rna10170, rna10170 (mRNA) Nannochloropsis gaditana

Overview
Namerna10170
Unique Namerna10170
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length225
Alignment locationKK037264.1:38016..38704 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101262g1.7021.mrna
Orig protein idgnl|cribi|Naga_101262g1.7021
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:38016..38704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101262g1gene9873Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10170rna10170-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20534.1cds10139Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10170 ID=rna10170|Name=rna10170|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGCTCGTGGAGTGTACAGAAGCATTTGCATGCAACACCAGCAGGTTGGA
TCTAGGTGGGAAGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGAAAGGGAGGGCGGGCGGGAAGAATGCAATCCACGAAATGGAGAATCAG
GTGTCTGATTTGGGAGAGAAAGGGACAGAGGAGACGGCGGCCCAGAGGGA
AGCCTGGAAACGCTTCCTGGGCTGA
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protein sequence of rna10170

>rna10170-protein ID=rna10170-protein|Name=rna10170|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFL
NGWRRLFVAPPSPSWRACDVRVDVSENLRRIHLKLLTLCGLNIPSCLAMR
EVRDVTIVMTALQHSSVVSHCSPAAEKQPRRALLPSSPPSSLPPSLPPSL
PPSPVLRHAPRTPLLPFSA
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mRNA from alignment at KK037264.1:38016..38704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10170 ID=rna10170|Name=rna10170|organism=Nannochloropsis gaditana|type=mRNA|length=689bp|location=Sequence derived from alignment at KK037264.1:38016..38704- (Nannochloropsis gaditana)
ATGTATCGTACTATGTACGCCCCACATGGATATGGGGAGGAAGAGCAGCG
TAAGAATGCTCCCGTGTTTGGCGCTACGGGTGCTTCCCCTGCTGTCTCCT
CCTCCCCGACCCTCCACTCTGCTTCCTCCACCTCCAACATTTCCTTCCTG
AATGGCTGGCGCCGCCTCTTTGTGGCGCCTCCTTCGCCCTCTTGGCGGGC
TTGCGACGTCCGTGGTACGTAACAGAAAGGGGGAGACGGGTGTGGCCCTA
TCGCTGAGAAAATTGATCTGTAAGAGGTTTCCTCAGTCCCACCCATGAGT
TGACGTTTCGGAAAACCTGCGGCGGATACACCTGAAATTGTTGACGCTCT
GTGGCTTGAACATCCCCTCGTGCTTGGCGATGAGGGAAGTGAGGGATGTA
ACAATCGTAATGTAGGGGAAGACGCAGCTCTTGTCGCCCTCCCTCTGTCC
GTCGCCATCTCAATCACCTCCGAAACATTCAATGGATTCCACTCCATTCC
GCTAGGACGGCGCTACAACACTCCTCCGTTGTCTCCCACTGCTCGCCGGC
TGCTGAAAAACAACCTCGACGAGCCCTCCTCCCTTCCTCCCCCCCTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTGTCCTCCGA
CATGCTCCACGAACTCCACTCCTTCCTTTCTCTGCCTGA
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Coding sequence (CDS) from alignment at KK037264.1:38016..38704-

>rna10170 ID=rna10170|Name=rna10170|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at KK037264.1:38016..38704- (Nannochloropsis gaditana)
GACGGCGCTACAACACTCCTCCGTTGTCTCCCACTGCTCGCCGGCTGCTG
AAAAACAACCTCGACGAGCCCTCCTCCCTTCCTCCCCCCCTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTGTCCTCCGACATGC
TCCACGAACTCCACTCCTTCCTTTCTCTGCCTGATTGACGTTTCGGAAAA
CCTGCGGCGGATACACCTGAAATTGTTGACGCTCTGTGGCTTGAACATCC
CCTCGTGCTTGGCGATGAGGGAAGTGAGGGATGTAACAATCGTAATATGT
ATCGTACTATGTACGCCCCACATGGATATGGGGAGGAAGAGCAGCGTAAG
AATGCTCCCGTGTTTGGCGCTACGGGTGCTTCCCCTGCTGTCTCCTCCTC
CCCGACCCTCCACTCTGCTTCCTCCACCTCCAACATTTCCTTCCTGAATG
GCTGGCGCCGCCTCTTTGTGGCGCCTCCTTCGCCCTCTTGGCGGGCTTGC
GACGTCCGTGGACGGCGCTACAACACTCCTCCGTTGTCTCCCACTGCTCG
CCGGCTGCTGAAAAACAACCTCGACGAGCCCTCCTCCCTTCCTCCCCCCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTGTCC
TCCGACATGCTCCACGAACTCCACTCCTTCCTTTCTCTGCCTGATTGACG
TTTCGGAAAACCTGCGGCGGATACACCTGAAATTGTTGACGCTCTGTGGC
TTGAACATCCCCTCGTGCTTGGCGATGAGGGAAGTGAGGGATGTAACAAT
CGTAATATGTATCGTACTATGTACGCCCCACATGGATATGGGGAGGAAGA
GCAGCGTAAGAATGCTCCCGTGTTTGGCGCTACGGGTGCTTCCCCTGCTG
TCTCCTCCTCCCCGACCCTCCACTCTGCTTCCTCCACCTCCAACATTTCC
TTCCTGAATGGCTGGCGCCGCCTCTTTGTGGCGCCTCCTTCGCCCTCTTG
GCGGGCTTGCGACGTCCGTGGACGGCGCTACAACACTCCTCCGTTGTCTC
CCACTGCTCGCCGGCTGCTGAAAAACAACCTCGACGAGCCCTCCTCCCTT
CCTCCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCGCCTGTCCTCCGACATGCTCCACGAACTCCACTCCTTCCTTTCTCTGC
CTGATTGACGTTTCGGAAAACCTGCGGCGGATACACCTGAAATTGTTGAC
GCTCTGTGGCTTGAACATCCCCTCGTGCTTGGCGATGAGGGAAGTGAGGG
ATGTAACAATCGTAATATGTATCGTACTATGTACGCCCCACATGGATATG
GGGAGGAAGAGCAGCGTAAGAATGCTCCCGTGTTTGGCGCTACGGGTGCT
TCCCCTGCTGTCTCCTCCTCCCCGACCCTCCACTCTGCTTCCTCCACCTC
CAACATTTCCTTCCTGAATGGCTGGCGCCGCCTCTTTGTGGCGCCTCCTT
CGCCCTCTTGGCGGGCTTGCGACGTCCGTG
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Synonyms
Publications