EWM29646.1, cds1017 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|585112218|gb|EWM29646.1| (protein mis18-alpha [Nannochloropsis gaditana]) HSP 1 Score: 449.129 bits (1154), Expect = 9.280e-160 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query: 1 MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218
MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK
Sbjct: 1 MQPPPQDSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1173955446|gb|OQS02408.1| (hypothetical protein THRCLA_05213 [Thraustotheca clavata]) HSP 1 Score: 114.39 bits (285), Expect = 3.337e-28 Identity = 66/182 (36.26%), Postives = 102/182 (56.04%), Query Frame = 0
Query: 14 DASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACG--IVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGARTGGG 193
+ + ++ VT V+FQC CR IVGDS+ +++ + R +TL + + P T TS G D+G+T+ E+ C C ++LGK Y+ T P LD RNLFTL TDAL S+++GT V E + E ++ IE + ++ KVQN++LV +R+ ER L+T G++ G
Sbjct: 7 NGTEEDEVEVTGPVIFQCKTCRSIVGDSISFVASNSDSRTVTLAYVLHTHMSKSPLTATS--GLDKGNTYLEVLCSQCQSILGKSYIATTPALDQLRNLFTLDTDALMSYQVGTQQPVSEWNLDGANKVL---EYEKNVQMIEQLHGDMGKVQNLLLVIDERLCDTERQLETMKRGSKRAQG 183
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1173937422|gb|OQR88230.1| (hypothetical protein ACHHYP_07043 [Achlya hypogyna]) HSP 1 Score: 110.923 bits (276), Expect = 8.239e-27 Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGAR 189
VVFQC CR I+GDS+ ++ + R +TL + T+ G D+G+T+HE+ C C ++LGK Y+ T P LD RNL TL TDAL S+++GT V + E ++ IE + ++ KVQN++LV +R+ ER L T G +
Sbjct: 25 VVFQCKTCRSIIGDSMSFVQSNVDTRTVTLAFVLHTHKSKTALTANSGFDKGNTYHEILCSQCQSILGKSYIATTPALDELRNLHTLDTDALSSYQVGTQ---IGVGDWTLDGANKVLEYEKNVQMIEQLHGDMGKVQNLLLVIDERLCDTERQLDTLKRGTK 184
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|1214683105|gb|OWZ01126.1| (hypothetical protein PHMEG_00027549 [Phytophthora megakarya]) HSP 1 Score: 110.153 bits (274), Expect = 6.067e-26 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELG-----TYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLE 178
VVFQC+ CR I GDS + E+L ITL + P +T+ G D GS+++EL C C T+LG+ YLTTP LDG R+LF+ ST+A+ S+ LG T ++ QP A + + + A++ E+ KV+ +++ +R++ LE
Sbjct: 74 VVFQCSTCRAIFGDSYAFVCSTEQLWLITLSHVTNVTLSPEVQTANRGLDAGSSYYELLCHNCQTVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGEPMQQTEGETQKMKQPVAACHDTMQKLATDRDEVAALRREMEKVKGLLVTVDERLAHLE 230
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|971508703|dbj|GAQ89502.1| (hypothetical protein KFL_005300060 [Klebsormidium nitens]) HSP 1 Score: 106.686 bits (265), Expect = 1.230e-24 Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 0
Query: 26 YVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIV-RGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
++FQC C I+GDSL L + DEELR ITLRGA IV RT EEG GSTF + C+ C T +G V++TTP LDG R+L +L + S+ LG+ + V AP + S I M+ EL+KV+NM+L+ +R+ LE A
Sbjct: 9 LLIFQCQHCNAILGDSLSLVATDEELRTITLRGASSIVILEEQPRTYEEGKAAGSTFLTIKCKSCRTDVGGVFITTPRNLDGIRDLLSLDAQKISSYALGSPE-VLASAPNDAPAPPAILDPFTSSAKILRMESELLKVENMILLHSERLDQLEGA 163
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|301092242|ref|XP_002996980.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112208|gb|EEY70260.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 106.686 bits (265), Expect = 1.298e-24 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
VVFQC+ CR I GDS + E+L +TL + P +T+ G D GS+++EL C C +LG+ YLTTP LDG R+LF+ ST+A+ S+ LG E + Q A+A + + + ++ E+ KV+ +M+ DR++ LE A
Sbjct: 93 VVFQCSTCRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANSGLDAGSSYYELLCHNCQAVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGDPMQKGESGEDEWMKQAAIACHETMQKLAADRNEVARLRDEMDKVKGLMVTVDDRLAHLEGA 252
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|325190137|emb|CCA24618.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 105.916 bits (263), Expect = 7.230e-24 Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSS--------EC-------GESKTSIEAMQMELVKVQNMMLVFHDRISGLER 179
+VFQC +CR I+GDS ++++L +TL +V T+TS+ G D GS+F E+FC C TL+G+ YLTTP LD RN ++L T ++ S++LG PQ A S +C + + + ++ KVQN++LV DR+ +E+
Sbjct: 131 IVFQCIKCRSILGDSFSFVCSNKKLATVTLDAVTNVVVKDHTKTSQHGIDVGSSFREVFCRKCKTLIGQCYLTTPRDLDEIRNCYSLFTQSVASYQLGH-------PQRARFKKRQDSGSFMDATNDCVTEVEALSHDRAKVNKLYDDMSKVQNLLLVLDDRLHTVEK 291
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|695434707|ref|XP_009531484.1| (hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae] >gi|348674236|gb|EGZ14055.1| hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae]) HSP 1 Score: 104.76 bits (260), Expect = 1.087e-23 Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGL 177
VVFQC+ CR I GDS + E+L +TL + P +T+ G D GS+F+EL C C +LG+ YLTTP LDG R+LF+ ST+A+ S+ LG E + Q A A + ++ + ++ E+ KV+ +M+ DR++ L
Sbjct: 97 VVFQCSTCRSIFGDSYAFVCSTEDLWLVTLSHVTNVALSPEVQTANTGLDAGSSFYELLCHNCQAVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGDPMQQSEDAADQQMLQAAAACNDTMQKLAADRSELARLKDEMEKVKGLMVTVDDRLAHL 253
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|595443564|gb|EXX55110.1| (hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w] >gi|595443565|gb|EXX55111.1| hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 103.219 bits (256), Expect = 1.282e-23 Identity = 61/176 (34.66%), Postives = 95/176 (53.98%), Query Frame = 0
Query: 7 DSLPPAPDASSANDATVTAYVVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVR-GPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERAL 181
+S+ P P + +T +VFQC +CR IVGDS +AD +L + L +R G S EG D GST+ ++C GC+ LGKV+ TTP +LD R+L+TL+ D + ++LG D + P +PSS Q+ + K+++M+L+ ++RI+ LE L
Sbjct: 8 NSIKPPPQHNRVLQE-ITGPLVFQCLKCRLIVGDSFAFVTADRDLNSVVLYAKPHNIRVGTDLLWSREGIDIGSTYIMIYCNGCNLTLGKVWRTTPRKLDYIRDLYTLNLDCVMIYQLG--DFIDPNSTPTDIHTLPSS---------RMQQISINKLKDMILILNERITTLEHTL 171
BLAST of EWM29646.1 vs. NCBI_GenBank
Match: gi|970631865|gb|KUF78328.1| (Kinetochore protein mis18 [Phytophthora nicotianae] >gi|970648217|gb|KUF87825.1| hypothetical protein AM588_10001614 [Phytophthora nicotianae]) HSP 1 Score: 104.375 bits (259), Expect = 1.507e-23 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 0
Query: 27 VVFQCAECRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCE------VPQPAMAAPIPSSECGESKTSIEAMQMELVKVQNMMLVFHDRISGLERA 180
VVFQC+ CR I GDS + E+L +TL + P +T+ G D GS+++EL C C +LG+ YLTTP LDG R+LF+ ST+A+ S+ LG E + Q A+ + ++ + ++ EL KV+ +M+ DR++ LE A
Sbjct: 93 VVFQCSTCRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGDPMQKGEGGEDEWMKQAAVVCHEAMQKLAVDRSEVARLRDELEKVKGLMVTVDDRLAHLEGA 252 The following BLAST results are available for this feature:
BLAST of EWM29646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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