EWM20539.1, cds10134 (CDS) Nannochloropsis gaditana

Overview
NameEWM20539.1
Unique Namecds10134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:32172..32434 -
Alignment locationKK037264.1:31850..31980 -

Link to JBrowse

Properties
Property NameValue
Start range31850
Start range.
Protein idEWM20539.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101127g1.9866.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:32172..32434 -
KK037264.1supercontigKK037264.1:31850..31980 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20539.1 vs. NCBI_GenBank
Match: gi|585100228|gb|EWM20539.1| (hypothetical protein Naga_101127g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 256.914 bits (655), Expect = 1.472e-86
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MACCRGHASISPHPLARPPALPTSSPPSLPPFPTTSLPQSMNDSPPPLPLSPVRAESEGGLDGERDRGSPMRGASVEEKTETKVNSTCEKDLSLPHAMPFTKAPAGAEGEEEREGPCANGMEQDGEEEGSS 131
            MACCRGHASISPHPLARPPALPTSSPPSLPPFPTTSLPQSMNDSPPPLPLSPVRAESEGGLDGERDRGSPMRGASVEEKTETKVNSTCEKDLSLPHAMPFTKAPAGAEGEEEREGPCANGMEQDGEEEGSS
Sbjct:    1 MACCRGHASISPHPLARPPALPTSSPPSLPPFPTTSLPQSMNDSPPPLPLSPVRAESEGGLDGERDRGSPMRGASVEEKTETKVNSTCEKDLSLPHAMPFTKAPAGAEGEEEREGPCANGMEQDGEEEGSS 131
The following BLAST results are available for this feature:
BLAST of EWM20539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100228|gb|EWM20539.1|1.472e-86100.00hypothetical protein Naga_101127g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10165rna10165Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications