rna10161, rna10161 (mRNA) Nannochloropsis gaditana

Overview
Namerna10161
Unique Namerna10161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationKK037264.1:23144..24166 +

Link to JBrowse

Properties
Property NameValue
ProductCation/H exchanger, CPA1 family
Orig transcript idgnl|cribi|Naga_101390g1.2418.mrna
Orig protein idgnl|cribi|Naga_101390g1.2418
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:23144..24166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101390g1gene9864Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10161rna10161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20543.1cds10130Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10161 ID=rna10161|Name=rna10161|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGACATCGAGGGGGGGGGAAGGTTGAAAGCAAGTAACGATGACGCGCG
AGCGCATTTGGAAGGGAAATCAATGAAGGGAGGCATGAACTCATCTAAAT
TATGCGATGAGCGCTTGGTGCCAATATCAAGACAATTCGTGGCTCTTGAC
AACAGGGGGAGGTGCCGGCAATGGTCAACAATGGTCAAACGATCTTTTTT
TTAA
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protein sequence of rna10161

>rna10161-protein ID=rna10161-protein|Name=rna10161|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MWLSFSHFSSLFDVGGCVTPLLGYTPEVSETAAGEEPTAPEEGVSHEFGA
LNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSP
TKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG
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mRNA from alignment at KK037264.1:23144..24166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10161 ID=rna10161|Name=rna10161|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp|location=Sequence derived from alignment at KK037264.1:23144..24166+ (Nannochloropsis gaditana)
GACAGGTTTTGATTTTAGGAAGAATGACAGTCTCAGCCATAGCGGATATC
GTTCTCCGCCAACTTTTGGTCCGAGGTAcagccctgctcctcccttcctt
cctcccttccttccttcttcaccCTATTAGGGTTAGCCCGCGTTTTTCGC
AACCATTTCAACGGCAAAAGCCGTCATGGCCTCACTGCCTCGTTGATCAT
ACCTTCACAAACCTACTGTATGTGGCTTTCATTTtctcatttttcctccc
tttttgaTGTCGGGGGCTGCGTGACCCCGCTACTTGGTTATACACCAGAA
GTGAGCGAGACggcggccggggaggaaCCTACCGCCCCTGAAGAAGGTGT
CTCGCACGAATTCGGCGCTCTGAACACGCTTCTTTTGGTCCTGGTGCTTG
GTAAtgaggatggggaagggTAGAGGACGGAAAACGCGTAATACCCCGTG
GAAGTCCTTGCCACCTGGGCTTTTTCAGGCTATCTCCAATCTTTCATGAG
TTGAACGAAATGGCACATTCTAATTCTTGGTAACAAATTGTAGGTCTCTG
CATCCTCTCGGCATACCTGGTGAAAGCTTACAAATTCTACTATCTCCCAG
Agtaagccctccctccacccccctccacctccctccctccatccatccac
ctccctccctcccttcctatttgtctccctccccccctccctccctccct
tgcctccctccttcctcctcgccttcatccttgctttctccttttcctcc
aagctacgctctctcttccttctcaactcacctccccccctccctccttc
catcccttcccccctcccgtccttcttcccttcctcactgtctcctcctc
cccaagaTCCGCTGCTGCCATCCTGGTGGGTCTCCTCGTGGGGGGCTTGG
CCCgagccttctcccccaccaaGGATGAATTGGACTTTCTCTCCTTTCGA
CCGgagcttttcttcttcctcttcttgccgcCCATTATTTTTGAagcagg
tagggagggagggagggagggag
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Coding sequence (CDS) from alignment at KK037264.1:23144..24166+

>rna10161 ID=rna10161|Name=rna10161|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at KK037264.1:23144..24166+ (Nannochloropsis gaditana)
ATGTGGCTTTCATTTtctcatttttcctccctttttgaTGTCGGGGGCTG
CGTGACCCCGCTACTTGGTTATACACCAGAAGTGAGCGAGACggcggccg
gggaggaaCCTACCGCCCCTGAAGAAGGTGTCTCGCACGAATTCGGCGCT
CTGAACACGCTTCTTTTGGTCCTGGTGCTTGGTCTCTGCATCCTCTCGGC
ATACCTGGTGAAAGCTTACAAATTCTACTATCTCCCAGAaTCCGCTGCTG
CCATCCTGGTGGGTCTCCTCGTGGGGGGCTTGGCCCgagccttctccccc
accaaGGATGAATTGGACTTTCTCTCCTTTCGACCGgagcttttcttctt
cctcttcttgccgcCCATTATTTTTGAagcaggtagggagggagggaggg
agggagATGTGGCTTTCATTTtctcatttttcctccctttttgaTGTCGG
GGGCTGCGTGACCCCGCTACTTGGTTATACACCAGAAGTGAGCGAGACgg
cggccggggaggaaCCTACCGCCCCTGAAGAAGGTGTCTCGCACGAATTC
GGCGCTCTGAACACGCTTCTTTTGGTCCTGGTGCTTGGTCTCTGCATCCT
CTCGGCATACCTGGTGAAAGCTTACAAATTCTACTATCTCCCAGAaTCCG
CTGCTGCCATCCTGGTGGGTCTCCTCGTGGGGGGCTTGGCCCgagccttc
tcccccaccaaGGATGAATTGGACTTTCTCTCCTTTCGACCGgagctttt
cttcttcctcttcttgccgcCCATTATTTTTGAagcaggtagggagggag
ggagggagggagATGTGGCTTTCATTTtctcatttttcctccctttttga
TGTCGGGGGCTGCGTGACCCCGCTACTTGGTTATACACCAGAAGTGAGCG
AGACggcggccggggaggaaCCTACCGCCCCTGAAGAAGGTGTCTCGCAC
GAATTCGGCGCTCTGAACACGCTTCTTTTGGTCCTGGTGCTTGGTCTCTG
CATCCTCTCGGCATACCTGGTGAAAGCTTACAAATTCTACTATCTCCCAG
AaTCCGCTGCTGCCATCCTGGTGGGTCTCCTCGTGGGGGGCTTGGCCCga
gccttctcccccaccaaGGATGAATTGGACTTTCTCTCCTTTCGACCGga
gcttttcttcttcctcttcttgccgcCCATTATTTTTGAagcaggtaggg
agggagggagggagggag
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Synonyms
Publications