rna10163, rna10163 (mRNA) Nannochloropsis gaditana

Overview
Namerna10163
Unique Namerna10163
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1153
Alignment locationKK037264.1:27106..28093 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100683g2.6889.mrna
Orig protein idgnl|cribi|Naga_100683g2.6889
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:27106..28093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100683g2gene9866Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10163rna10163-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20540.1cds10132Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10163 ID=rna10163|Name=rna10163|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp
AAGATTCAATCCTCTCATCGAAGATTCCTGGTGTCCGCGCCCCCTTGCAG
GTCAAACCCAGCATGTTCAGCACCAACGATTTGGAGATGCCCATCGCGGC
GTGTGACGAGCCTCAGGTGTCTTCCCCACGGGAGGGCGGGTTCGAATCCT
CATCTTTTCAACGCAGAAGGTGCAGCACGACGGGGAGTTTCGGCCCGCCG
GACGTGGAACGACCGCACCGAGGCATCCACCGGTTTTGGAAGGATTTCGA
CCGGCGATACATGAAACCGACCTTTGGCGGTCAAGGCGAAGGGGAGGAGG
AGGGTCCGTACTCAGAACGGGAGGGAGGGAGGGGGGAGGGGGCGGAGGAA
GAGGAGGATTTGTTGGTGTGTGCGAGGGCTTCCGAACAAGCAGGGGAGAA
GGTCCAGGACTATATCGAGCAGCGCTATAATCACCCCAAGCTACCCAAAC
CACCAGGCCTGCCGTCACAGCAGCAACCACCAACCCGGTTCCAGAGTGGG
GGGTCCGACAGCTGGTTGGATGGTAGCGGTCTAGCTAGCGAGGCGAACAA
CAGCAACAGCAATAATGGCTTCAATGCGTCTTAGTTAGGCATTAATGCTG
CGCAGTTGAAAGAACATTGGGGGAAATGGAGGGGTGGAAAGACGCTGAAG
ATAAATATTGCTTGCACAAAGCGTTATGGAAATACAGTGATATCCTCATG
AAATAATCGCAATGTCAAAATCAGAAAGTGCCTTCGAGACAAAAAAAGGA
AATTACCGGAAGACTTGCGGAGAACAAGGCTTTTTTAAGGGGGGCTCTGT
CAAATTTTCGAGTATTACATTGACATAATTAGGTTCTTTATATACATGTG
TGCATTCATGTCAAGGCCAAACCATCGACGCGGGTCACAAGTTCGATCGA
TCAATGAAAATTACAGCTTTACGCACACAGTCATATTCGTCCCTCCTTTT
TTGAAGAAACGATATCAAAGGAGTGTTGAGGGAACTGCTCTTGCTACAGC
CGGTACAGCTTTATGCATAACTCCACGGCACCCATAGAAAGGAAGCTGGA
AATCCGCAGCCGCTGCAGCTGCTGGTATAGGATCCATGATTAACACTTGT
ATTACTTGTCACACGTGCCGAATACACATTAGCTGCGTACCGGAAAAGGG
ACA
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protein sequence of rna10163

>rna10163-protein ID=rna10163-protein|Name=rna10163|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MGVHRLTSWSHEKPQCDLLYEKRDLRDFSGKRFIVDAASFMFWILQDVMP
RQDLHYLGDYGQDFVAVVRYF
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mRNA from alignment at KK037264.1:27106..28093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10163 ID=rna10163|Name=rna10163|organism=Nannochloropsis gaditana|type=mRNA|length=988bp|location=Sequence derived from alignment at KK037264.1:27106..28093+ (Nannochloropsis gaditana)
ATGGGTGTCCATCGTCTGACAAGTTGGAGCCACGAAAAGGTACGCGCGTG
CAATGACAGTGTATGAATTATCAGCCAGTTGTACCCTACACGGAAAGCTC
ATATCGTTGTAAAATGCCTCACTCACGAACTCAATCATACGCCTCCTCAC
CGTGGCTTTTACACAAATGCACCAAAACTAGCCACAATGCGACCTTCTAT
ATGAGAAAAGGGATTTGAGAGACTTCTCGGGAAAACGCTTCATAGTAGAT
GCGGCCTCTTTTATGTTTTGGATACTGCAGGACGTCATGCCCAGGCAGGT
GAGTGCATTACCACGCATCCCACTGTTTAAttgtggaaggaaaatgtTTG
AAGCAGGCTAAGTATCGCAAAGGTTGCGAAGGCTTTCAAAATTAATCCAA
GTTGAGAGGATTCCGGGCTGCCAGGCTGGCGGCTTGCTGGTAGCTCGCCC
CTCTTCACTTCTCTAATCGCGTCCGTTTCACTTTTCTCTTAATGTGTTCT
AAACAGGACCTGCACTATCTTGGGGACTACGGGCAGGATTTTGTTGCCGT
CGTTCGCTACTTTGTTCAAAATTTCTTCCTCGCGCACGAAATCGAGACTC
TCTTTGTCCATGACGGCGGCTACAATCCTGCCAAGGCCGCTACTCAACAA
AGCCGCCGGGCCAGGCGGGCCCTACTCGCAGGGGACCTCATACTCCGGGT
CTTTGCTCGTCTTCGAGAGTCCTCCGAGACGAGAAACACGGAAGACACCT
CCGAAAGCTTCCTGGacctcgcccacggcctcaCCAAAGGTCTTCGCAAG
GAGGACGTTCGGGTCGCGAAGGGGACGGGGGTGACGGCAGCCTTGTATCT
CCTGTTGGACGAACTGGATGCCACGAGTCACGCCCAGGGGGGGCCTCGCG
TGCGGCAAGTCAACACGATCATGGAGGCGGACGCGTACATTGCTCGGACG
TGCATGCGCGGTGCCTATGCGGCTGTTCTCTCTAGTGA
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Coding sequence (CDS) from alignment at KK037264.1:27106..28093+

>rna10163 ID=rna10163|Name=rna10163|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at KK037264.1:27106..28093+ (Nannochloropsis gaditana)
ATGGGTGTCCATCGTCTGACAAGTTGGAGCCACGAAAAGCCACAATGCGA
CCTTCTATATGAGAAAAGGGATTTGAGAGACTTCTCGGGAAAACGCTTCA
TAGTAGATGCGGCCTCTTTTATGTTTTGGATACTGCAGGACGTCATGCCC
AGGCAGGACCTGCACTATCTTGGGGACTACGGGCAGGATTTTGTTGCCGT
CGTTCGCTACTTTTGAATGGGTGTCCATCGTCTGACAAGTTGGAGCCACG
AAAAGCCACAATGCGACCTTCTATATGAGAAAAGGGATTTGAGAGACTTC
TCGGGAAAACGCTTCATAGTAGATGCGGCCTCTTTTATGTTTTGGATACT
GCAGGACGTCATGCCCAGGCAGGACCTGCACTATCTTGGGGACTACGGGC
AGGATTTTGTTGCCGTCGTTCGCTACTTTTGAATGGGTGTCCATCGTCTG
ACAAGTTGGAGCCACGAAAAGCCACAATGCGACCTTCTATATGAGAAAAG
GGATTTGAGAGACTTCTCGGGAAAACGCTTCATAGTAGATGCGGCCTCTT
TTATGTTTTGGATACTGCAGGACGTCATGCCCAGGCAGGACCTGCACTAT
CTTGGGGACTACGGGCAGGATTTTGTTGCCGTCGTTCGCTACTTTTGAAT
GGGTGTCCATCGTCTGACAAGTTGGAGCCACGAAAAGCCACAATGCGACC
TTCTATATGAGAAAAGGGATTTGAGAGACTTCTCGGGAAAACGCTTCATA
GTAGATGCGGCCTCTTTTATGTTTTGGATACTGCAGGACGTCATGCCCAG
GCAGGACCTGCACTATCTTGGGGACTACGGGCAGGATTTTGTTGCCGTCG
TTCGCTACTTTTGA
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Synonyms
Publications