mRNA from alignment at CM002456.1:981197..982130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1018 ID=rna1018|Name=rna1018|organism=Nannochloropsis gaditana|type=mRNA|length=934bp|location=Sequence derived from alignment at CM002456.1:981197..982130+ (Nannochloropsis gaditana)
aggactcACATTGTCTGCTCCCAGGCTCGAGAACCTCTGTCAGCTTCCAC
ACCACAGCGGAAATACAACTTTCAAACCTCAACCCTCACAGACATTCAGG
GATCAGTATGCATGGGTTTTTCGAACCAAGCTAAGGCAAGAGGTCCGTAC
AACAACATCGCATTATGCAGCCGCCACCACaggactccctccctcctgcc
cctgatGCGAGCAGTGCAAACGATGCTACCGTCACTGCCTACGTGGTCTT
TCAGTGCGCTGAATGTCGCCGCATTGTCGGAGATTCTCTAGGGCTCTCGA
GCGCGGACGAAGAGTTGAGGCATATTACCCTCCGCGGTGCCTGTGGTATA
GTCAGGGGCCCTTGTACACGAACATCAGAGGAAGGCAACGACCGGGGCTC
CACGTTTCACGAACTTTTTTGTGAAGGCTGTAGCACTCTACTGGGAAAGG
TTTATTTGACCACTCCCCCGAGGTTAGACGGGGCGCGAAATCTCTTCACC
TTGTCGACGGACGCGCTGGAGAGCTTCGAGCTGGGCACTTACGATCATGT
GTGCGAGGTCCCTCAGCCGGCAATGGCTGCTCCAATACCGTCAAGCGAGT
GTGGCGAAAGCAAGACCTCGATCGAGGCTATGCAGATGGAGCTCGTTAAA
GTCCAGAACATGATGTTGGTCTTCCACGACCGCATATCGGGCCTGGAGCG
TGCACTGAAGACAGGCACGGTGGGAGCACGGACTGGGGGCGGGACCAGAC
GAGGAGCGTGGGGAGTTGATGGGACAGAAAATACCGCAGCGGGAGGGCCT
ACGTTCAAGCGGAGAAAATAGTagagaggacgtggagaggTGAAGGGGGA
GCGGAAACCGGACAATCGGCatgacgagggggagggaggggcaagttgga
gggggaaaagggggcaaAGTACAAACTGGAAAGA
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Coding sequence (CDS) from alignment at CM002456.1:981197..982130+

>rna1018 ID=rna1018|Name=rna1018|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002456.1:981197..982130+ (Nannochloropsis gaditana)
ATGCAGCCGCCACCACaggactccctccctcctgcccctgatGCGAGCAG
TGCAAACGATGCTACCGTCACTGCCTACGTGGTCTTTCAGTGCGCTGAAT
GTCGCCGCATTGTCGGAGATTCTCTAGGGCTCTCGAGCGCGGACGAAGAG
TTGAGGCATATTACCCTCCGCGGTGCCTGTGGTATAGTCAGGGGCCCTTG
TACACGAACATCAGAGGAAGGCAACGACCGGGGCTCCACGTTTCACGAAC
TTTTTTGTGAAGGCTGTAGCACTCTACTGGGAAAGGTTTATTTGACCACT
CCCCCGAGGTTAGACGGGGCGCGAAATCTCTTCACCTTGTCGACGGACGC
GCTGGAGAGCTTCGAGCTGGGCACTTACGATCATGTGTGCGAGGTCCCTC
AGCCGGCAATGGCTGCTCCAATACCGTCAAGCGAGTGTGGCGAAAGCAAG
ACCTCGATCGAGGCTATGCAGATGGAGCTCGTTAAAGTCCAGAACATGAT
GTTGGTCTTCCACGACCGCATATCGGGCCTGGAGCGTGCACTGAAGACAG
GCACGGTGGGAGCACGGACTGGGGGCGGGACCAGACGAGGAGCGTGGGGA
GTTGATGGGACAGAAAATACCGCAGCGGGAGGGCCTACGTTCAAGCGGAG
AAAATAG
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Synonyms
Publications