rna10165, rna10165 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10165
Unique Name	rna10165
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	786
Alignment location	KK037264.1:31850..32816 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101127g1.9866.mrna
Orig protein id	gnl\|cribi\|Naga_101127g1.9866
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037264.1	supercontig	KK037264.1:31850..32816 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101127g1	gene9868	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10165	rna10165-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20539.1	cds10134	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037264.1:31850..32816-
coding sequence from alignment at KK037264.1:31850..32816-

mRNA sequence

>rna10165 ID=rna10165|Name=rna10165|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
TCCCGACAGCACTCCGTCCGGTACTCGGAGTTGGCAAGCGAGGGAGGGCA
GGAGTGTGAGGGTGACCGAGAGGAATGCTAGGAAGGGGGGAGGGGGAGAG
GAAGGGATAAAGCGTGGATGTGAAGCGGAAGTGGGAGGTTCTTCTTGCAT
TATGAGCGTCCGTCGTCCACATTATTCGTCATGTGTGTCGAACCCTTTAT
ATATACATGTCCTCTCACCTATCAATATGCATGAAGTTAATATTGCTCCC
TTGGAAAAGGGAAAGAGGGATTTAGGATCGGGGGGGTGGGAGAAAGGAGG
GAGAGGAGCAGGAAGAGGAGGAGAGGAAGATTTGGAAAAGTGTGCAGGAC
GGGGCGTCTTCTTCCTCCCAAAAATGGCGCGAAAAGTAAGAAAAACGTGA
CACAAGCACCATGAAGCACCCAAAATTTTGAGGGAGGAAGGGAAGAAGGA
GGGGAGAGAGGAAGTCAGCTTGCGGTGCTTGCGAAGAAGGACACTGACAA
GTATCACTGGAGGTGGCTTTCCTCTGGGAGAGGGCGCACGTTCCTGGGAT
GCACGTCCAACCTCGCGGTTGAGCTTGCCTTTACTTTAATACCTAACAAA
AAGAAGGGAAGCGAGCGAAAAAAGTAAAGCTTTCGTGCATGGAAAGGGAA
AGAGTGGTGGGCGGGCGGAGGGTGGCATCCACAAAGAAGAAAGGGGAAAT
GGAGCGGTTGTTACGATCAGCGTGGACAAAGCTGTGGCACGGGCCACATA
TGATCCATATATATTTATGTATGTGTATTTTAATCC

protein sequence of rna10165

>rna10165-protein ID=rna10165-protein|Name=rna10165|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MACCRGHASISPHPLARPPALPTSSPPSLPPFPTTSLPQSMNDSPPPLPL
SPVRAESEGGLDGERDRGSPMRGASVEEKTETKVNSTCEKDLSLPHAMPF
TKAPAGAEGEEEREGPCANGMEQDGEEEGSS

mRNA from alignment at KK037264.1:31850..32816-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10165 ID=rna10165|Name=rna10165|organism=Nannochloropsis gaditana|type=mRNA|length=967bp|location=Sequence derived from alignment at KK037264.1:31850..32816- (Nannochloropsis gaditana)
AGAGTCAACGGAGAACGCTATTCCAACTTCTGTTTGTAGGAAGGATTGTG
GATGAACGCCAGCCATAAGTTGTCACCTACCAGGCCGTTCCTCACGATTG
AGGAGATATATGGCAACTCGTCTATCTTTTTATACTTCTTAATACTCACC
CGTACACAAACGTACACTCTCACATATTTGTGCACAGGTATGCTTCGAAA
ACTCGTCGAAGGGGAGAGACACTTTCCTGCAGCACGAGGGAGGGAGGGAG
GGACGGAGGAAGTGAGGGAGGTTGAAGTCGTCGGCCCCCCGTATCTCAGA
ATACGACATCAAGAGAGATGACTGTCGCTCCTTAGAACCATGACAGCAGC
ATAGGCAATGATGCGTCGCTGCGGTGGGCGTCATGGCATGCTGCCGTGGC
CACGCGAGCATTTCTCCTCATCCTCTTGCCCGCCCTCCCGCCCTCCCTAC
CTCCTCTCCTCCCTCCCTACCTCCCTTTCCCACCACGTCTCTCCCACAGA
GCATGAACGACTCCCCTCCACCACTACCGCTGTCTCCCGTGCGAGCAGAG
AGTGAGGGAGGGCTGGATGGAGAGAGGGACAGAGGGAGTCCGATGCGGGG
GGCCTCGGTGGAGGAGAAGACGGAAACCAAAGTGAACAGCACTTGGTAGG
TAGGTAGGGAGGGAGGGAGGGAGGGAGAGGTTTAGAAAGGACATGGCTGA
AACCAAAATGATGAAACGCAGAGGAGAGGCGGGCCAGGCGATGAAGGAAG
GAAGACATGATTGGAGTGCAAAGGATGTGGCACATTAAGCTCGTGACACT
TCCCTCCCTCCTTCCCGCCCTCCCTCCCTATTCCAGTGAAAAAGATTTGT
CGTTACCGCACGCCATGCCGTTTACGAAGGCGCCTGCCGGGGCGGAGGGG
GAGGAGGAGAGGGAGGGACCCTGTGCGAACGGGATGGAGCAGGACGGGGA
GGAGGAAGGGAGCAGTG

Coding sequence (CDS) from alignment at KK037264.1:31850..32816-

>rna10165 ID=rna10165|Name=rna10165|organism=Nannochloropsis gaditana|type=CDS|length=788bp|location=Sequence derived from alignment at KK037264.1:31850..32816- (Nannochloropsis gaditana)
TGAAAAAGATTTGTCGTTACCGCACGCCATGCCGTTTACGAAGGCGCCTG
CCGGGGCGGAGGGGGAGGAGGAGAGGGAGGGACCCTGTGCGAACGGGATG
GAGCAGGACGGGGAGGAGGAAGGGAGCAGTGATGGCATGCTGCCGTGGCC
ACGCGAGCATTTCTCCTCATCCTCTTGCCCGCCCTCCCGCCCTCCCTACC
TCCTCTCCTCCCTCCCTACCTCCCTTTCCCACCACGTCTCTCCCACAGAG
CATGAACGACTCCCCTCCACCACTACCGCTGTCTCCCGTGCGAGCAGAGA
GTGAGGGAGGGCTGGATGGAGAGAGGGACAGAGGGAGTCCGATGCGGGGG
GCCTCGGTGGAGGAGAAGACGGAAACCAAAGTGAACAGCACTTGTGAAAA
AGATTTGTCGTTACCGCACGCCATGCCGTTTACGAAGGCGCCTGCCGGGG
CGGAGGGGGAGGAGGAGAGGGAGGGACCCTGTGCGAACGGGATGGAGCAG
GACGGGGAGGAGGAAGGGAGCAGTGATGGCATGCTGCCGTGGCCACGCGA
GCATTTCTCCTCATCCTCTTGCCCGCCCTCCCGCCCTCCCTACCTCCTCT
CCTCCCTCCCTACCTCCCTTTCCCACCACGTCTCTCCCACAGAGCATGAA
CGACTCCCCTCCACCACTACCGCTGTCTCCCGTGCGAGCAGAGAGTGAGG
GAGGGCTGGATGGAGAGAGGGACAGAGGGAGTCCGATGCGGGGGGCCTCG
GTGGAGGAGAAGACGGAAACCAAAGTGAACAGCACTTG

Synonyms

Publications