EWM20534.1, cds10139 (CDS) Nannochloropsis gaditana

Overview
NameEWM20534.1
Unique Namecds10139
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:38491..38704 -
Alignment locationKK037264.1:38294..38405 -
Alignment locationKK037264.1:38016..38199 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20534.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101262g1.7021.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:38491..38704 -
KK037264.1supercontigKK037264.1:38294..38405 -
KK037264.1supercontigKK037264.1:38016..38199 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20534.1 vs. NCBI_GenBank
Match: gi|585100221|gb|EWM20534.1| (hypothetical protein Naga_101262g1 [Nannochloropsis gaditana])

HSP 1 Score: 336.65 bits (862), Expect = 8.805e-117
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVRVDVSENLRRIHLKLLTLCGLNIPSCLAMREVRDVTIVMTALQHSSVVSHCSPAAEKQPRRALLPSSPPSSLPPSLPPSLPPSPVLRHAPRTPLLPFSA 169
            MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVRVDVSENLRRIHLKLLTLCGLNIPSCLAMREVRDVTIVMTALQHSSVVSHCSPAAEKQPRRALLPSSPPSSLPPSLPPSLPPSPVLRHAPRTPLLPFSA
Sbjct:    1 MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVRVDVSENLRRIHLKLLTLCGLNIPSCLAMREVRDVTIVMTALQHSSVVSHCSPAAEKQPRRALLPSSPPSSLPPSLPPSLPPSPVLRHAPRTPLLPFSA 169
[Close]
BLAST of EWM20534.1 vs. NCBI_GenBank
Match: gi|553192802|ref|XP_005855650.1| (hypothetical protein NGA_0646500 [Nannochloropsis gaditana CCMP526] >gi|422293416|gb|EKU20716.1| hypothetical protein NGA_0646500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 150.214 bits (378), Expect = 1.654e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 
Query:    1 MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVR 71
            MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVR
Sbjct:    1 MYRTMYAPHGYGEEEQRKNAPVFGATGASPAVSSSPTLHSASSTSNISFLNGWRRLFVAPPSPSWRACDVR 71
The following BLAST results are available for this feature:
BLAST of EWM20534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100221|gb|EWM20534.1|8.805e-117100.00hypothetical protein Naga_101262g1 [Nannochloropsi... [more]
gi|553192802|ref|XP_005855650.1|1.654e-44100.00hypothetical protein NGA_0646500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10170rna10170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications