EWM29646.1, cds1017 (CDS) Nannochloropsis gaditana

Overview
NameEWM29646.1
Unique Namecds1017
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:981361..982017 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29646.1
Productprotein mis18-alpha
Orig transcript idgnl|cribi|Naga_100050g43.6869.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:981361..982017 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18
Homology
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|585112218|gb|EWM29646.1| (protein mis18-alpha [Nannochloropsis gaditana])

HSP 1 Score: 449.129 bits (1154), Expect = 9.280e-160
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218
            MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK
Sbjct:    1 MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1173955446|gb|OQS02408.1| (hypothetical protein THRCLA_05213 [Thraustotheca clavata])

HSP 1 Score: 114.39 bits (285), Expect = 3.337e-28
Identity = 66/182 (36.26%), Postives = 102/182 (56.04%), Query Frame = 0
Query:   14 DASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACG--IVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGG 193
            + +  ++  VT  V+FQC  CR IVGDS+   +++ + R +TL       + + P T TS  G D+G+T+ E+ C  C ++LGK Y+ T P LD  RNLFTL TDAL S+++GT   V E         +   E  ++   IE +  ++ KVQN++LV  +R+   ER L+T   G++   G
Sbjct:    7 NGTEEDEVEVTGPVIFQCKTCRSIVGDSISFVASNSDSRTVTLAYVLHTHMSKSPLTATS--GLDKGNTYLEVLCSQCQSILGKSYIATTPALDQLRNLFTLDTDALMSYQVGTQQPVSEWNLDGANKVL---EYEKNVQMIEQLHGDMGKVQNLLLVIDERLCDTERQLETMKRGSKRAQG 183          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1173937422|gb|OQR88230.1| (hypothetical protein ACHHYP_07043 [Achlya hypogyna])

HSP 1 Score: 110.923 bits (276), Expect = 8.239e-27
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGAR 189
            VVFQC  CR I+GDS+    ++ + R +TL       +     T+  G D+G+T+HE+ C  C ++LGK Y+ T P LD  RNL TL TDAL S+++GT      V    +       E  ++   IE +  ++ KVQN++LV  +R+   ER L T   G +
Sbjct:   25 VVFQCKTCRSIIGDSMSFVQSNVDTRTVTLAFVLHTHKSKTALTANSGFDKGNTYHEILCSQCQSILGKSYIATTPALDELRNLHTLDTDALSSYQVGTQ---IGVGDWTLDGANKVLEYEKNVQMIEQLHGDMGKVQNLLLVIDERLCDTERQLDTLKRGTK 184          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1214683105|gb|OWZ01126.1| (hypothetical protein PHMEG_00027549 [Phytophthora megakarya])

HSP 1 Score: 110.153 bits (274), Expect = 6.067e-26
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELG-----TYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLE 178
            VVFQC+ CR I GDS     + E+L  ITL     +   P  +T+  G D GS+++EL C  C T+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG     T     ++ QP  A      +    +  + A++ E+ KV+ +++   +R++ LE
Sbjct:   74 VVFQCSTCRAIFGDSYAFVCSTEQLWLITLSHVTNVTLSPEVQTANRGLDAGSSYYELLCHNCQTVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGEPMQQTEGETQKMKQPVAACHDTMQKLATDRDEVAALRREMEKVKGLLVTVDERLAHLE 230          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|971508703|dbj|GAQ89502.1| (hypothetical protein KFL_005300060 [Klebsormidium nitens])

HSP 1 Score: 106.686 bits (265), Expect = 1.230e-24
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 0
Query:   26 YVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIV-RGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
             ++FQC  C  I+GDSL L + DEELR ITLRGA  IV      RT EEG   GSTF  + C+ C T +G V++TTP  LDG R+L +L    + S+ LG+ + V         AP    +   S   I  M+ EL+KV+NM+L+  +R+  LE A
Sbjct:    9 LLIFQCQHCNAILGDSLSLVATDEELRTITLRGASSIVILEEQPRTYEEGKAAGSTFLTIKCKSCRTDVGGVFITTPRNLDGIRDLLSLDAQKISSYALGSPE-VLASAPNDAPAPPAILDPFTSSAKILRMESELLKVENMILLHSERLDQLEGA 163          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|301092242|ref|XP_002996980.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112208|gb|EEY70260.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 106.686 bits (265), Expect = 1.298e-24
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
            VVFQC+ CR I GDS     + E+L  +TL     +   P  +T+  G D GS+++EL C  C  +LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG      E      + Q A+A      +    +  +  ++ E+ KV+ +M+   DR++ LE A
Sbjct:   93 VVFQCSTCRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANSGLDAGSSYYELLCHNCQAVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGDPMQKGESGEDEWMKQAAIACHETMQKLAADRNEVARLRDEMDKVKGLMVTVDDRLAHLEGA 252          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|325190137|emb|CCA24618.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 105.916 bits (263), Expect = 7.230e-24
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSS--------EC-------GESKTSIEAMQMELVKVQNMMLVFHDRISGLER 179
            +VFQC +CR I+GDS     ++++L  +TL     +V    T+TS+ G D GS+F E+FC  C TL+G+ YLTTP  LD  RN ++L T ++ S++LG        PQ A       S        +C          +  +  +  ++ KVQN++LV  DR+  +E+
Sbjct:  131 IVFQCIKCRSILGDSFSFVCSNKKLATVTLDAVTNVVVKDHTKTSQHGIDVGSSFREVFCRKCKTLIGQCYLTTPRDLDEIRNCYSLFTQSVASYQLGH-------PQRARFKKRQDSGSFMDATNDCVTEVEALSHDRAKVNKLYDDMSKVQNLLLVLDDRLHTVEK 291          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|695434707|ref|XP_009531484.1| (hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae] >gi|348674236|gb|EGZ14055.1| hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae])

HSP 1 Score: 104.76 bits (260), Expect = 1.087e-23
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGL 177
            VVFQC+ CR I GDS     + E+L  +TL     +   P  +T+  G D GS+F+EL C  C  +LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG      E      + Q A A      +    ++ +  ++ E+ KV+ +M+   DR++ L
Sbjct:   97 VVFQCSTCRSIFGDSYAFVCSTEDLWLVTLSHVTNVALSPEVQTANTGLDAGSSFYELLCHNCQAVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGDPMQQSEDAADQQMLQAAAACNDTMQKLAADRSELARLKDEMEKVKGLMVTVDDRLAHL 253          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|595443564|gb|EXX55110.1| (hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w] >gi|595443565|gb|EXX55111.1| hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 103.219 bits (256), Expect = 1.282e-23
Identity = 61/176 (34.66%), Postives = 95/176 (53.98%), Query Frame = 0
Query:    7 DSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVR-GPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERAL 181
            +S+ P P  +      +T  +VFQC +CR IVGDS    +AD +L  + L      +R G     S EG D GST+  ++C GC+  LGKV+ TTP +LD  R+L+TL+ D +  ++LG  D +     P     +PSS            Q+ + K+++M+L+ ++RI+ LE  L
Sbjct:    8 NSIKPPPQHNRVLQE-ITGPLVFQCLKCRLIVGDSFAFVTADRDLNSVVLYAKPHNIRVGTDLLWSREGIDIGSTYIMIYCNGCNLTLGKVWRTTPRKLDYIRDLYTLNLDCVMIYQLG--DFIDPNSTPTDIHTLPSS---------RMQQISINKLKDMILILNERITTLEHTL 171          
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|970631865|gb|KUF78328.1| (Kinetochore protein mis18 [Phytophthora nicotianae] >gi|970648217|gb|KUF87825.1| hypothetical protein AM588_10001614 [Phytophthora nicotianae])

HSP 1 Score: 104.375 bits (259), Expect = 1.507e-23
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 0
Query:   27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
            VVFQC+ CR I GDS     + E+L  +TL     +   P  +T+  G D GS+++EL C  C  +LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG      E      + Q A+       +    ++ +  ++ EL KV+ +M+   DR++ LE A
Sbjct:   93 VVFQCSTCRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGDPMQKGEGGEDEWMKQAAVVCHEAMQKLAVDRSEVARLRDELEKVKGLMVTVDDRLAHLEGA 252          
The following BLAST results are available for this feature:
BLAST of EWM29646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112218|gb|EWM29646.1|9.280e-160100.00protein mis18-alpha [Nannochloropsis gaditana][more]
gi|1173955446|gb|OQS02408.1|3.337e-2836.26hypothetical protein THRCLA_05213 [Thraustotheca c... [more]
gi|1173937422|gb|OQR88230.1|8.239e-2736.20hypothetical protein ACHHYP_07043 [Achlya hypogyna... [more]
gi|1214683105|gb|OWZ01126.1|6.067e-2636.31hypothetical protein PHMEG_00027549 [Phytophthora ... [more]
gi|971508703|dbj|GAQ89502.1|1.230e-2442.31hypothetical protein KFL_005300060 [Klebsormidium ... [more]
gi|301092242|ref|XP_002996980.1|1.298e-2435.63conserved hypothetical protein [Phytophthora infes... [more]
gi|325190137|emb|CCA24618.1|7.230e-2433.93conserved hypothetical protein [Albugo laibachii N... [more]
gi|695434707|ref|XP_009531484.1|1.087e-2335.67hypothetical protein PHYSODRAFT_511864 [Phytophtho... [more]
gi|595443564|gb|EXX55110.1|1.282e-2334.66hypothetical protein RirG_228310 [Rhizophagus irre... [more]
gi|970631865|gb|KUF78328.1|1.507e-2335.63Kinetochore protein mis18 [Phytophthora nicotianae... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1018rna1018Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications