EWM20540.1, cds10132 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20540.1
Unique Name	cds10132
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037264.1:27106..27144 +
Alignment location	KK037264.1:27287..27403 +
Alignment location	KK037264.1:27612..27668 +
Alignment location	KK037264.1:28091..28093 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20540.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100683g2.6889.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037264.1	supercontig	KK037264.1:27106..27144 +
KK037264.1	supercontig	KK037264.1:27287..27403 +
KK037264.1	supercontig	KK037264.1:27612..27668 +
KK037264.1	supercontig	KK037264.1:28091..28093 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR029060	PIN_domain-like

Homology

[Close]

BLAST of EWM20540.1 vs. NCBI_GenBank
Match: gi|585100230|gb|EWM20540.1| (hypothetical protein Naga_100683g2 [Nannochloropsis gaditana])

HSP 1 Score: 149.443 bits (376), Expect = 7.419e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query:    1 MGVHRLTSWSHEKPQCDLLYEKRDLRDFSGKRFIVDAASFMFWILQDVMPRQDLHYLGDYGQDFVAVVRYF 71
            MGVHRLTSWSHEKPQCDLLYEKRDLRDFSGKRFIVDAASFMFWILQDVMPRQDLHYLGDYGQDFVAVVRYF
Sbjct:    1 MGVHRLTSWSHEKPQCDLLYEKRDLRDFSGKRFIVDAASFMFWILQDVMPRQDLHYLGDYGQDFVAVVRYF 71

[Close]

BLAST of EWM20540.1 vs. NCBI_GenBank
Match: gi|553190517|ref|XP_005855206.1| (hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526] >gi|422293852|gb|EKU21152.1| hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.8626 bits (172), Expect = 8.818e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query:   41 MFWILQDVMPRQDLHYLGDYGQDFVAVVRYF 71
            MFWILQDVMPRQDLHYLGDYGQDFVAVVRYF
Sbjct:    1 MFWILQDVMPRQDLHYLGDYGQDFVAVVRYF 31

The following BLAST results are available for this feature:

BLAST of EWM20540.1 vs. NCBI_GenBank

BLAST of EWM20540.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585100230\|gb\|EWM20540.1\|	7.419e-46	100.00	hypothetical protein Naga_100683g2 [Nannochloropsi...	[more]
gi\|553190517\|ref\|XP_005855206.1\|	8.818e-13	100.00	hypothetical protein NGA_0073200 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10163	rna10163	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications