EWM20543.1, cds10130 (CDS) Nannochloropsis gaditana

Overview
NameEWM20543.1
Unique Namecds10130
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:23363..23543 +
Alignment locationKK037264.1:23687..23744 +
Alignment locationKK037264.1:24000..24166 +

Link to JBrowse

Properties
Property NameValue
End range.
End range24166
Protein idEWM20543.1
ProductCation/H exchanger, CPA1 family
Partialtrue
Orig transcript idgnl|cribi|Naga_101390g1.2418.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:23363..23543 +
KK037264.1supercontigKK037264.1:23687..23744 +
KK037264.1supercontigKK037264.1:24000..24166 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
GO:0006812cation transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015299solute:proton antiporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR018422Cation/H_exchanger_CPA1
IPR006153Cation/H_exchanger
Homology
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|585100236|gb|EWM20543.1| (Cation/H+ exchanger, CPA1 family, partial [Nannochloropsis gaditana])

HSP 1 Score: 264.618 bits (675), Expect = 1.887e-89
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MWLSFSHFSSLFDVGGCVTPLLGYTPEVSETAAGEEPTAPEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
            MWLSFSHFSSLFDVGGCVTPLLGYTPEVSETAAGEEPTAPEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG
Sbjct:    1 MWLSFSHFSSLFDVGGCVTPLLGYTPEVSETAAGEEPTAPEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|698776322|ref|XP_009821205.1| (sodium/hydrogen exchanger 3, variant [Aphanomyces astaci] >gi|574123330|gb|ETV88805.1| sodium/hydrogen exchanger 3, variant [Aphanomyces astaci])

HSP 1 Score: 124.02 bits (310), Expect = 7.192e-31
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0 
Query:   39 APEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGRE 134
            A    V HEFGALNTLL V +LG+CI+ AYL+K YKFYYLPES AA++VGL+VG  AR F P++ E+DFL F   LF+F  LPPIIFEAG    R+
Sbjct:   10 ASNGEVLHEFGALNTLLFVTILGMCIVCAYLIKEYKFYYLPESGAAMIVGLIVGACARVFYPSRKEMDFLRFNKLLFYFFLLPPIIFEAGYSLHRK 105
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|698776320|ref|XP_009821204.1| (sodium/hydrogen exchanger 3 [Aphanomyces astaci] >gi|574123329|gb|ETV88804.1| sodium/hydrogen exchanger 3 [Aphanomyces astaci])

HSP 1 Score: 122.865 bits (307), Expect = 3.397e-30
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0 
Query:   44 VSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGRE 134
            V HEFGALNTLL V +LG+CI+ AYL+K YKFYYLPES AA++VGL+VG  AR F P++ E+DFL F   LF+F  LPPIIFEAG    R+
Sbjct:   15 VLHEFGALNTLLFVTILGMCIVCAYLIKEYKFYYLPESGAAMIVGLIVGACARVFYPSRKEMDFLRFNKLLFYFFLLPPIIFEAGYSLHRK 105
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|673017714|ref|XP_008862818.1| (sodium/hydrogen exchanger 3 [Aphanomyces invadans] >gi|574482021|gb|ETW09013.1| sodium/hydrogen exchanger 3 [Aphanomyces invadans])

HSP 1 Score: 122.865 bits (307), Expect = 4.255e-30
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0 
Query:   39 APEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGRE 134
            A    V H+FGALNTLL V +LG+CI+ AYL+K YKFYYLPES AA++VGL+VG  AR F P++ E+DFL F+  LF+F  LPPIIFEAG    R+
Sbjct:   10 ASNVEVLHDFGALNTLLFVTILGMCIVCAYLIKEYKFYYLPESGAAMIVGLIVGACARVFFPSRKEMDFLRFKKLLFYFFLLPPIIFEAGYSLHRK 105
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|675163393|ref|XP_008890581.1| (sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica INRA-310] >gi|566033603|gb|ETI56514.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica P1569] >gi|567971288|gb|ETK96299.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica] >gi|567999635|gb|ETL49671.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica] >gi|568028809|gb|ETM02745.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica] >gi|568059415|gb|ETM55991.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica] >gi|568109918|gb|ETN24525.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica INRA-310] >gi|570337240|gb|ETO85188.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica P1976] >gi|570961333|gb|ETP26312.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica CJ01A1] >gi|570998062|gb|ETP54340.1| sodium/hydrogen exchanger 3, variant 8 [Phytophthora parasitica P10297])

HSP 1 Score: 120.168 bits (300), Expect = 1.695e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:   46 HEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGRE 134
            HEFGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA+LVG++VG  AR F P++ E++FL F   LF+FL LPPIIFEAG    R+
Sbjct:   16 HEFGALNTLLFVVILGVCIVCAYLIKEYRFYYLPESGAAMLVGMIVGVCARLFYPSRKEMEFLRFNKILFYFLLLPPIIFEAGYSVHRK 104
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|1173944980|gb|OQR93659.1| (sodium/hydrogen exchanger [Achlya hypogyna])

HSP 1 Score: 120.553 bits (301), Expect = 2.146e-29
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0 
Query:   44 VSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
            V HEFGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA++VGL+VG  AR F P++ E++FL F   LF+F  LPPIIFEAG    R+ 
Sbjct:   15 VLHEFGALNTLLFVIILGMCIVCAYLIKEYRFYYLPESGAAMIVGLIVGACARLFYPSRKEMEFLRFNKLLFYFFLLPPIIFEAGYSLHRKN 106
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|1173947594|gb|OQR95836.1| (sodium/hydrogen exchanger, partial [Thraustotheca clavata])

HSP 1 Score: 120.553 bits (301), Expect = 2.429e-29
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0 
Query:   44 VSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
            V HEFGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA++VGL+VG  AR F P++ E++FL F   LF+F  LPPIIFEAG    R+ 
Sbjct:   15 VLHEFGALNTLLFVIILGMCIVCAYLIKEYRFYYLPESGAAMIVGLIVGACARLFYPSRKEMEFLRFNKLLFYFFLLPPIIFEAGYSLHRKN 106
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|813150853|ref|XP_012201073.1| (sodium/hydrogen exchanger 3 [Saprolegnia parasitica CBS 223.65] >gi|641534298|gb|KDO28251.1| sodium/hydrogen exchanger 3 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 120.168 bits (300), Expect = 3.261e-29
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 0 
Query:   35 EEPTAPEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
            E+ T+ E  V H+FGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA++VGL+VG  AR F P++ E++FL F   LF+F  LPPIIFEAG    R+ 
Sbjct:    8 EKATSGE--VLHDFGALNTLLFVIILGMCIVCAYLIKEYRFYYLPESGAAMIVGLIVGACARLFYPSRKEMEFLRFNKLLFYFFLLPPIIFEAGYSLHRKN 106
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|669167654|ref|XP_008619389.1| (sodium/hydrogen exchanger 3 [Saprolegnia diclina VS20] >gi|530728960|gb|EQC27202.1| sodium/hydrogen exchanger 3 [Saprolegnia diclina VS20])

HSP 1 Score: 120.168 bits (300), Expect = 3.315e-29
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 0 
Query:   35 EEPTAPEEGVSHEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGREG 135
            E+ T+ E  V H+FGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA++VGL+VG  AR F P++ E++FL F   LF+F  LPPIIFEAG    R+ 
Sbjct:    8 EKATSGE--VLHDFGALNTLLFVIILGMCIVCAYLIKEYRFYYLPESGAAMIVGLIVGACARLFYPSRKEMEFLRFNKLLFYFFLLPPIIFEAGYSLHRKN 106
[Close]
BLAST of EWM20543.1 vs. NCBI_GenBank
Match: gi|675163383|ref|XP_008890576.1| (sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica INRA-310] >gi|675163391|ref|XP_008890580.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica INRA-310] >gi|566033601|gb|ETI56512.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica P1569] >gi|566033602|gb|ETI56513.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica P1569] >gi|567971286|gb|ETK96297.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica] >gi|567971287|gb|ETK96298.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica] >gi|567999633|gb|ETL49669.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica] >gi|567999634|gb|ETL49670.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica] >gi|568028807|gb|ETM02743.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica] >gi|568028808|gb|ETM02744.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica] >gi|568059413|gb|ETM55989.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica] >gi|568059414|gb|ETM55990.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica] >gi|568109916|gb|ETN24523.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica INRA-310] >gi|568109917|gb|ETN24524.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica INRA-310] >gi|570337238|gb|ETO85186.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica P1976] >gi|570337239|gb|ETO85187.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica P1976] >gi|570961331|gb|ETP26310.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica CJ01A1] >gi|570961332|gb|ETP26311.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica CJ01A1] >gi|570998060|gb|ETP54338.1| sodium/hydrogen exchanger 3, variant 6 [Phytophthora parasitica P10297] >gi|570998061|gb|ETP54339.1| sodium/hydrogen exchanger 3, variant 7 [Phytophthora parasitica P10297])

HSP 1 Score: 119.783 bits (299), Expect = 3.490e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:   46 HEFGALNTLLLVLVLGLCILSAYLVKAYKFYYLPESAAAILVGLLVGGLARAFSPTKDELDFLSFRPELFFFLFLPPIIFEAGREGGRE 134
            HEFGALNTLL V++LG+CI+ AYL+K Y+FYYLPES AA+LVG++VG  AR F P++ E++FL F   LF+FL LPPIIFEAG    R+
Sbjct:   16 HEFGALNTLLFVVILGVCIVCAYLIKEYRFYYLPESGAAMLVGMIVGVCARLFYPSRKEMEFLRFNKILFYFLLLPPIIFEAGYSVHRK 104
The following BLAST results are available for this feature:
BLAST of EWM20543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100236|gb|EWM20543.1|1.887e-89100.00Cation/H+ exchanger, CPA1 family, partial [Nannoch... [more]
gi|698776322|ref|XP_009821205.1|7.192e-3161.46sodium/hydrogen exchanger 3, variant [Aphanomyces ... [more]
gi|698776320|ref|XP_009821204.1|3.397e-3063.74sodium/hydrogen exchanger 3 [Aphanomyces astaci] >... [more]
gi|673017714|ref|XP_008862818.1|4.255e-3060.42sodium/hydrogen exchanger 3 [Aphanomyces invadans]... [more]
gi|675163393|ref|XP_008890581.1|1.695e-2962.92sodium/hydrogen exchanger 3, variant 8 [Phytophtho... [more]
gi|1173944980|gb|OQR93659.1|2.146e-2960.87sodium/hydrogen exchanger [Achlya hypogyna][more]
gi|1173947594|gb|OQR95836.1|2.429e-2960.87sodium/hydrogen exchanger, partial [Thraustotheca ... [more]
gi|813150853|ref|XP_012201073.1|3.261e-2957.43sodium/hydrogen exchanger 3 [Saprolegnia parasitic... [more]
gi|669167654|ref|XP_008619389.1|3.315e-2957.43sodium/hydrogen exchanger 3 [Saprolegnia diclina V... [more]
gi|675163383|ref|XP_008890576.1|3.490e-2962.92sodium/hydrogen exchanger 3, variant 6 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10161rna10161Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications